FC872638

Overview
NameFC872638
Unique NameFC872638
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length601
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FBRL_NEUCR (rRNA 2'-O-methyltransferase fibrillarin OS=Neurospora crassa GN=nop-1 PE=3 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 5.674e-36
Identity = 74/106 (69.81%), Postives = 88/106 (83.02%), Query Frame = 2
Query:   11 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACV 328
            A +RTNVIPI+EDAR P  YRML+ MVDVIF+DVAQPDQARI+ +NA  FLK GG  +ISIKA+CIDST P E VF SEV+KL++D+F P EQ+TLEP+ERDHA V
Sbjct:  206 ATRRTNVIPIVEDARKPMAYRMLLPMVDVIFADVAQPDQARIVGINAKLFLKQGGGLLISIKASCIDSTAPPEQVFASEVQKLREDKFFPKEQLTLEPYERDHAMV 311          
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FBRL_ENCCU (rRNA 2'-O-methyltransferase fibrillarin OS=Encephalitozoon cuniculi GN=NOP1 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.410e-36
Identity = 69/115 (60.00%), Postives = 92/115 (80.00%), Query Frame = 2
Query:   17 KRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPKKQK 361
            KR N++PIIEDAR+P++YRMLV +VD IFSDV+QPDQ RI+ALNA YFLK GG   +SIKANC++S VPAE VF  EV  L+++  +P EQVTLEPFE+DHA ++G +++   ++
Sbjct:  168 KRPNIVPIIEDARYPSRYRMLVPIVDCIFSDVSQPDQTRIVALNAQYFLKEGGGVDVSIKANCVNSAVPAETVFADEVNILRKNSIRPKEQVTLEPFEKDHAMIIGRFKLSASEE 282          
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FBRL_GIALA (rRNA 2'-O-methyltransferase fibrillarin OS=Giardia lamblia PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.599e-30
Identity = 68/112 (60.71%), Postives = 84/112 (75.00%), Query Frame = 2
Query:   11 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRM 346
            AK RTNV PII DARHP KYRM+V  VD IFSDVAQPDQARI+A NA Y+LKA G  +ISIKA+ +DST+  EAVF  E++ L++  FK  EQ+ +  F R+HA VVG +R+
Sbjct:  213 AKARTNVYPIIADARHPYKYRMIVPEVDCIFSDVAQPDQARIVAENARYYLKANGGMLISIKASSVDSTLKPEAVFAREIETLREHDFKCKEQLDIGEFHRNHAIVVGRFRV 324          
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FLPA_METKA (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanopyrus kandleri GN=flpA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.508e-23
Identity = 53/112 (47.32%), Postives = 73/112 (65.18%), Query Frame = 2
Query:    5 PGAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGY 340
            P  +KR N+IPI+ DA  P  Y  LV  VDVI+ D+AQP QA ++A NA  FL+ GG+ +++IKA  ID T   E VF+ E +KL++  F+  E + LEP+ERDH  +V  Y
Sbjct:  119 PVCEKRPNMIPILGDATKPHGYAPLVEQVDVIYQDIAQPKQAEVVADNAEAFLRPGGYVIVAIKARSIDVTKEPEEVFEDEERKLEERGFEVLEVIDLEPYERDHVGIVAEY 230          
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FLPA_THESM (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=flpA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.603e-22
Identity = 55/109 (50.46%), Postives = 77/109 (70.64%), Query Frame = 2
Query:    5 PGAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVV 331
            P  ++R N++PI+ DA  P +YR LV  VDVIF DVAQP QA+IL  NA  +LK+GG+ +ISIK+  ID T   E VF+ EV+K   + F+  E+++LEP+E+DHA +V
Sbjct:  115 PLVEERRNIVPILGDATKPEEYRALVTKVDVIFEDVAQPTQAKILIDNAKAYLKSGGYGMISIKSRSIDVTKEPEEVFR-EVEKELSEYFEVVERISLEPYEKDHALIV 222          
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FLPA_PYRAE (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Pyrobaculum aerophilum GN=flpA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.039e-21
Identity = 54/108 (50.00%), Postives = 69/108 (63.89%), Query Frame = 2
Query:   20 RTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYR 343
            R NV+PI+ DAR P +Y   V  VDV++ DVAQP QA+ILA NA YFLK GGH ++ IKA  ID T PA   F+ E+  L++  F   E V LEP++  HA V+   R
Sbjct:  128 RRNVVPILGDARFPYQYAHYVKGVDVVYIDVAQPAQAKILADNADYFLKPGGHVMLVIKAMSIDVTAPATETFKQEINTLKERGFDILETVHLEPYDTAHAMVIAKKR 235          
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FLPA_SULIY (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=flpA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.772e-21
