FC872636

Overview
NameFC872636
Unique NameFC872636
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length864
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: AQP1_BOVIN (Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 4.198e-32
Identity = 86/212 (40.57%), Postives = 121/212 (57.08%), Query Frame = 3
Query:  240 FYRAGIAEFVATFLFLYITVLTVMGVSKS-KSKCSTVGIQG---IAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWI 863
            F+RA +AEF+A  LF++I++ + +G     KS  +T  +Q    ++ AFG  I  L      ISG H+NPAVT GL L+ ++S+  A+ Y+I QC+GAI   A++ G   S  +    G N L+ G + G GLG EI+GT  LV  V + TD +R           PL IGF+V L HL  I  TG GINP+RS G+++I +  Q   D WI
Sbjct:   10 FWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDN-SLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGS----GPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITHNFQ---DHWI 213          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: AQP1_PIG (Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 5.483e-32
Identity = 88/215 (40.93%), Postives = 118/215 (54.88%), Query Frame = 3
Query:  240 FYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQG----IAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG---GANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWI 863
            F+RA +AEF+A  LF++I++ + +G         T G       ++ AFG  I  L      ISG H+NPAVT GL L+ ++S+  AV Y+I QC+GAI   A++ G   S    L G   G N L+ G   G GLG EI+GT  LV  V + TD +R          APL IGF+V L HL  I  TG GINP+RS G+A+I +  Q   D W+
Sbjct:   10 FWRAVVAEFLAMTLFIFISIGSALGFQYPVRNNQTSGAAQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAVMYIIAQCVGAIVATAILSGITSS----LPGNSLGLNSLAPGVDSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGS----APLAIGFSVALGHLLAIDYTGCGINPARSFGSAVITHNFQ---DHWV 213          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: AQP1_SHEEP (Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 7.160e-32
Identity = 87/212 (41.04%), Postives = 123/212 (58.02%), Query Frame = 3
Query:  240 FYRAGIAEFVATFLFLYITVLTVMGVSKS-KSKCSTVGIQG---IAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWI 863
            F+RA +AEF+A  LF++I++ + +G     KS  +T  +Q    ++ AFG  I  L      ISG H+NPAVT GL L+ ++S+  A+ Y+I QC+GAI    ++ G   S  +    G N L+ G + G GLG EI+GT  LV  V + TD +R  RD  +    PL IGF+V L HL  I  TG GINP+RS G+++I +  Q   D WI
Sbjct:   10 FWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAIMYIIAQCVGAIVATVILSGITSSLPDN-SLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTD-RRRRRD--LGDSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITHNFQ---DHWI 214          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: AQP1_RAT (Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4)

HSP 1 Score: 137.502 bits (345), Expect = 9.352e-32
Identity = 82/204 (40.20%), Postives = 118/204 (57.84%), Query Frame = 3
Query:  222 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGI--AWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALI 827
            E+    F+RA +AEF+A  LF++I++ + +G +    +  T+    +  + AFG  I  L      ISG H+NPAVT GL L+ ++S+  AV Y+I QC+GAI  +A++ G   S  E    G N L++G + G GLG EI+GT  LV  V + TD +R          APL IG +V L HL  I  TG GINP+RS G+A++
Sbjct:    4 EIKKKLFWRAVVAEFLAMTLFVFISIGSALGFNYPLERNQTLVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVASAILSGITSSLLEN-SLGRNDLARGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGS----APLAIGLSVALGHLLAIDYTGCGINPARSFGSAVL 202          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: AQP1_MOUSE (Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 6.062e-31
Identity = 81/204 (39.71%), Postives = 116/204 (56.86%), Query Frame = 3
Query:  222 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGI--AWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALI 827
            E+    F+RA +AEF+A  LF++I++ + +G +    +  T+    +  + AFG  I  L      ISG H+NPAVT GL L+ ++S+  AV Y+I QC+GAI   A++ G   S  +    G N L+ G + G GLG EI+GT  LV  V + TD +R          APL IG +V L HL  I  TG GINP+RS G+A++
Sbjct:    4 EIKKKLFWRAVVAEFLAMTLFVFISIGSALGFNYPLERNQTLVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVATAILSGITSSLVDN-SLGRNDLAHGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGS----APLAIGLSVALGHLLAIDYTGCGINPARSFGSAVL 202          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: AQP1_CANFA (Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 6.062e-31
Identity = 83/212 (39.15%), Postives = 117/212 (55.19%), Query Frame = 3
Query:  240 FYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQG----IAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWI 863
            F+RA +AEF+A  LF++I++ + +G +       T G       ++ AFG  I  L      ISG H+NPAVT GL L+ ++S+  AV Y+I QC+GAI   A++ G   S  +    G N L+ G + G GLG EI+GT  LV  V + TD +R           PL IG +V L HL  I  TG GINP+RS G+++I +    + D WI
Sbjct:   10 FWRAVVAEFLAMILFVFISIGSALGFNYPVRNNQTAGAAQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIVATAILSGITSSLPDN-SLGRNELAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGS----GPLAIGLSVALGHLLAIDYTGCGINPARSFGSSVITHN---FKDHWI 213          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: AQP1_HUMAN (Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3)

