FC872638

Overview
NameFC872638
Unique NameFC872638
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length601
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FBRL_CAEEL (rRNA 2'-O-methyltransferase fibrillarin OS=Caenorhabditis elegans GN=fib-1 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 9.656e-44
Identity = 88/117 (75.21%), Postives = 98/117 (83.76%), Query Frame = 2
Query:   11 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKKQK 361
            AKKR NV+PI+EDARHP KYRMLVGMVDVIFSDVAQPDQARI+ALNA  FL+ GGH VISIKANCIDST   EAVF  EV KL++++FKP EQVTLEP+ERDHA VV  YR  K +K
Sbjct:  235 AKKRPNVVPIVEDARHPHKYRMLVGMVDVIFSDVAQPDQARIVALNAQNFLRNGGHAVISIKANCIDSTAEPEAVFAGEVNKLKEEKFKPLEQVTLEPYERDHAVVVAVYRPVKGKK 351          
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FBRL3_ARATH (Putative rRNA 2'-O-methyltransferase fibrillarin 3 OS=Arabidopsis thaliana GN=FIB3 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.106e-42
Identity = 82/115 (71.30%), Postives = 98/115 (85.22%), Query Frame = 2
Query:   11 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKK 355
            A+KRTNVIPIIEDARHPAKYRMLVGMVD+IFSDV  P+QA IL+LNASYFLK+GGHF+ISIKAN IDST+ AE V+Q EV+KLQ ++ +P E + L+  E  HACV GGYR+P+K
Sbjct:  178 AEKRTNVIPIIEDARHPAKYRMLVGMVDIIFSDVNHPEQANILSLNASYFLKSGGHFMISIKANSIDSTIAAETVYQMEVEKLQMEELRPTEILHLDSCEEKHACVFGGYRLPRK 292          
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FBRL_CANGA (rRNA 2'-O-methyltransferase fibrillarin OS=Candida glabrata GN=NOP1 PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 6.477e-40
Identity = 80/110 (72.73%), Postives = 92/110 (83.64%), Query Frame = 2
Query:   11 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGY 340
            AKKR NVIPIIEDARHP KYRMLVGMVD +F+DVAQPDQARI+ALN+  FLK  G  VISIKANCIDSTV AE VF  EV+KL++++ KP EQ+TLEP+ERDH  V+G Y
Sbjct:  207 AKKRPNVIPIIEDARHPQKYRMLVGMVDAVFADVAQPDQARIIALNSHMFLKDQGGVVISIKANCIDSTVDAETVFAREVQKLREEKIKPLEQLTLEPYERDHCIVIGRY 316          
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FBRL_ASHGO (rRNA 2'-O-methyltransferase fibrillarin OS=Ashbya gossypii GN=NOP1 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 8.459e-40
Identity = 79/110 (71.82%), Postives = 92/110 (83.64%), Query Frame = 2
Query:   11 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGY 340
            AKKR NVIPIIEDARHP KYRML+GMVD +F+DVAQPDQARI+ALN+  FLK  G  VISIKANCIDSTV AE VF  EV+KL++++ KP EQ+TLEP+ERDH  V+G Y
Sbjct:  212 AKKRPNVIPIIEDARHPQKYRMLIGMVDAVFADVAQPDQARIIALNSHMFLKDQGGVVISIKANCIDSTVDAETVFAREVQKLREEKIKPLEQLTLEPYERDHCIVIGRY 321          
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FBRL_YEAST (rRNA 2'-O-methyltransferase fibrillarin OS=Saccharomyces cerevisiae GN=NOP1 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.105e-39
Identity = 79/110 (71.82%), Postives = 92/110 (83.64%), Query Frame = 2
Query:   11 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGY 340
            AKKR N+IPIIEDARHP KYRML+GMVD +F+DVAQPDQARI+ALN+  FLK  G  VISIKANCIDSTV AE VF  EV+KL++++ KP EQ+TLEP+ERDH  VVG Y
Sbjct:  211 AKKRPNIIPIIEDARHPQKYRMLIGMVDCVFADVAQPDQARIIALNSHMFLKDQGGVVISIKANCIDSTVDAETVFAREVQKLREERIKPLEQLTLEPYERDHCIVVGRY 320          
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FBRL_LEIMA (rRNA 2'-O-methyltransferase fibrillarin OS=Leishmania major PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.105e-39
Identity = 81/115 (70.43%), Postives = 93/115 (80.87%), Query Frame = 2
Query:   17 KRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKKQK 361
            KR  ++PI+EDAR+P KYRMLV MVD IF DVAQPDQARILALNA  FL+ GGH+VISIKANCIDST+ A  V  SE+ KL++D+ KP EQV+LEPFERDHA VVG YR  KK K
Sbjct:  182 KRRPIVPIVEDARYPMKYRMLVPMVDCIFMDVAQPDQARILALNAQAFLQNGGHYVISIKANCIDSTLEAPVVIASELNKLKKDKLKPLEQVSLEPFERDHAVVVGVYRPVKKSK 296          
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FBRL_DEBHA (rRNA 2'-O-methyltransferase fibrillarin OS=Debaryomyces hansenii GN=NOP1 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.443e-39
Identity = 79/110 (71.82%), Postives = 92/110 (83.64%), Query Frame = 2
