FC872638

Overview
NameFC872638
Unique NameFC872638
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length601
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FLPA_METWO (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanobacterium wolfei GN=flpA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.314e-16
Identity = 40/104 (38.46%), Postives = 62/104 (59.62%), Query Frame = 2
Query:   20 RTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVV 331
            R N++P++EDA  P  Y  +V   D+++ DVAQPDQ  +   N   FLK  G+ +I +KA  ID T     +F+ E  KL+   F+  +QV L+P+E+DH  ++
Sbjct:  114 RGNMVPLLEDASRPLDYMRMVENADLVYCDVAQPDQTGLFIRNMDCFLKDDGYGLIMVKARSIDVTRSPRKIFREEAGKLRDSGFRIIDQVGLKPYEKDHMAIL 217          
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FLPA_NANEQ (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Nanoarchaeum equitans GN=flpA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.453e-15
Identity = 41/114 (35.96%), Postives = 65/114 (57.02%), Query Frame = 2
Query:   11 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVVGGYRMPK 352
            AKKR N++PI+ DA  P  Y+ +V   DVI+ DVAQP Q  I   N  +F K      +++KA  ID T   + +F+   +KL++ + +  E + L+P+ +DH   V   ++PK
Sbjct:  119 AKKRKNIVPILADANQPETYQHIVVQSDVIYQDVAQPHQVEIFLKNLRFFAKPNAIGFLAVKARSIDVTKDPKVIFREVERKLREAKLQLLESIRLDPYHKDHMMFV--VKVPK 230          
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FLPA_METTP (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=flpA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.453e-15
Identity = 45/107 (42.06%), Postives = 65/107 (60.75%), Query Frame = 2
Query:   11 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVV 331
            A++R N+IP++ DA  P  YR +V  VD+++ DVAQ +QA I + NAS +LK  G  V+ IKA  IDST  +  +F  E+++L     +   +V L P  RDH  VV
Sbjct:  104 AEQRENIIPVLGDAARPETYRRIVEPVDLLYQDVAQRNQAEIASRNASIYLKPNGLMVVMIKARSIDSTARSTEIFDEEIRRL--SGVEVLRRVDL-PHHRDHVAVV 207          
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FLPA_HALMA (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Haloarcula marismortui GN=flpA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.836e-11
Identity = 40/107 (37.38%), Postives = 58/107 (54.21%), Query Frame = 2
Query:   11 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVV 331
            A+ R N+ P+++DAR P  Y  +V  VDV+  DVA   QAR+  LN   FL   G  + +IKA   D T   +AVF S V+     +++  E   L+P+  DH  +V
Sbjct:  100 AESRRNLFPLLKDARKPESYAHVVEPVDVVVQDVATRGQARVATLN-KQFLTDDGRLLAAIKARSEDVTADPDAVFDS-VRAELSAEYELLETARLDPYHEDHLGIV 204          
BLAST of FC872638 vs. ExPASy Swiss-Prot
Match: FLPA_METMJ (Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=flpA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.837e-11
Identity = 37/108 (34.26%), Postives = 61/108 (56.48%), Query Frame = 2
Query:   11 AKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCID-STVPAEAVFQSEVKKLQQDQFKPFEQVTLEPFERDHACVV 331
            A++R N++PI+ DA  P +Y   +  VD+++ DVAQP+Q  I   N   FLK GGH V+ +K   +D    PAE +  +  +   +++    +   L+P+  DHA +V
Sbjct:   91 ARRRRNIVPIMADASRPEEYAPFMEAVDLVYQDVAQPNQVEIAERNL-VFLKPGGHLVLMLKTRSVDVRRDPAEVL--AGARTGLEERLDIADVRWLDPYHHDHAAIV 195          
The following BLAST results are available for this feature:
BLAST of FC872638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
FLPA_METWO1.314e-1638.46Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_NANEQ1.453e-1535.96Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METTP1.453e-1542.06Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_HALMA2.836e-1137.38Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]
FLPA_METMJ4.837e-1134.26Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CH09ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1CH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872638 ID=FC872638; Name=FC872638; organism=Citrus clementina; type=EST; length=601bp
CGGGCCGGGGGCAAAGAAGAGAACTAATGTTATACCCATAATTGAAGATG
CTAGACATCCTGCCAAGTACCGTATGTTGGTCGGTATGGTAGATGTAATA
TTTTCTGACGTTGCCCAACCGGATCAGGCGAGGATTTTAGCCCTGAATGC
ATCATATTTTCTCAAAGCTGGAGGTCATTTTGTTATTTCTATCAAGGCAA
ACTGCATAGATTCCACTGTTCCTGCTGAGGCAGTGTTCCAGAGTGAAGTT
AAGAAGCTGCAACAGGATCAGTTCAAACCCTTTGAGCAAGTGACACTCGA
GCCCTTTGAGCGAGATCACGCCTGTGTTGTTGGTGGCTACCGTATGCCAA
AGAAACAGAAGGCTTAGACCATCATCGGACATCCACCATTTTGTTGTATC
CAAACATTAATGCTGGAGTCGTTGATTTTGTAGTAGCTAGCTGGGATGAA
CAATTTTGTGCTATCTGACCTTGTTATGTTTTATTGAGATTCTTTGCGTG
GAACCTCATTGTGAAAATGCTTGTTAAAACCCTTTGATCATGTAGCGAAA
TCTCAATCGTTCGTCCTGTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A
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