FC872655

Overview
NameFC872655
Unique NameFC872655
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length774
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_PROM2 (50S ribosomal protein L11 OS=Prochlorococcus marinus (strain MIT 9215) GN=rplK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.589e-11
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            G+EKGS +  +  VG I+  QL  IA  KLPDLNC+S+ESAM++I GTA NMG+ I
Sbjct:   84 GIEKGSGESAKGSVGNISKAQLEEIAKTKLPDLNCSSVESAMKVIEGTARNMGVSI 139          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_PROM0 (50S ribosomal protein L11 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.589e-11
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            G+EKGS +  +  VG I+  QL  IA  KLPDLNC+S+ESAM++I GTA NMG+ I
Sbjct:   84 GIEKGSGESAKGSVGNISKAQLEEIAKTKLPDLNCSSVESAMKVIEGTARNMGVSI 139          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_PRB01 (50S ribosomal protein L11 OS=Gamma-proteobacterium EBAC31A08 GN=rplK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.589e-11
Identity = 31/59 (52.54%), Postives = 45/59 (76.27%), Query Frame = 3
Query:   18 IIGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 194
            I+G+ KGS +P ++KVGK+T  QL  IA +K PDLN   I++A+ IIAGTA +MG+++D
Sbjct:   83 ILGIAKGSGEPNREKVGKLTRAQLEDIAKQKEPDLNSNDIDAAVLIIAGTARSMGVEVD 141          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_GEOSM (50S ribosomal protein L11 OS=Geobacter sp. (strain M21) GN=rplK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.589e-11
Identity = 30/57 (52.63%), Postives = 45/57 (78.95%), Query Frame = 3
Query:   21 IGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            +G++ GS  P + KVGK+T +Q+R IAT+K+PDLN  S+E+AM+ I GTA +MG++I
Sbjct:   83 LGLQSGSAVPNKTKVGKLTKDQVREIATKKMPDLNAASLEAAMKTIEGTARSMGVEI 139          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_GEOBB (50S ribosomal protein L11 OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=rplK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.589e-11
Identity = 30/57 (52.63%), Postives = 45/57 (78.95%), Query Frame = 3
Query:   21 IGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            +G++ GS  P + KVGK+T +Q+R IAT+K+PDLN  S+E+AM+ I GTA +MG++I
Sbjct:   83 LGLQSGSAVPNKTKVGKLTKDQVREIATKKMPDLNAASLEAAMKTIEGTARSMGVEI 139          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_GEMAT (50S ribosomal protein L11 OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=rplK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.589e-11
Identity = 33/57 (57.89%), Postives = 42/57 (73.68%), Query Frame = 3
Query:   21 IGVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            +GVE+GS  P + KVG IT  QL  IAT K+PDLNC S+ESA+ +IAG A +MGI +
Sbjct:   82 LGVERGSGQPNKVKVGTITRAQLEKIATTKMPDLNCESMESAVAMIAGAARSMGITV 138          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_CLOAB (50S ribosomal protein L11 OS=Clostridium acetobutylicum GN=rplK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.589e-11
Identity = 31/56 (55.36%), Postives = 43/56 (76.79%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDI 191
            G+E GS  P + KVGKIT EQ++ IA  K+PDLN  S+E+AM +IAGTA +MG+++