Query:   11 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGY 340
            AKKR NVIPII+DARHP KYRML+GMVD +F+DVAQPDQARI+ALN+  FLK  G  VISIKANCIDSTV AE VF  EV+KL++++ KP EQ+TLEP+ERDH  VVG Y
Sbjct:  213 AKKRPNVIPIIDDARHPQKYRMLIGMVDAVFADVAQPDQARIIALNSHLFLKDQGTVVISIKANCIDSTVDAETVFAREVQKLREERIKPLEQLTLEPYERDHCIVVGRY 322          
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FBRL_SCHPO (rRNA 2'-O-methyltransferase fibrillarin OS=Schizosaccharomyces pombe GN=fib1 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 9.352e-39
Identity = 78/110 (70.91%), Postives = 92/110 (83.64%), Query Frame = 2
Query:   11 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGY 340
            AKKRTNVIPI+EDARH  KYRMLVGMVDV+F+DVAQPDQARI+ALNA+ FLK  G  VIS+KA+CIDST  A  VF  EVKK+Q+++ KP EQ+TLEP+ERDH  +VG Y
Sbjct:  192 AKKRTNVIPIVEDARHVQKYRMLVGMVDVVFADVAQPDQARIVALNAAAFLKNEGGVVISVKASCIDSTADAAVVFAREVKKMQEEKIKPQEQLTLEPYERDHCIIVGKY 301          
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FBRL_TETTH (rRNA 2'-O-methyltransferase fibrillarin OS=Tetrahymena thermophila GN=FIB PE=2 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 6.062e-38
Identity = 75/111 (67.57%), Postives = 91/111 (81.98%), Query Frame = 2
Query:   11 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYR 343
            AKKRTNV+PII DAR P +YR LVGMVDV+F+DVAQPDQARI+ +N  YFLK GGHF+ISIKA CIDST     VF +EV+KL+++  KP +Q+TLEP+ERDHA V+G YR
Sbjct:  183 AKKRTNVVPIIGDARKPQEYRFLVGMVDVVFADVAQPDQARIMGMNCQYFLKNGGHFLISIKACCIDSTNEPAVVFAAEVQKLKEEGLKPEQQLTLEPYERDHAMVLGSYR 293          
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FBRL_DICDI (rRNA 2'-O-methyltransferase fibrillarin OS=Dictyostelium discoideum GN=fbl PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.304e-37
Identity = 73/112 (65.18%), Postives = 96/112 (85.71%), Query Frame = 2
Query:   11 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQV-TLEPFERDHACVVGGYR 343
            AKKRTNVIPIIEDARHP KYRML+GMVDV+F+DVAQP+QA+I+A N++YFLK  GHF+ISIKA+CIDST P E V Q+E+ KL++++ +P   + TL+P+ER+H+ V+G YR
Sbjct:  216 AKKRTNVIPIIEDARHPQKYRMLIGMVDVVFADVAQPNQAQIVAQNSAYFLKNEGHFIISIKASCIDSTAPTEVVVQNEITKLKKEKLRPQHLLKTLDPYERNHSLVIGVYR 327          
The following BLAST results are available for this feature:
BLAST of FC872638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
FBRL_CAEEL9.656e-4475.21rRNA 2'-O-methyltransferase fibrillarin OS=Caenorh... [more]
FBRL3_ARATH3.106e-4271.30Putative rRNA 2'-O-methyltransferase fibrillarin 3... [more]
FBRL_CANGA6.477e-4072.73rRNA 2'-O-methyltransferase fibrillarin OS=Candida... [more]
FBRL_ASHGO8.459e-4071.82rRNA 2'-O-methyltransferase fibrillarin OS=Ashbya ... [more]
FBRL_YEAST1.105e-3971.82rRNA 2'-O-methyltransferase fibrillarin OS=Sacchar... [more]
FBRL_LEIMA1.105e-3970.43rRNA 2'-O-methyltransferase fibrillarin OS=Leishma... [more]
FBRL_DEBHA1.443e-3971.82rRNA 2'-O-methyltransferase fibrillarin OS=Debaryo... [more]
FBRL_SCHPO9.352e-3970.91rRNA 2'-O-methyltransferase fibrillarin OS=Schizos... [more]
FBRL_TETTH6.062e-3867.57rRNA 2'-O-methyltransferase fibrillarin OS=Tetrahy... [more]
FBRL_DICDI2.304e-3765.18rRNA 2'-O-methyltransferase fibrillarin OS=Dictyos... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB1CH09ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1CH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872638 ID=FC872638; Name=FC872638; organism=Citrus clementina; type=EST; length=601bp
CGGGCCGGGGGCAAAGAAGAGAACTAATGTTATACCCATAATTGAAGATG
CTAGACATCCTGCCAAGTACCGTATGTTGGTCGGTATGGTAGATGTAATA
TTTTCTGACGTTGCCCAACCGGATCAGGCGAGGATTTTAGCCCTGAATGC
ATCATATTTTCTCAAAGCTGGAGGTCATTTTGTTATTTCTATCAAGGCAA
ACTGCATAGATTCCACTGTTCCTGCTGAGGCAGTGTTCCAGAGTGAAGTT
AAGAAGCTGCAACAGGATCAGTTCAAACCCTTTGAGCAAGTGACACTCGA
GCCCTTTGAGCGAGATCACGCCTGTGTTGTTGGTGGCTACCGTATGCCAA
AGAAACAGAAGGCTTAGACCATCATCGGACATCCACCATTTTGTTGTATC
CAAACATTAATGCTGGAGTCGTTGATTTTGTAGTAGCTAGCTGGGATGAA
CAATTTTGTGCTATCTGACCTTGTTATGTTTTATTGAGATTCTTTGCGTG
GAACCTCATTGTGAAAATGCTTGTTAAAACCCTTTGATCATGTAGCGAAA
TCTCAATCGTTCGTCCTGTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A
back to top