FC872655

Overview
NameFC872655
Unique NameFC872655
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length774
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_SYNS9 (50S ribosomal protein L11 OS=Synechococcus sp. (strain CC9902) GN=rplK PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.449e-11
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            G+EKGS D  +  VG I+  QL  IA  KLPDLNC+S++SAMRII GTA NMG+ +
Sbjct:   84 GIEKGSGDSAKGSVGSISRAQLEEIAKTKLPDLNCSSVDSAMRIIEGTARNMGVAV 139          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_SYNS3 (50S ribosomal protein L11 OS=Synechococcus sp. (strain CC9311) GN=rplK PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.449e-11
Identity = 33/56 (58.93%), Postives = 40/56 (71.43%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            G++KGS +  +  VG I   QL  IA  KLPDLNCTS+ESAMR+I GTA NMG+ I
Sbjct:   84 GIQKGSGESAKGSVGSINRSQLEEIAKTKLPDLNCTSVESAMRVIEGTARNMGVAI 139          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_SYNP2 (50S ribosomal protein L11 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplK PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.449e-11
Identity = 33/56 (58.93%), Postives = 40/56 (71.43%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            GVEKGS  P +QK G I+  QL+ IA  K+PDLN   IE+AM I+AGTA NMGI +
Sbjct:   84 GVEKGSAQPNKQKAGSISRAQLQEIAQTKMPDLNANDIEAAMNIVAGTARNMGITV 139          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_GEOLS (50S ribosomal protein L11 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rplK PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.449e-11
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 3
Query:   21 IGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            IG+E GS  P + KVGK+T  Q+  IA +K+PDLN  S+E+AMR + GTA +MG+DI
Sbjct:   83 IGIESGSSVPNKNKVGKLTKAQVEEIAKKKMPDLNAASVEAAMRTVEGTARSMGVDI 139          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_SYNPX (50S ribosomal protein L11 OS=Synechococcus sp. (strain WH8102) GN=rplK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.811e-11
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 3
Query:   27 VEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            +EKGS +  +  VG I   QL  IA  KLPDLNCTS+ESAMRII GTA NMG+ I
Sbjct:   85 IEKGSGESAKGNVGSINRAQLEEIAKTKLPDLNCTSVESAMRIIEGTARNMGVSI 139          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_STRAW (50S ribosomal protein L11 OS=Streptomyces avermitilis GN=rplK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.811e-11
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 194
            GVEKGS +P + KV KIT  Q+R IAT KLPDLN   +++A +IIAGTA +MGI ++
Sbjct:   87 GVEKGSGEPHKTKVAKITQAQVREIATTKLPDLNANDLDAASKIIAGTARSMGITVE 143          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_CYAA5 (50S ribosomal protein L11 OS=Cyanothece sp. (strain ATCC 51142) GN=rplK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.811e-11
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 194
            G+EKGS  P  QKVG I+ +QL+ IA  K+PDLN   I++AM I+ GTA NMG+ I+
Sbjct:   84 GIEKGSAQPNNQKVGSISRDQLKEIAQTKMPDLNANDIDAAMNIVEGTARNMGVTIN 140          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_CLOTE (50S ribosomal protein L11 OS=Clostridium tetani GN=rplK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.811e-11
Identity = 31/58 (53.45%), Postives = 44/58 (75.86%), Query Frame = 3
Query:   21 IGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 194
            +G+E GS  P + KV KIT EQL+ IA  K+PDLN  S+E+AMR++AGTA +MG+ ++
Sbjct:   83 VGIESGSGVPNKTKVAKITKEQLKEIAEMKMPDLNAGSVEAAMRMVAGTARSMGVTVE 140          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_SYNSC (50S ribosomal protein L11 OS=Synechococcus sp. (strain CC9605) GN=rplK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.589e-11
Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = 3
Query:   27 VEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            ++KGS +  +  VG I+  QL  IA  KLPDLNCTSIESAMRII GTA NMG+ I
Sbjct:   85 IQKGSGESAKGSVGSISRAQLEEIAKTKLPDLNCTSIESAMRIIEGTARNMGVSI 139          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_PROMS (50S ribosomal protein L11 OS=Prochlorococcus marinus (strain AS9601) GN=rplK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.589e-11
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            G+EKGS +  +  VG I+  QL  IA  KLPDLNC+S+ESAM++I GTA NMG+ I
Sbjct:   84 GIEKGSGESAKGSVGNISKAQLEEIAKTKLPDLNCSSVESAMKVIEGTARNMGVSI 139          
The following BLAST results are available for this feature:
BLAST of FC872655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
RL11_SYNS94.449e-1158.9350S ribosomal protein L11 OS=Synechococcus sp. (st... [more]
RL11_SYNS34.449e-1158.9350S ribosomal protein L11 OS=Synechococcus sp. (st... [more]
RL11_SYNP24.449e-1158.9350S ribosomal protein L11 OS=Synechococcus sp. (st... [more]
RL11_GEOLS4.449e-1154.3950S ribosomal protein L11 OS=Geobacter lovleyi (st... [more]
RL11_SYNPX5.811e-1161.8250S ribosomal protein L11 OS=Synechococcus sp. (st... [more]
RL11_STRAW5.811e-1157.8950S ribosomal protein L11 OS=Streptomyces avermiti... [more]
RL11_CYAA55.811e-1154.3950S ribosomal protein L11 OS=Cyanothece sp. (strai... [more]
RL11_CLOTE5.811e-1153.4550S ribosomal protein L11 OS=Clostridium tetani GN... [more]
RL11_SYNSC7.589e-1161.8250S ribosomal protein L11 OS=Synechococcus sp. (st... [more]
RL11_PROMS7.589e-1157.1450S ribosomal protein L11 OS=Prochlorococcus marin... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3BF05ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3BF05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872655 ID=FC872655; Name=FC872655; organism=Citrus clementina; type=EST; length=774bp
GGGCACTGAACTGATTGATAATAGGGGTGGAGAAGGGTTCAAAAGATCCA
AAGCAACAGAAAGTGGGGAAGATCACCATTGAACAATTGCGGGCCATTGC
CACGGAAAAGCTTCCAGATTTGAATTGCACTTCTATTGAATCAGCAATGA
GAATTATAGCAGGTACTGCGGCTAACATGGGTATTGATATTGACCCTCCA
GTTCTTGAGACCAAAAAGAAGGAACTTTGATTATTTCATTGTTGCCTTGA
TTTTGCTATAGTTGTGGGTTTAGCAGTCGCTTCAAAGTTCATGATGTACG
ACCAATTTTTGTATGTTTGGGTTATAATTTAGTTTCACTTCATTGGGAAT
TTTACAACAAAGAGTTGATTGCCAGGCCACAATTCCTTCCTGTGAGCCAA
TTTTATTTTATAGGTCAATTTCTTACATCAGTGCTGTTGTGAATGACCAC
CCCGTTTGGTTTGAAAGTTAAATCATAAGCCAAAAGATTAGGCAATCACG
TGCACACAGTGGAATTTCTGAGTGATATTGATTTGAACATATGCGAAAAG
TGACAAAAAGAGCCTTAATCAGACCATTTCTCAGAACAGGAGATTTGCCA
AGGTGTCAGCACCACAATCCTTCGCACTAACCTCTGATCTTATCATTATC
ATCGACTGTCATCGCAACATTAGATAATTATTTTTGAGGAATGGACAATC
AAATTCATTCGAAATTTACATTATAAACTATAACAATGAGCTCATAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
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