FC872655

Overview
NameFC872655
Unique NameFC872655
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length774
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_PROM5 (50S ribosomal protein L11 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.964e-12
Identity = 35/56 (62.50%), Postives = 41/56 (73.21%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            G+EKGS +  +  VG I+  QL  IA  KLPDLNCTSIESAM++I GTA NMGI I
Sbjct:   84 GIEKGSGESSKGSVGNISKSQLEEIAKTKLPDLNCTSIESAMKVIEGTARNMGISI 139          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_CLOB8 (50S ribosomal protein L11 OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=rplK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.964e-12
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 3
Query:   21 IGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 194
            IG+E GS  P + KVGK+T +QL+ IA  K+PDLN  S+ESAMR+IAGTA +MG+ I+
Sbjct:   83 IGLESGSGVPNKTKVGKLTQDQLKKIAETKMPDLNAASLESAMRMIAGTARSMGVTIE 140          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_SYNP6 (50S ribosomal protein L11 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplK PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.171e-11
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            G+E+GS +P + KVGKIT  QLR IA  KLPD N  ++E+AMRI+ GTA NMG+ I
Sbjct:   84 GIERGSGNPNKTKVGKITTAQLREIAETKLPDFNTKNVEAAMRIVEGTARNMGVTI 139          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_TRIEI (50S ribosomal protein L11 OS=Trichodesmium erythraeum (strain IMS101) GN=rplK PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.529e-11
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            GVE GS +P + KVG IT  QL+ IA  K+PDLN  +IE+AM+I+AGTA NMGI I
Sbjct:   84 GVESGSSEPNRTKVGSITQAQLQEIAQTKMPDLNANNIEAAMKIVAGTARNMGITI 139          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_THESQ (50S ribosomal protein L11 OS=Thermotoga sp. (strain RQ2) GN=rplK PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.529e-11
Identity = 31/56 (55.36%), Postives = 45/56 (80.36%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            G+EKGS +PK++ VGK+T +Q+  IA  K+PDLN  S+E+AM+II GTA +MGI++
Sbjct:   84 GIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEV 139          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_THEMA (50S ribosomal protein L11 OS=Thermotoga maritima GN=rplK PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.529e-11
Identity = 31/56 (55.36%), Postives = 45/56 (80.36%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            G+EKGS +PK++ VGK+T +Q+  IA  K+PDLN  S+E+AM+II GTA +MGI++
Sbjct:   84 GIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEV 139          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_SYNR3 (50S ribosomal protein L11 OS=Synechococcus sp. (strain RCC307) GN=rplK PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.529e-11
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            G+EKGS +  +  VG IT  QL  IA  KLPDLNC+S+ESAMRII GTA NMG+ +
Sbjct:   84 GIEKGSGESAKGSVGSITRAQLEEIANTKLPDLNCSSVESAMRIIEGTARNMGVAV 139          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_SYNPW (50S ribosomal protein L11 OS=Synechococcus sp. (strain WH7803) GN=rplK PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.529e-11
Identity = 36/56 (64.29%), Postives = 40/56 (71.43%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            G+EKGS +  +  VG I   QL  IA  KLPDLNCTSIESAMRII GTA NMG+ I
Sbjct:   84 GIEKGSGESAKGSVGSIKRSQLEEIAKTKLPDLNCTSIESAMRIIEGTARNMGVAI 139          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_FRASC (50S ribosomal protein L11 OS=Frankia sp. (strain CcI3) GN=rplK PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.997e-11
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            GVEKGS  P + KV K+T  Q+R IA  KLPDLN TSIE+A +IIAGTA +MGI +
Sbjct:   87 GVEKGSGTPHRDKVAKLTTAQIREIAQTKLPDLNATSIEAAEKIIAGTARSMGITV 142          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_THEP1 (50S ribosomal protein L11 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplK PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.608e-11
Identity = 31/56 (55.36%), Postives = 45/56 (80.36%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            G+EKGS +PK++ VGK+T +Q+  IA  K+PDLN  S+E+AM+II GTA +MGI++
Sbjct:   84 GLEKGSSEPKRKIVGKVTRKQIEEIARTKMPDLNANSLEAAMKIIEGTAKSMGIEV 139          
The following BLAST results are available for this feature:
BLAST of FC872655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
RL11_PROM58.964e-1262.5050S ribosomal protein L11 OS=Prochlorococcus marin... [more]
RL11_CLOB88.964e-1258.6250S ribosomal protein L11 OS=Clostridium beijerinc... [more]
RL11_SYNP61.171e-1158.9350S ribosomal protein L11 OS=Synechococcus sp. (st... [more]
RL11_TRIEI1.529e-1160.7150S ribosomal protein L11 OS=Trichodesmium erythra... [more]
RL11_THESQ1.529e-1155.3650S ribosomal protein L11 OS=Thermotoga sp. (strai... [more]
RL11_THEMA1.529e-1155.3650S ribosomal protein L11 OS=Thermotoga maritima G... [more]
RL11_SYNR31.529e-1160.7150S ribosomal protein L11 OS=Synechococcus sp. (st... [more]
RL11_SYNPW1.529e-1164.2950S ribosomal protein L11 OS=Synechococcus sp. (st... [more]
RL11_FRASC1.997e-1162.5050S ribosomal protein L11 OS=Frankia sp. (strain C... [more]
RL11_THEP12.608e-1155.3650S ribosomal protein L11 OS=Thermotoga petrophila... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3BF05ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3BF05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872655 ID=FC872655; Name=FC872655; organism=Citrus clementina; type=EST; length=774bp
GGGCACTGAACTGATTGATAATAGGGGTGGAGAAGGGTTCAAAAGATCCA
AAGCAACAGAAAGTGGGGAAGATCACCATTGAACAATTGCGGGCCATTGC
CACGGAAAAGCTTCCAGATTTGAATTGCACTTCTATTGAATCAGCAATGA
GAATTATAGCAGGTACTGCGGCTAACATGGGTATTGATATTGACCCTCCA
GTTCTTGAGACCAAAAAGAAGGAACTTTGATTATTTCATTGTTGCCTTGA
TTTTGCTATAGTTGTGGGTTTAGCAGTCGCTTCAAAGTTCATGATGTACG
ACCAATTTTTGTATGTTTGGGTTATAATTTAGTTTCACTTCATTGGGAAT
TTTACAACAAAGAGTTGATTGCCAGGCCACAATTCCTTCCTGTGAGCCAA
TTTTATTTTATAGGTCAATTTCTTACATCAGTGCTGTTGTGAATGACCAC
CCCGTTTGGTTTGAAAGTTAAATCATAAGCCAAAAGATTAGGCAATCACG
TGCACACAGTGGAATTTCTGAGTGATATTGATTTGAACATATGCGAAAAG
TGACAAAAAGAGCCTTAATCAGACCATTTCTCAGAACAGGAGATTTGCCA
AGGTGTCAGCACCACAATCCTTCGCACTAACCTCTGATCTTATCATTATC
ATCGACTGTCATCGCAACATTAGATAATTATTTTTGAGGAATGGACAATC
AAATTCATTCGAAATTTACATTATAAACTATAACAATGAGCTCATAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
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