FC872638

Overview
NameFC872638
Unique NameFC872638
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length601
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FLPA_SULIK (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=flpA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.772e-21
Identity = 44/111 (39.64%), Postives = 74/111 (66.67%), Query Frame = 2
Query:   11 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYR 343
            A++R N+ P++ DAR P  Y+ +V  VDV++ D+AQPDQ  I   NA +FLK  G+ ++ IKA  ID T   + ++++EV+KL+   F+  + + L+P+++DHA V+  Y+
Sbjct:  121 AQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNARFFLKVNGYMLLVIKARSIDVTKDPKEIYKAEVEKLENSNFETIQIINLDPYDKDHAIVLSRYK 231          
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FLPA_SULIA (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Sulfolobus islandicus (strain M.16.27) GN=flpA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.772e-21
Identity = 44/111 (39.64%), Postives = 74/111 (66.67%), Query Frame = 2
Query:   11 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYR 343
            A++R N+ P++ DAR P  Y+ +V  VDV++ D+AQPDQ  I   NA +FLK  G+ ++ IKA  ID T   + ++++EV+KL+   F+  + + L+P+++DHA V+  Y+
Sbjct:  121 AQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNARFFLKVNGYMLLVIKARSIDVTKDPKEIYKAEVEKLENSNFETIQIINLDPYDKDHAIVLSRYK 231          
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FLPA_THEON (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Thermococcus onnurineus (strain NA1) GN=flpA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.314e-21
Identity = 55/109 (50.46%), Postives = 74/109 (67.89%), Query Frame = 2
Query:    5 PGAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVV 331
            P  ++R N++PI+ DA  P  YR LV  VDVIF DVAQP QA+IL  NA  FLK+GG+ +IS+K+  ID T   E VF+ EV+K     F+  E+++LEP+E+DHA  V
Sbjct:  115 PIVEERRNIVPILGDATKPEGYRALVPKVDVIFEDVAQPTQAKILIDNAKVFLKSGGYGMISVKSRSIDVTKEPEQVFK-EVEKELATYFEVVERLSLEPYEKDHALFV 222          
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FLPA_SULTO (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Sulfolobus tokodaii GN=flpA PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.314e-21
Identity = 47/111 (42.34%), Postives = 73/111 (65.77%), Query Frame = 2
Query:   11 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYR 343
            A+ R N+ PI+ DAR P  YR LV  VDV++ D+AQPD+  I   NA +FLK GG+ +++IKA  ID T     +++ EV KL+++ F   + + L+P+++DHA V+  Y+
Sbjct:  121 AQHRPNLFPILADARFPQYYRTLVEDVDVLYVDIAQPDETDIAIYNAKFFLKNGGYMMMAIKARSIDVTKEPTEIYEMEVNKLKENNFDVIQVIQLDPYDKDHAMVLAKYK 231          
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FLPA_SULSO (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Sulfolobus solfataricus GN=flpA PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.022e-21
Identity = 44/111 (39.64%), Postives = 73/111 (65.77%), Query Frame = 2
Query:   11 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYR 343
            A++R N+ P++ DAR P  Y+ +V  VDV++ D+AQPDQ  I   NA +FLK  G  ++ IKA  ID T   + ++++EV+KL+   F+  + + L+P+++DHA V+  Y+
Sbjct:  121 AQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDPYDKDHAIVLSKYK 231          
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FLPA_STAMF (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=flpA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.022e-21
Identity = 49/108 (45.37%), Postives = 73/108 (67.59%), Query Frame = 2
Query:   20 RTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYR 343
            R N+ PI+ DAR P +YR LV MVD I++D+AQP+QA I+A NA YFLK  G+ +++IKA  ID T     +++ E+  L++  F+  + V LEP+++DHA V   Y+
Sbjct:  125 RKNLYPILGDARKPKEYRHLVEMVDGIYADIAQPEQAAIVADNADYFLKDNGYLLLAIKARSIDVTKEPSEIYRREINTLKERGFEIIDVVHLEPYDKDHAMVYARYK 232          
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FLPA_METVO (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanococcus voltae GN=flpA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.022e-21