Sbjct:   84 GIESGSGVPNKNKVGKITKEQVKEIAQTKMPDLNAASLEAAMSMIAGTARSMGVEV 139          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_STRVN (50S ribosomal protein L11 OS=Streptomyces violaceoruber GN=rplK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 194
            GVEKGS +P + KV KIT +Q+R IAT K+PDLN   ++ A +IIAGTA +MG+ ++
Sbjct:   87 GVEKGSGEPHKTKVAKITRDQVREIATTKMPDLNANDLDQAEKIIAGTARSMGVTVE 143          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_STRLI (50S ribosomal protein L11 OS=Streptomyces lividans GN=rplK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 194
            GVEKGS +P + KV KIT +Q+R IAT K+PDLN   ++ A +IIAGTA +MG+ ++
Sbjct:   87 GVEKGSGEPHKTKVAKITRDQVREIATTKMPDLNANDLDQAEKIIAGTARSMGVTVE 143          
BLAST of FC872655 vs. ExPASy Swiss-Prot
Match: RL11_STRCO (50S ribosomal protein L11 OS=Streptomyces coelicolor GN=rplK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 3
Query:   24 GVEKGSKDPKQQKVGKITIEQLRAIATEKLPDLNCTSIESAMRIIAGTAANMGIDID 194
            GVEKGS +P + KV KIT +Q+R IAT K+PDLN   ++ A +IIAGTA +MG+ ++
Sbjct:   87 GVEKGSGEPHKTKVAKITRDQVREIATTKMPDLNANDLDQAEKIIAGTARSMGVTVE 143          
The following BLAST results are available for this feature:
BLAST of FC872655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
RL11_PROM27.589e-1157.1450S ribosomal protein L11 OS=Prochlorococcus marin... [more]
RL11_PROM07.589e-1157.1450S ribosomal protein L11 OS=Prochlorococcus marin... [more]
RL11_PRB017.589e-1152.5450S ribosomal protein L11 OS=Gamma-proteobacterium... [more]
RL11_GEOSM7.589e-1152.6350S ribosomal protein L11 OS=Geobacter sp. (strain... [more]
RL11_GEOBB7.589e-1152.6350S ribosomal protein L11 OS=Geobacter bemidjiensi... [more]
RL11_GEMAT7.589e-1157.8950S ribosomal protein L11 OS=Gemmatimonas aurantia... [more]
RL11_CLOAB7.589e-1155.3650S ribosomal protein L11 OS=Clostridium acetobuty... [more]
RL11_STRVN9.911e-1154.3950S ribosomal protein L11 OS=Streptomyces violaceo... [more]
RL11_STRLI9.911e-1154.3950S ribosomal protein L11 OS=Streptomyces lividans... [more]
RL11_STRCO9.911e-1154.3950S ribosomal protein L11 OS=Streptomyces coelicol... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3BF05ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3BF05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872655 ID=FC872655; Name=FC872655; organism=Citrus clementina; type=EST; length=774bp
GGGCACTGAACTGATTGATAATAGGGGTGGAGAAGGGTTCAAAAGATCCA
AAGCAACAGAAAGTGGGGAAGATCACCATTGAACAATTGCGGGCCATTGC
CACGGAAAAGCTTCCAGATTTGAATTGCACTTCTATTGAATCAGCAATGA
GAATTATAGCAGGTACTGCGGCTAACATGGGTATTGATATTGACCCTCCA
GTTCTTGAGACCAAAAAGAAGGAACTTTGATTATTTCATTGTTGCCTTGA
TTTTGCTATAGTTGTGGGTTTAGCAGTCGCTTCAAAGTTCATGATGTACG
ACCAATTTTTGTATGTTTGGGTTATAATTTAGTTTCACTTCATTGGGAAT
TTTACAACAAAGAGTTGATTGCCAGGCCACAATTCCTTCCTGTGAGCCAA
TTTTATTTTATAGGTCAATTTCTTACATCAGTGCTGTTGTGAATGACCAC
CCCGTTTGGTTTGAAAGTTAAATCATAAGCCAAAAGATTAGGCAATCACG
TGCACACAGTGGAATTTCTGAGTGATATTGATTTGAACATATGCGAAAAG
TGACAAAAAGAGCCTTAATCAGACCATTTCTCAGAACAGGAGATTTGCCA
AGGTGTCAGCACCACAATCCTTCGCACTAACCTCTGATCTTATCATTATC
ATCGACTGTCATCGCAACATTAGATAATTATTTTTGAGGAATGGACAATC
AAATTCATTCGAAATTTACATTATAAACTATAACAATGAGCTCATAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
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