FC872655

Overview
NameFC872655
Unique NameFC872655
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length774
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_THEP3 (50S ribosomal protein L11 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplK PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.081e-12
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            G+E GS  P +QKVGKIT EQLR IA  K+ DLN + IE+AMR+IAGTA +MGI+I
Sbjct:   84 GIESGSPQPNKQKVGKITREQLREIAEIKMKDLNASDIEAAMRMIAGTARSMGIEI 139          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_PROMM (50S ribosomal protein L11 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplK PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.081e-12
Identity = 36/56 (64.29%), Postives = 41/56 (73.21%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            G+EKGS +    KVG ++  QL  IA  KLPDLNCTSIESAMRII GTA NMG+ I
Sbjct:   84 GIEKGSGESAHGKVGSLSRSQLEEIAKTKLPDLNCTSIESAMRIIEGTARNMGVSI 139          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_THETN (50S ribosomal protein L11 OS=Thermoanaerobacter tengcongensis GN=rplK PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.024e-12
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            G+E GS  P +QKVGKIT +QLR IA  K+ DLN T IE+AMR+IAGTA +MGI+I
Sbjct:   84 GIESGSPQPNKQKVGKITKQQLREIAEIKMRDLNTTDIEAAMRMIAGTARSMGIEI 139          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_SYNE7 (50S ribosomal protein L11 OS=Synechococcus elongatus (strain PCC 7942) GN=rplK PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.024e-12
Identity = 34/56 (60.71%), Postives = 43/56 (76.79%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            G+E+GS +P + KVGKIT  QLR IA  KLPDLN  ++E+AMRI+ GTA NMG+ I
Sbjct:   84 GIERGSGNPNKTKVGKITTAQLREIAETKLPDLNTKNVEAAMRIVEGTARNMGVTI 139          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_SULSY (50S ribosomal protein L11 OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=rplK PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.024e-12
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 194
            G++ GS DPK+ KVGKIT+ QLR IA  KL DLN   IE AMR IAGTA +MGI+I+
Sbjct:   85 GIKTGSGDPKRNKVGKITVNQLREIAEMKLKDLNTEDIEMAMRTIAGTARSMGIEIE 141          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_CYAP8 (50S ribosomal protein L11 OS=Cyanothece sp. (strain PCC 8801) GN=rplK PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.024e-12
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            GVE+GS  P + KVG IT +QLR IA  K+PDLN   IE+AM+I+AGTA NMG+ I
Sbjct:   84 GVERGSNQPNKTKVGSITQDQLREIAQTKMPDLNANDIEAAMKIVAGTARNMGVTI 139          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_CYAP7 (50S ribosomal protein L11 OS=Cyanothece sp. (strain PCC 7424) GN=rplK PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.024e-12
Identity = 33/56 (58.93%), Postives = 43/56 (76.79%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            GVE+GS +P ++ VG IT +QLR IA  K+PDLN   IE+AM+I+AGTA NMGI +
Sbjct:   84 GVERGSNEPNKKNVGSITQDQLREIAQTKMPDLNANDIEAAMKIVAGTARNMGISV 139          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_GLOVI (50S ribosomal protein L11 OS=Gloeobacter violaceus GN=rplK PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.864e-12
Identity = 36/56 (64.29%), Postives = 42/56 (75.00%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            GVEKGS  P ++K G IT  QLR IA +KLPDLN   +E+AM+IIAGTA NMGI I
Sbjct:   84 GVEKGSGKPNKEKAGTITGAQLRQIAEQKLPDLNANDVEAAMKIIAGTARNMGIVI 139          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_AQUAE (50S ribosomal protein L11 OS=Aquifex aeolicus GN=rplK PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.864e-12
Identity = 33/57 (57.89%), Postives = 45/57 (78.95%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 194
            GVEKGS DPK+ KVGKIT++QL  IA  K+ D+N   +++AMR +AGTA +MGI+I+
Sbjct:   85 GVEKGSSDPKRVKVGKITVKQLEEIAKMKMKDMNTRDLKAAMRTVAGTAKSMGIEIE 141          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_SYNY3 (50S ribosomal protein L11 OS=Synechocystis sp. (strain PCC 6803) GN=rplK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.964e-12
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 194
            GVEKGS +P + KV  IT EQLR IA  KLPDLN   I++AM II GTA NMGI ++
Sbjct:   84 GVEKGSSEPNKNKVASITREQLREIAQTKLPDLNANDIDAAMNIIEGTARNMGITVN 140          
The following BLAST results are available for this feature:
BLAST of FC872655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
RL11_THEP33.081e-1264.2950S ribosomal protein L11 OS=Thermoanaerobacter ps... [more]
RL11_PROMM3.081e-1264.2950S ribosomal protein L11 OS=Prochlorococcus marin... [more]
RL11_THETN4.024e-1264.2950S ribosomal protein L11 OS=Thermoanaerobacter te... [more]
RL11_SYNE74.024e-1260.7150S ribosomal protein L11 OS=Synechococcus elongat... [more]
RL11_SULSY4.024e-1263.1650S ribosomal protein L11 OS=Sulfurihydrogenibium ... [more]
RL11_CYAP84.024e-1260.7150S ribosomal protein L11 OS=Cyanothece sp. (strai... [more]
RL11_CYAP74.024e-1258.9350S ribosomal protein L11 OS=Cyanothece sp. (strai... [more]
RL11_GLOVI6.864e-1264.2950S ribosomal protein L11 OS=Gloeobacter violaceus... [more]
RL11_AQUAE6.864e-1257.8950S ribosomal protein L11 OS=Aquifex aeolicus GN=r... [more]
RL11_SYNY38.964e-1261.4050S ribosomal protein L11 OS=Synechocystis sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3BF05ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3BF05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872655 ID=FC872655; Name=FC872655; organism=Citrus clementina; type=EST; length=774bp
GGGCACTGAACTGATTGATAATAGGGGTGGAGAAGGGTTCAAAAGATCCA
AAGCAACAGAAAGTGGGGAAGATCACCATTGAACAATTGCGGGCCATTGC
CACGGAAAAGCTTCCAGATTTGAATTGCACTTCTATTGAATCAGCAATGA
GAATTATAGCAGGTACTGCGGCTAACATGGGTATTGATATTGACCCTCCA
GTTCTTGAGACCAAAAAGAAGGAACTTTGATTATTTCATTGTTGCCTTGA
TTTTGCTATAGTTGTGGGTTTAGCAGTCGCTTCAAAGTTCATGATGTACG
ACCAATTTTTGTATGTTTGGGTTATAATTTAGTTTCACTTCATTGGGAAT
TTTACAACAAAGAGTTGATTGCCAGGCCACAATTCCTTCCTGTGAGCCAA
TTTTATTTTATAGGTCAATTTCTTACATCAGTGCTGTTGTGAATGACCAC
CCCGTTTGGTTTGAAAGTTAAATCATAAGCCAAAAGATTAGGCAATCACG
TGCACACAGTGGAATTTCTGAGTGATATTGATTTGAACATATGCGAAAAG
TGACAAAAAGAGCCTTAATCAGACCATTTCTCAGAACAGGAGATTTGCCA
AGGTGTCAGCACCACAATCCTTCGCACTAACCTCTGATCTTATCATTATC
ATCGACTGTCATCGCAACATTAGATAATTATTTTTGAGGAATGGACAATC
AAATTCATTCGAAATTTACATTATAAACTATAACAATGAGCTCATAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
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