FC872655

Overview
NameFC872655
Unique NameFC872655
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length774
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_SYNJA (50S ribosomal protein L11 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplK PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.608e-11
Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = 3
Query:   21 IGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            +G+E GS +P + KVG +T  QLR IA +KLPDLN   +E+AM+IIAGTA +MG+ I
Sbjct:   83 LGIESGSSEPHKVKVGSLTRAQLRQIAEQKLPDLNARDVEAAMKIIAGTARSMGVTI 139          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_PROMP (50S ribosomal protein L11 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplK PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.608e-11
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            G+EKG+ +  +  VG I+  QL  IA  KLPDLNCTSIESAM++I GTA NMG+ I
Sbjct:   84 GIEKGAGESSKGSVGNISKSQLEEIAKTKLPDLNCTSIESAMKVIEGTARNMGVSI 139          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_NOSP7 (50S ribosomal protein L11 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplK PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.608e-11
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 3
Query:   27 VEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            VEKGS +P ++KVG IT  QL+ IA  KLPDLN   I++AM+I+AGTA NMGI +
Sbjct:   85 VEKGSNEPNKKKVGSITKAQLQEIAQTKLPDLNANDIDAAMKIVAGTAKNMGITV 139          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_CHLAD (50S ribosomal protein L11 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=rplK PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.608e-11
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            GV+KGS +PK+  VG IT  QLR IA +KLPD+N   IE+A RIIAGTA +MGI I
Sbjct:   84 GVQKGSSNPKRNPVGTITRAQLRQIAQQKLPDMNANDIEAAERIIAGTARSMGIKI 139          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_ANAVT (50S ribosomal protein L11 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplK PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.608e-11
Identity = 31/55 (56.36%), Postives = 42/55 (76.36%), Query Frame = 3
Query:   27 VEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            +E+GS +P ++KVG IT  QLR IA  KLPDLN   I++AM+I+AGTA NMG+ +
Sbjct:   85 IERGSNEPNKKKVGTITTAQLREIAQTKLPDLNANDIDAAMKIVAGTARNMGVTV 139          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_ANASP (50S ribosomal protein L11 OS=Anabaena sp. (strain PCC 7120) GN=rplK PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.608e-11
Identity = 31/55 (56.36%), Postives = 42/55 (76.36%), Query Frame = 3
Query:   27 VEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            +E+GS +P ++KVG IT  QLR IA  KLPDLN   I++AM+I+AGTA NMG+ +
Sbjct:   85 IERGSNEPNKKKVGTITTAQLREIAQTKLPDLNANDIDAAMKIVAGTARNMGVTV 139          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_SYNJB (50S ribosomal protein L11 OS=Synechococcus sp. GN=rplK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.406e-11
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 3
Query:   21 IGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            +G+E GS +P + KVG +T  QLR IA +KLPDLN   +E+AM+IIAGTA +MG+ +
Sbjct:   83 LGIESGSSEPHKTKVGSLTRAQLRQIAEQKLPDLNAHDVEAAMKIIAGTARSMGVTV 139          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_PROM4 (50S ribosomal protein L11 OS=Prochlorococcus marinus (strain MIT 9211) GN=rplK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.406e-11
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            G+EKGS D  + +VG I   QL  IA  KLPDLNC++IESAMR+I GTA NMG+ +
Sbjct:   84 GIEKGSGDSAKGQVGTINRAQLEEIAKTKLPDLNCSNIESAMRVIEGTARNMGVSV 139          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_PROAC (50S ribosomal protein L11 OS=Propionibacterium acnes GN=rplK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.406e-11
Identity = 29/57 (50.88%), Postives = 46/57 (80.70%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 194
            G++KG+++P   KVGKI+ +Q+R IA  K+PDLN   IE+AM+I+AGTA +MG++++
Sbjct:   86 GIKKGTENPATHKVGKISKDQVREIAETKMPDLNANDIEAAMKIVAGTARSMGVEVE 142          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_NAUPA (50S ribosomal protein L11 OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=rplK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.406e-11
Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            G++KGS +P + KVGKIT  QL+ +A +KLPDLN   IE AM+I+AG+A +MGI+I
Sbjct:   84 GIQKGSSNPLKDKVGKITKAQLKEVAEKKLPDLNTDDIEQAMKILAGSARSMGIEI 139          
The following BLAST results are available for this feature:
BLAST of FC872655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
RL11_SYNJA2.608e-1156.1450S ribosomal protein L11 OS=Synechococcus sp. (st... [more]
RL11_PROMP2.608e-1158.9350S ribosomal protein L11 OS=Prochlorococcus marin... [more]
RL11_NOSP72.608e-1160.0050S ribosomal protein L11 OS=Nostoc punctiforme (s... [more]
RL11_CHLAD2.608e-1162.5050S ribosomal protein L11 OS=Chloroflexus aggregan... [more]
RL11_ANAVT2.608e-1156.3650S ribosomal protein L11 OS=Anabaena variabilis (... [more]
RL11_ANASP2.608e-1156.3650S ribosomal protein L11 OS=Anabaena sp. (strain ... [more]
RL11_SYNJB3.406e-1154.3950S ribosomal protein L11 OS=Synechococcus sp. GN=... [more]
RL11_PROM43.406e-1158.9350S ribosomal protein L11 OS=Prochlorococcus marin... [more]
RL11_PROAC3.406e-1150.8850S ribosomal protein L11 OS=Propionibacterium acn... [more]
RL11_NAUPA3.406e-1157.1450S ribosomal protein L11 OS=Nautilia profundicola... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3BF05ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3BF05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872655 ID=FC872655; Name=FC872655; organism=Citrus clementina; type=EST; length=774bp
GGGCACTGAACTGATTGATAATAGGGGTGGAGAAGGGTTCAAAAGATCCA
AAGCAACAGAAAGTGGGGAAGATCACCATTGAACAATTGCGGGCCATTGC
CACGGAAAAGCTTCCAGATTTGAATTGCACTTCTATTGAATCAGCAATGA
GAATTATAGCAGGTACTGCGGCTAACATGGGTATTGATATTGACCCTCCA
GTTCTTGAGACCAAAAAGAAGGAACTTTGATTATTTCATTGTTGCCTTGA
TTTTGCTATAGTTGTGGGTTTAGCAGTCGCTTCAAAGTTCATGATGTACG
ACCAATTTTTGTATGTTTGGGTTATAATTTAGTTTCACTTCATTGGGAAT
TTTACAACAAAGAGTTGATTGCCAGGCCACAATTCCTTCCTGTGAGCCAA
TTTTATTTTATAGGTCAATTTCTTACATCAGTGCTGTTGTGAATGACCAC
CCCGTTTGGTTTGAAAGTTAAATCATAAGCCAAAAGATTAGGCAATCACG
TGCACACAGTGGAATTTCTGAGTGATATTGATTTGAACATATGCGAAAAG
TGACAAAAAGAGCCTTAATCAGACCATTTCTCAGAACAGGAGATTTGCCA
AGGTGTCAGCACCACAATCCTTCGCACTAACCTCTGATCTTATCATTATC
ATCGACTGTCATCGCAACATTAGATAATTATTTTTGAGGAATGGACAATC
AAATTCATTCGAAATTTACATTATAAACTATAACAATGAGCTCATAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
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