HSP 1 Score: 134.42 bits (337), Expect = 7.917e-31
Identity = 84/208 (40.38%), Postives = 116/208 (55.77%), Query Frame = 3
Query:  240 FYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGI--AWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG--GANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALI-YNKDQAW 848
            F+RA +AEF+AT LF++I++ + +G         T     +  + AFG  I  L      ISG H+NPAVT GL L+ ++S+  A+ Y+I QC+GAI   A++ G   S   + G   G N L+ G + G GLG EI+GT  LV  V + TD +R          APL IG +V L HL  I  TG GINP+RS G+A+I +N    W
Sbjct:   10 FWRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSS---LTGNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGS----APLAIGLSVALGHLLAIDYTGCGINPARSFGSAVITHNFSNHW 210          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: AQPA_RANES (Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.303e-30
Identity = 84/208 (40.38%), Postives = 117/208 (56.25%), Query Frame = 3
Query:  222 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVG----IQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALI 827
            E    +F+RA IAEF+A  LF++I++   +G +    +    TVG    I  ++ AFG  I  +      +SG H+NPAVT G  L+ ++S+  AV Y+I QCLGA+   A++ G   S  E    G N LS G S G GLG EI+ TF LV  V + TD +R+     V    PL IG +V L HL  I  TG G+NP+RS G+A++
Sbjct:    4 EFKKKAFWRAVIAEFLAMILFVFISIGAALGFNFPIEEKANQTVGRSQDIVKVSLAFGISIATMAQSVGHVSGAHLNPAVTLGCLLSCQISILKAVMYIIAQCLGAVVATAILSGI-TSGLENNSLGLNGLSPGVSAGQGLGVEILVTFQLVLCVVAVTDRRRHDVSGSV----PLAIGLSVALGHLIAIDYTGCGMNPARSFGSAVL 206          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: AQP1_PONAB (Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 5.131e-30
Identity = 84/209 (40.19%), Postives = 115/209 (55.02%), Query Frame = 3
Query:  240 FYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGI--AWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG---GANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALI-YNKDQAW 848
            F+RA +AEF+A  LF++I++ + +G         T     +  + AFG  I  L      ISG H+NPAVT GL L+ ++S+  A+ Y+I QC+GAI   A++ G   S    L G   G N L+ G + G GLG EI+GT  LV  V + TD +R          APL IG +V L HL  I  TG GINP+RS G+A+I +N    W
Sbjct:   10 FWRAVVAEFLAMTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSS----LPGNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGS----APLAIGLSVALGHLLAIDYTGCGINPARSFGSAVITHNFSNHW 210          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: AQP4_MOUSE (Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.651e-28
Identity = 80/210 (38.10%), Postives = 121/210 (57.62%), Query Frame = 3
Query:  237 SFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG-GANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWI 863
            +F++A  AEF+AT +F+ + V + +    S++    V +  I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+  +VFY+I QCLGAI GA ++  +  +   ++GG G   +    + G GL  E++ TF LV+T+F++ D+KR    + V     L IGF+V + HL  I  TG  +NP+RS G A+I      W + WI
Sbjct:   33 AFWKAVSAEFLATLIFVLLGVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIIAQCLGAIIGAGIL--YLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKR----TDVTGSIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WANHWI 232          
The following BLAST results are available for this feature:
BLAST of FC872636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 189
Match NameE-valueIdentityDescription
AQP1_BOVIN4.198e-3240.57Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3[more]
AQP1_PIG5.483e-3240.93Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3[more]
AQP1_SHEEP7.160e-3241.04Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3[more]
AQP1_RAT9.352e-3240.20Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4[more]
AQP1_MOUSE6.062e-3139.71Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3[more]
AQP1_CANFA6.062e-3139.15Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3[more]
AQP1_HUMAN7.917e-3140.38Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3[more]
AQPA_RANES2.303e-3040.38Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 S... [more]
AQP1_PONAB5.131e-3040.19Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3[more]
AQP4_MOUSE1.651e-2838.10Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB1CH07ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1CH07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872636 ID=FC872636; Name=FC872636; organism=Citrus clementina; type=EST; length=864bp
GGGGGAGCCCGTTGTGCCATTTATTTATTCTATTCACTCCCAAGAAACTT
GAACCTATCTTGTCTATTAATTTTCACAAGAACATAATGGAGGGCAAAGA
AGAGGATGTAAGAGTGGGAGCAAATAGGTATCGAGAGAGTCAACCTATTG
GAACCGCGGCTCAAACTCAGGATGTGAAGGATTACACGGAGCCACCTCCG
GCGCCGCTCTTCGAGCCCGGCGAATTATCGTCGTGGTCCTTTTACAGGGC
TGGCATTGCGGAGTTTGTGGCCACGTTCTTGTTTCTTTACATCACTGTTC
TAACAGTGATGGGCGTGTCCAAATCCAAAAGCAAATGTTCCACTGTGGGA
ATCCAGGGCATCGCTTGGGCTTTTGGCGGCATGATCTTCGCTCTAGTCTA
CTGCACTGCTGGCATTTCAGGGGGTCACATTAACCCAGCGGTGACATTCG
GGCTGTTCTTGGCCCGAAAGCTGTCGCTTACCACGGCAGTTTTTTACATG
ATAATGCAGTGTTTAGGGGCCATATGCGGTGCCGCCGTTGTAAAGGGCTT
TCAGAAAAGCCAATATGAAATGCTAGGCGGCGGTGCCAACATGCTCAGCA
AAGGCTACAGCAAGGGAGATGGCCTTGGAGCCGAGATTGTTGGTACCTTT
GTTCTTGTTTACACTGTCTTCTCGGCCACTGATGCCAAGCGCAATGCCCG
CGATTCTCATGTTCCTATATTGGCACCCCTGCCCATAGGATTTGCTGTGT
TTTTGGTGCACTTGGCAACAATTCCTATCACAGGAACAGGCATTAACCCA
TCTAGGAGTCTTGGCGCAGCTCTGATATACAACAAGGACCAAGCCTGGGA
TGATCCTTGGATTT
back to top