FC872636

Overview
NameFC872636
Unique NameFC872636
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length864
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: AQP2_RAT (Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.143e-22
Identity = 76/215 (35.35%), Postives = 110/215 (51.16%), Query Frame = 3
Query:  222 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG-GANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWI 863
            EL S +F RA +AEF+AT LF++  + + +  + S        +  IA AFG  I  LV     +SG HINPAVT    +   +S   A FY+  Q LGA+ GAA++   + +  E+ G    N L    + G  +  E+  T  LV  +F++TD +R            L IGF+V L HL  I  TG  +NP+RSL  A++  K   +DD W+
Sbjct:    3 ELRSIAFSRAVLAEFLATLLFVFFGLGSALQWASSPPS-----VLQIAVAFGLGIGILVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAIL--HEITPVEIRGDLAVNALHNNATAGQAVTVELFLTMQLVLCIFASTDERRGDNLGS----PALSIGFSVTLGHLLGIYFTGCSMNPARSLAPAVVTGK---FDDHWV 203          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: AQP2_BOVIN (Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 5.143e-22
Identity = 75/215 (34.88%), Postives = 111/215 (51.63%), Query Frame = 3
Query:  222 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGG-GANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWI 863
            EL S +F RA +AEF+AT LF++  + + +   ++        +  IA AFG  I  LV     +SG HINPAVT    +   +S   AVFY+  Q LGA+ GAA++   + +   + G    N L+   + G  +  E+  T  LV  +F++TD +R            L IGF+V L HL  I  TG  +NP+RSL  A++  K   +DD W+
Sbjct:    3 ELRSIAFSRAVLAEFLATLLFVFFGLGSALNWPQALPS-----VLQIAMAFGLAIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAVFYVAAQLLGAVAGAALL--HEITPPAIRGDLAVNALNNNSTAGQAVTVELFLTLQLVLCIFASTDERRGDNVG----TPALSIGFSVALGHLLGIHYTGCSMNPARSLAPAIVTGK---FDDHWV 203          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: MIP_SHEEP (Lens fiber major intrinsic protein OS=Ovis aries GN=MIP PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.773e-22
Identity = 73/203 (35.96%), Postives = 106/203 (52.22%), Query Frame = 3
Query:  222 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGA-NMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALI 827
            EL S SF+RA  AEF AT  +++      +G S   +    + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL  A+ Y++ Q LGA+ GAAV+  +  +   + G  A N L  G S G     EI  T   V  +F+  D +RN R   V     L +GF++ L HL  +  TG G+NP+RS   A++
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWAP-GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVL--YSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL 194          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUAB (Aquaporin Z OS=Brucella abortus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.773e-22
Identity = 62/177 (35.03%), Postives = 89/177 (50.28%), Query Frame = 3
Query:  345 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGG------ANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNK---DQAW 848
            +G  G+A AFG  +  + Y   GISGGH NPAV+ GL +A +L     + Y + Q LGAI  AA++      +     GG        +   GYS   GL  EI+ T   +  +  +T +   A        AP+ IGF + L+HL +IP+T T +NP+RS G AL  ++    Q W
Sbjct:   34 IGFLGVALAFGLTVLTMAYAVGGISGGHFNPAVSLGLTVAGRLPAKDLIPYWVAQVLGAIAAAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGSTSSLAPAG------FAPIAIGFGLTLIHLVSIPVTNTSVNPARSTGVALFADRAALSQLW 204          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUA2 (Aquaporin Z OS=Brucella abortus (strain 2308) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.773e-22
