FC872638

Overview
NameFC872638
Unique NameFC872638
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length601
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FLPA_METJA (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanocaldococcus jannaschii GN=flpA PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.947e-21
Identity = 50/106 (47.17%), Postives = 71/106 (66.98%), Query Frame = 2
Query:   17 KRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVG 334
            +R N+IPI+ DA  P +Y  +V  VDVI+ DVAQP+QA IL  NA +FLK GG+ +I+IKA  ID T   + +F+ + + L+   FK  ++V +EPFE+DH   VG
Sbjct:  120 ERENIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEVDIEPFEKDHVMFVG 225          
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FLPA_PYRCJ (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=flpA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.156e-21
Identity = 52/104 (50.00%), Postives = 68/104 (65.38%), Query Frame = 2
Query:   20 RTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVV 331
            R NVIPI+ DAR P +Y   +  VDV++ DVAQP QA+ILA NA YFLK GG+ ++ IKA  ID T PA   F+ E+  L++  F   E V LEP++  HA V+
Sbjct:  128 RRNVIPILGDARFPYQYAHYIKGVDVVYIDVAQPAQAKILADNADYFLKPGGYVMLVIKAMSIDVTAPATETFKQEINTLKERGFDVLETVHLEPYDTAHAMVI 231          
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FLPA_PYRAB (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Pyrococcus abyssi GN=flpA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.156e-21
Identity = 53/109 (48.62%), Postives = 73/109 (66.97%), Query Frame = 2
Query:    5 PGAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVV 331
            P  + R N++PI+ DA  P +YR LV  VDVIF DVAQP QA+IL  NA  +LK GG+ +I++K+  ID T   E VF+ EV+K   + F+  E++ LEP+E+DHA  V
Sbjct:  116 PIVEDRKNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKKGGYGMIAVKSRSIDVTKEPEQVFR-EVEKELSEYFEVIERLNLEPYEKDHALFV 223          
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FLPA_THENV (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=flpA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.733e-21
Identity = 54/108 (50.00%), Postives = 69/108 (63.89%), Query Frame = 2
Query:   20 RTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYR 343
            R NV+PI+ DAR P +Y   V  VDV + DVAQP QA+ILA NA YFLK GG+ ++ IKA  ID T PA   F+ E+  L++  F+  E V LEP++  HA VV   R
Sbjct:  128 RRNVVPILGDARFPYQYAHYVKGVDVAYIDVAQPAQAKILADNADYFLKPGGYVMLVIKAMSIDVTAPATETFKQEINTLKERGFEILETVHLEPYDTAHAMVVARKR 235          
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FLPA_PYRHO (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Pyrococcus horikoshii GN=flpA PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.733e-21
Identity = 52/109 (47.71%), Postives = 74/109 (67.89%), Query Frame = 2
Query:    5 PGAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVV 331
            P  ++R N++PI+ DA  P +YR LV  VDVIF DVAQP QA+IL  NA  +LK GG+ +I++K+  ID T   E VF+ EV++   + F+  E++ LEP+E+DHA  V
Sbjct:  116 PIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFR-EVERELSEYFEVIERLNLEPYEKDHALFV 223          
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FLPA_PYRFU (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Pyrococcus furiosus GN=flpA PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.733e-21
Identity = 53/109 (48.62%), Postives = 74/109 (67.89%), Query Frame = 2
Query:    5 PGAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVV 331
            P  ++R N+IPI+ DA  P +YR LV  VDVIF DVAQP QA+IL  NA  +LK GG+ +I++K+  ID T   E VF+ EV++   + F+  E++ LEP+E+DHA  V
Sbjct:  116 PIVEERRNIIPILGDATKPEEYRALVTKVDVIFEDVAQPTQAKILIDNAKAYLKRGGYGMIAVKSRSIDVTKEPEQVFK-EVERELSEYFEVIERLNLEPYEKDHALFV 223          
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FLPA_PYRAR (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=flpA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.149e-20