Identity = 49/105 (46.67%), Postives = 70/105 (66.67%), Query Frame = 2
Query:   20 RTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVG 334
            R N+ PI+ DA  P +Y  +V  VDVIF DVAQP+QA IL  NA +FLK GG+ +ISIKA  +D T     +F+++ + ++Q+ FK  + + +EPFE+DH   VG
Sbjct:  119 RKNLFPILGDANKPEEYANIVEKVDVIFEDVAQPNQAEILIKNAKWFLKKGGYGMISIKARSVDVTENPRVIFEAQKEIMEQNGFKIVDAINIEPFEKDHMLFVG 223          
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FLPA_THEGJ (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=flpA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.947e-21
Identity = 54/109 (49.54%), Postives = 74/109 (67.89%), Query Frame = 2
Query:    5 PGAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVV 331
            P  ++R N++PI+ DA  P  YR LV  VDVIF DVAQP QA+IL  NA  FLK+GG+ +IS+K+  ID T   E VF+ EV++     F+  E+++LEP+E+DHA  V
Sbjct:  115 PIVEERRNIVPILGDATKPEGYRALVPKVDVIFEDVAQPTQAKILIDNAKVFLKSGGYGMISVKSRSIDVTKEPEEVFK-EVERELASYFEVVERLSLEPYEKDHALFV 222          
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FLPA_PYRKO (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Pyrococcus kodakaraensis GN=flpA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.947e-21
Identity = 54/109 (49.54%), Postives = 74/109 (67.89%), Query Frame = 2
Query:    5 PGAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVV 331
            P  ++R N++PI+ DA  P  YR LV  VDVIF DVAQP QA+IL  NA  +LK+GG+ +IS+K+  ID T   E VF+ EV+K     F+  E+++LEP+E+DHA  V
Sbjct:  115 PLVEERRNIVPILGDATKPEGYRALVPKVDVIFEDVAQPTQAKILIDNAKVYLKSGGYGMISVKSRSIDVTKEPEQVFK-EVEKELSTYFEVVERLSLEPYEKDHALFV 222          
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FLPA_PYRIL (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=flpA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.947e-21
Identity = 52/104 (50.00%), Postives = 69/104 (66.35%), Query Frame = 2
Query:   20 RTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVV 331
            R NV+PI+ DAR P +Y   V  VDV++ DVAQP QA+ILA NA YFLK GG+ ++ IKA  ID T PA   F+ E+  L++  F+  E V LEP++  HA V+
Sbjct:  128 RRNVVPILGDARFPYQYAHYVKGVDVVYIDVAQPAQAKILADNADYFLKPGGYVMLVIKAMSIDVTAPATETFKQEINTLKERGFEILETVHLEPYDTAHAMVI 231          
The following BLAST results are available for this feature:
BLAST of FC872638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
FLPA_SULIK1.772e-2139.64Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_SULIA1.772e-2139.64Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_THEON2.314e-2150.46Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_SULTO2.314e-2142.34Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_SULSO3.022e-2139.64Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_STAMF3.022e-2145.37Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METVO3.022e-2146.67Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_THEGJ3.947e-2149.54Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_PYRKO3.947e-2149.54Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_PYRIL3.947e-2150.00Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CH09ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1CH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872638 ID=FC872638; Name=FC872638; organism=Citrus clementina; type=EST; length=601bp
CGGGCCGGGGGCAAAGAAGAGAACTAATGTTATACCCATAATTGAAGATG
CTAGACATCCTGCCAAGTACCGTATGTTGGTCGGTATGGTAGATGTAATA
TTTTCTGACGTTGCCCAACCGGATCAGGCGAGGATTTTAGCCCTGAATGC
ATCATATTTTCTCAAAGCTGGAGGTCATTTTGTTATTTCTATCAAGGCAA
ACTGCATAGATTCCACTGTTCCTGCTGAGGCAGTGTTCCAGAGTGAAGTT
AAGAAGCTGCAACAGGATCAGTTCAAACCCTTTGAGCAAGTGACACTCGA
GCCCTTTGAGCGAGATCACGCCTGTGTTGTTGGTGGCTACCGTATGCCAA
AGAAACAGAAGGCTTAGACCATCATCGGACATCCACCATTTTGTTGTATC
CAAACATTAATGCTGGAGTCGTTGATTTTGTAGTAGCTAGCTGGGATGAA
CAATTTTGTGCTATCTGACCTTGTTATGTTTTATTGAGATTCTTTGCGTG
GAACCTCATTGTGAAAATGCTTGTTAAAACCCTTTGATCATGTAGCGAAA
TCTCAATCGTTCGTCCTGTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A
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