Identity = 62/177 (35.03%), Postives = 89/177 (50.28%), Query Frame = 3
Query:  345 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGG------ANMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNK---DQAW 848
            +G  G+A AFG  +  + Y   GISGGH NPAV+ GL +A +L     + Y + Q LGAI  AA++      +     GG        +   GYS   GL  EI+ T   +  +  +T +   A        AP+ IGF + L+HL +IP+T T +NP+RS G AL  ++    Q W
Sbjct:   34 IGFLGVALAFGLTVLTMAYAVGGISGGHFNPAVSLGLTVAGRLPAKDLIPYWVAQVLGAIAAAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGSTSSLAPAG------FAPIAIGFGLTLIHLVSIPVTNTSVNPARSTGVALFADRAALSQLW 204          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: AQPZ2_RHIME (Aquaporin Z 2 OS=Rhizobium meliloti GN=aqpZ2 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.773e-22
Identity = 62/166 (37.35%), Postives = 92/166 (55.42%), Query Frame = 3
Query:  345 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAV--VKGFQKSQYEMLGGGANMLSK----GYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAAL 824
            +G+ G+++AFG  +  + Y   GISGGH NPAV+ GL +A ++   + V Y+I Q  GAI  AAV  V    K+ +++    AN   +    GYS    L  E+V TF  +  +  +T  +  A        AP+ IG A+ L+HL +IP+T T +NP+RS G AL
Sbjct:   34 IGLLGVSFAFGLTVLTMAYTVGGISGGHFNPAVSLGLAVAGRVPAASLVSYVIAQVAGAIIAAAVLYVIATGKADFQLGSFAANGYGEHSPGGYSLTAALVTEVVMTFFFLIIILGSTHRRVPAG------FAPIAIGLALTLIHLVSIPVTNTSVNPARSTGQAL 193          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: AQPZ1_RHIME (Aquaporin Z 1 OS=Rhizobium meliloti GN=aqpZ1 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.773e-22
Identity = 65/180 (36.11%), Postives = 97/180 (53.89%), Query Frame = 3
Query:  345 VGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAV--VKGFQKSQYEMLGGGANMLSK----GYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWI 863
            +G+ G+++AFG  +  + Y   GISGGH NPAV+ GL +A ++   + V Y++ Q  GAI  AAV  V    K+ +++ G  AN   +    GYS    L  E+V T   +  +  +T        S VP+  AP+ IG  + L+HL +IP+T T +NP+RS G AL    D A    W+
Sbjct:   34 IGLLGVSFAFGLTVLTMAYAVGGISGGHFNPAVSVGLAVAGRMPPASLVGYILAQVTGAIAAAAVLYVIASGKADFQLGGFAANGYGEHSPGGYSLTAALVTEVVMTAFFLLIILGST-------HSRVPVGFAPIAIGLGLTLIHLVSIPVTNTSVNPARSTGQALFVG-DWAISQLWL 205          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: MIP_BOVIN (Lens fiber major intrinsic protein OS=Bos taurus GN=MIP PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.146e-21
Identity = 73/203 (35.96%), Postives = 106/203 (52.22%), Query Frame = 3
Query:  222 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGA-NMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALI 827
            EL S SF+RA  AEF A+  +++      +G S   +    + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL  A+ YM+ Q LGA+ GAAV+  +  +   + G  A N L  G S G     EI  T   V  +F+  D +RN R   V     L +GF++ L HL  +  TG G+NP+RS   A++
Sbjct:    3 ELRSASFWRAICAEFFASLFYVFFG----LGASLRWAP-GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVL--YSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL 194          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: MIP_CANFA (Lens fiber major intrinsic protein OS=Canis familiaris GN=MIP PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.496e-21
Identity = 74/203 (36.45%), Postives = 104/203 (51.23%), Query Frame = 3
Query:  222 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGA-NMLSKGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALI 827