Identity = 44/111 (39.64%), Postives = 74/111 (66.67%), Query Frame = 2
Query:   11 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYR 343
            A++R N+ P++ DAR P  Y+ +V  VDV++ D+AQPDQ  I   NA +FLK  G+ ++ IKA  ID T   + ++++EV+KL+   F+  + + L+P+++DHA V+  Y+
Sbjct:  121 AQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNARFFLKVNGYMLLVIKARSIDVTKDPKEIYKAEVEKLENSNFETIQIINLDPYDKDHAIVLSRYK 231          
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FLPA_SULIN (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=flpA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.772e-21
Identity = 44/111 (39.64%), Postives = 74/111 (66.67%), Query Frame = 2
Query:   11 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYR 343
            A++R N+ P++ DAR P  Y+ +V  VDV++ D+AQPDQ  I   NA +FLK  G+ ++ IKA  ID T   + ++++EV+KL+   F+  + + L+P+++DHA V+  Y+
Sbjct:  121 AQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNARFFLKVNGYMLLVIKARSIDVTKDPKEIYKAEVEKLENSNFETIQIINLDPYDKDHAIVLSRYK 231          
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FLPA_SULIM (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=flpA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.772e-21
Identity = 44/111 (39.64%), Postives = 74/111 (66.67%), Query Frame = 2
Query:   11 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYR 343
            A++R N+ P++ DAR P  Y+ +V  VDV++ D+AQPDQ  I   NA +FLK  G+ ++ IKA  ID T   + ++++EV+KL+   F+  + + L+P+++DHA V+  Y+
Sbjct:  121 AQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNARFFLKVNGYMLLVIKARSIDVTKDPKEIYKAEVEKLENSNFETIQIINLDPYDKDHAIVLSRYK 231          
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FLPA_SULIL (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=flpA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.772e-21
Identity = 44/111 (39.64%), Postives = 74/111 (66.67%), Query Frame = 2
Query:   11 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYR 343
            A++R N+ P++ DAR P  Y+ +V  VDV++ D+AQPDQ  I   NA +FLK  G+ ++ IKA  ID T   + ++++EV+KL+   F+  + + L+P+++DHA V+  Y+
Sbjct:  121 AQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNARFFLKVNGYMLLVIKARSIDVTKDPKEIYKAEVEKLENSNFETIQIINLDPYDKDHAIVLSRYK 231          
The following BLAST results are available for this feature:
BLAST of FC872638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
FBRL_NEUCR5.674e-3669.81rRNA 2'-O-methyltransferase fibrillarin OS=Neurosp... [more]
FBRL_ENCCU7.410e-3660.00rRNA 2'-O-methyltransferase fibrillarin OS=Encepha... [more]
FBRL_GIALA1.599e-3060.71rRNA 2'-O-methyltransferase fibrillarin OS=Giardia... [more]
FLPA_METKA5.508e-2347.32Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_THESM1.603e-2250.46Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_PYRAE1.039e-2150.00Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_SULIY1.772e-2139.64Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_SULIN1.772e-2139.64Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_SULIM1.772e-2139.64Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_SULIL1.772e-2139.64Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CH09ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1CH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872638 ID=FC872638; Name=FC872638; organism=Citrus clementina; type=EST; length=601bp
CGGGCCGGGGGCAAAGAAGAGAACTAATGTTATACCCATAATTGAAGATG
CTAGACATCCTGCCAAGTACCGTATGTTGGTCGGTATGGTAGATGTAATA
TTTTCTGACGTTGCCCAACCGGATCAGGCGAGGATTTTAGCCCTGAATGC
ATCATATTTTCTCAAAGCTGGAGGTCATTTTGTTATTTCTATCAAGGCAA
ACTGCATAGATTCCACTGTTCCTGCTGAGGCAGTGTTCCAGAGTGAAGTT
AAGAAGCTGCAACAGGATCAGTTCAAACCCTTTGAGCAAGTGACACTCGA
GCCCTTTGAGCGAGATCACGCCTGTGTTGTTGGTGGCTACCGTATGCCAA
AGAAACAGAAGGCTTAGACCATCATCGGACATCCACCATTTTGTTGTATC
CAAACATTAATGCTGGAGTCGTTGATTTTGTAGTAGCTAGCTGGGATGAA
CAATTTTGTGCTATCTGACCTTGTTATGTTTTATTGAGATTCTTTGCGTG
GAACCTCATTGTGAAAATGCTTGTTAAAACCCTTTGATCATGTAGCGAAA
TCTCAATCGTTCGTCCTGTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A
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