Identity = 50/104 (48.08%), Postives = 69/104 (66.35%), Query Frame = 2
Query:   20 RTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVV 331
            R NV+PI+ DAR P +Y   +  VDV++ DVAQP QA+ILA NA YFLK GG+ ++ IKA  ID T PA   F+ E+  L++  ++  E V LEP++  HA V+
Sbjct:  128 RRNVVPILGDARFPYQYAHYIKGVDVVYIDVAQPAQAKILADNADYFLKPGGYVMLVIKAMSIDVTAPATETFKQEINTLKERGYEILETVHLEPYDTAHAMVI 231          
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FLPA_METVS (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=flpA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.559e-20
Identity = 50/106 (47.17%), Postives = 68/106 (64.15%), Query Frame = 2
Query:   17 KRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVG 334
            +R N+IPI+ DA  P +Y  +VG VDVIF DVAQP+QA IL  NA +FL   G+ +ISIKA  ID T   + +F  + K L +  F   +++ +EPFE+DH   VG
Sbjct:  120 ERINLIPILGDANRPFEYSNIVGKVDVIFEDVAQPNQAEILVKNAKWFLNKDGYAMISIKARSIDVTKNPKEIFLEQKKILIEGGFDIVDEINIEPFEKDHIMFVG 225          
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FLPA_METMP (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanococcus maripaludis GN=flpA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.559e-20
Identity = 49/106 (46.23%), Postives = 68/106 (64.15%), Query Frame = 2
Query:   17 KRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVG 334
            +R N+IP++ DA  P  Y  +V  VDVIF DVAQP+QA IL  NA +FLK  G+ +ISIKA  +D T     +F  + K L +  F+  ++V +EPFE+DH  +VG
Sbjct:  120 ERKNLIPVLGDANRPQDYSNIVEKVDVIFEDVAQPNQAEILVKNAKWFLKENGYAMISIKARSVDVTKNPREIFAEQKKILIEGGFEIVDEVNIEPFEKDHMMMVG 225          
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FLPA_METM6 (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=flpA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.559e-20
Identity = 49/106 (46.23%), Postives = 68/106 (64.15%), Query Frame = 2
Query:   17 KRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVG 334
            +R N+IP++ DA  P  Y  +V  VDVIF DVAQP+QA IL  NA +FLK  G+ +ISIKA  +D T     +F  + K L +  F+  ++V +EPFE+DH  +VG
Sbjct:  120 ERKNLIPVLGDANRPQDYSNIVEKVDVIFEDVAQPNQAEILVKNAKWFLKENGYAMISIKARSVDVTKNPREIFAEQKKILIEGGFEIVDEVNIEPFEKDHMMMVG 225          
The following BLAST results are available for this feature:
BLAST of FC872638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
FLPA_METJA3.947e-2147.17Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_PYRCJ5.156e-2150.00Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_PYRAB5.156e-2148.62Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_THENV6.733e-2150.00Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_PYRHO6.733e-2147.71Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_PYRFU6.733e-2148.62Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_PYRAR1.149e-2048.08Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METVS2.559e-2047.17Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METMP2.559e-2046.23Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METM62.559e-2046.23Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CH09ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1CH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872638 ID=FC872638; Name=FC872638; organism=Citrus clementina; type=EST; length=601bp
CGGGCCGGGGGCAAAGAAGAGAACTAATGTTATACCCATAATTGAAGATG
CTAGACATCCTGCCAAGTACCGTATGTTGGTCGGTATGGTAGATGTAATA
TTTTCTGACGTTGCCCAACCGGATCAGGCGAGGATTTTAGCCCTGAATGC
ATCATATTTTCTCAAAGCTGGAGGTCATTTTGTTATTTCTATCAAGGCAA
ACTGCATAGATTCCACTGTTCCTGCTGAGGCAGTGTTCCAGAGTGAAGTT
AAGAAGCTGCAACAGGATCAGTTCAAACCCTTTGAGCAAGTGACACTCGA
GCCCTTTGAGCGAGATCACGCCTGTGTTGTTGGTGGCTACCGTATGCCAA
AGAAACAGAAGGCTTAGACCATCATCGGACATCCACCATTTTGTTGTATC
CAAACATTAATGCTGGAGTCGTTGATTTTGTAGTAGCTAGCTGGGATGAA
CAATTTTGTGCTATCTGACCTTGTTATGTTTTATTGAGATTCTTTGCGTG
GAACCTCATTGTGAAAATGCTTGTTAAAACCCTTTGATCATGTAGCGAAA
TCTCAATCGTTCGTCCTGTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A
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