            EL S SF+RA  AEF AT  +++      +G S   +    + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL  A  YM  Q LGA+ GAAV+  +  +   + G  A N L  G S G     EI  T   V  +F+  D +RN R   V     L +GF++ L HL  +  TG G+NP+RS   A++
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWTP-GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVL--YSVTPPAVRGNLALNTLHPGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAIL 194          
BLAST of FC872636 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.954e-21
Identity = 73/219 (33.33%), Postives = 114/219 (52.05%), Query Frame = 3
Query:  216 PGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTTAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKGDGLGAEIVGTFVLVYTVFS-ATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPSRSLGAALIYNKDQAWDDPWI 863
            P E +     +AG+AEF++TF+F++    + +  +K  +    +  G+   + A    +F  V   A ISGGH+NPAV FG F+   ++L   + Y+I Q LG+I  +A++     S     G     LS+G   G  L  EIV TF LVYTV++ A D K+     ++ I+AP+ IGF V    L     TG  +NP+ S G A++     +W + W+
Sbjct:   11 PQEATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAV-FGAFVGGNITLLRGIVYIIAQLLGSIVCSALLVFVTASSVPAFG-----LSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKKG----NIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPAVV---SWSWSNHWV 216          
The following BLAST results are available for this feature:
BLAST of FC872636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 189
Match NameE-valueIdentityDescription
AQP2_RAT5.143e-2235.35Aquaporin-2 OS=Rattus norvegicus GN=Aqp2 PE=1 SV=1[more]
AQP2_BOVIN5.143e-2234.88Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2[more]
MIP_SHEEP8.773e-2235.96Lens fiber major intrinsic protein OS=Ovis aries G... [more]
AQPZ_BRUAB8.773e-2235.03Aquaporin Z OS=Brucella abortus GN=aqpZ PE=3 SV=1[more]
AQPZ_BRUA28.773e-2235.03Aquaporin Z OS=Brucella abortus (strain 2308) GN=a... [more]
AQPZ2_RHIME8.773e-2237.35Aquaporin Z 2 OS=Rhizobium meliloti GN=aqpZ2 PE=3 ... [more]
AQPZ1_RHIME8.773e-2236.11Aquaporin Z 1 OS=Rhizobium meliloti GN=aqpZ1 PE=3 ... [more]
MIP_BOVIN1.146e-2135.96Lens fiber major intrinsic protein OS=Bos taurus G... [more]
MIP_CANFA1.496e-2136.45Lens fiber major intrinsic protein OS=Canis famili... [more]
TIP1_MEDSA1.954e-2133.33Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CH07ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1CH07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872636 ID=FC872636; Name=FC872636; organism=Citrus clementina; type=EST; length=864bp
GGGGGAGCCCGTTGTGCCATTTATTTATTCTATTCACTCCCAAGAAACTT
GAACCTATCTTGTCTATTAATTTTCACAAGAACATAATGGAGGGCAAAGA
AGAGGATGTAAGAGTGGGAGCAAATAGGTATCGAGAGAGTCAACCTATTG
GAACCGCGGCTCAAACTCAGGATGTGAAGGATTACACGGAGCCACCTCCG
GCGCCGCTCTTCGAGCCCGGCGAATTATCGTCGTGGTCCTTTTACAGGGC
TGGCATTGCGGAGTTTGTGGCCACGTTCTTGTTTCTTTACATCACTGTTC
TAACAGTGATGGGCGTGTCCAAATCCAAAAGCAAATGTTCCACTGTGGGA
ATCCAGGGCATCGCTTGGGCTTTTGGCGGCATGATCTTCGCTCTAGTCTA
CTGCACTGCTGGCATTTCAGGGGGTCACATTAACCCAGCGGTGACATTCG
GGCTGTTCTTGGCCCGAAAGCTGTCGCTTACCACGGCAGTTTTTTACATG
ATAATGCAGTGTTTAGGGGCCATATGCGGTGCCGCCGTTGTAAAGGGCTT
TCAGAAAAGCCAATATGAAATGCTAGGCGGCGGTGCCAACATGCTCAGCA
AAGGCTACAGCAAGGGAGATGGCCTTGGAGCCGAGATTGTTGGTACCTTT
GTTCTTGTTTACACTGTCTTCTCGGCCACTGATGCCAAGCGCAATGCCCG
CGATTCTCATGTTCCTATATTGGCACCCCTGCCCATAGGATTTGCTGTGT
TTTTGGTGCACTTGGCAACAATTCCTATCACAGGAACAGGCATTAACCCA
TCTAGGAGTCTTGGCGCAGCTCTGATATACAACAAGGACCAAGCCTGGGA
TGATCCTTGGATTT
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