FC872689

Overview
NameFC872689
Unique NameFC872689
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length827
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_CAUCR (ATP synthase gamma chain OS=Caulobacter crescentus GN=atpG PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.432e-18
Identity = 65/185 (35.14%), Postives = 96/185 (51.89%), Query Frame = 2
Query:   47 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVEF---DALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            K+ + V +G+K  A L +     I           L  +    +AD I +  E    D + + YS+F SVV  +PT   ++   +   EA SG        YE E  E    IL+ L     +  + +A+L+N      ++M+AMD+++RNAG+M+ R TL YNR+RQA IT ELIEIISGA A+
Sbjct:  113 KDVRVVCVGKKVTAQLAKPYAGRIVETFDLSSYRQLTLSVAQPIADVITREYEAGETDVVTLFYSRFKSVVQQIPTGLQLIPAVVETGEAASGPTA----VYEYEPSEEA--ILETLLPRNLTVQILSALLDNMAGFYASQMTAMDNATRNAGDMIKRYTLEYNRSRQAQITKELIEIISGAEAV 291          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_CAUCN (ATP synthase gamma chain OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=atpG PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.432e-18
Identity = 65/185 (35.14%), Postives = 96/185 (51.89%), Query Frame = 2
Query:   47 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVEF---DALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            K+ + V +G+K  A L +     I           L  +    +AD I +  E    D + + YS+F SVV  +PT   ++   +   EA SG        YE E  E    IL+ L     +  + +A+L+N      ++M+AMD+++RNAG+M+ R TL YNR+RQA IT ELIEIISGA A+
Sbjct:  113 KDVRVVCVGKKVTAQLAKPYAGRIVETFDLSSYRQLTLSVAQPIADVITREYEAGETDVVTLFYSRFKSVVQQIPTGLQLIPAVVETGEAASGPTA----VYEYEPSEEA--ILETLLPRNLTVQILSALLDNMAGFYASQMTAMDNATRNAGDMIKRYTLEYNRSRQAQITKELIEIISGAEAV 291          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_WOLPM (ATP synthase gamma chain OS=Wolbachia pipientis wMel GN=atpG PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.232e-17
Identity = 65/205 (31.71%), Postives = 108/205 (52.68%), Query Frame = 2
Query:    2 GKISKSLHKLNSGPDKENKYVILGEKA-------KAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGE-ILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            G  + S+ K +   ++ NK +  G+K        KA  V  ++ D + I+       +    V  L D I  + ++D +++ YSKF++  +  P + T+  P   +         G    Y  E      E IL++L +      +++A+LE+A SE  ARM AM+S++RN  E+L++L L YNR+RQA+ITT+LIE+I GA +L
Sbjct:   90 GNFNSSIVKFSQ--ERVNKSIANGKKVDIVFLGKKAFDVGKNRFDSKSILKIENSKGITLKHVEALVDGIDLS-KYDKVKVFYSKFYNTFTQKPMLETI-KPWSKDSSLIDSSLAGPTTDYGYEYEPQNIEFILKSLVQDYVVIALYSALLESATSENSARMVAMESANRNTKEILNKLALLYNRSRQAAITTDLIEVIGGAESL 290          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_DICDI (ATP synthase subunit gamma, mitochondrial OS=Dictyostelium discoideum GN=atp5C1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.101e-17
Identity = 58/179 (32.40%), Postives = 96/179 (53.63%), Query Frame = 2
Query:   71 GEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV-EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDS---YEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 595
            G K  A +V D      +   +  K   ++ +V +  ++I+  V  +D+  ++Y+KF + +S+            V+R+   G  L EL+    YE    E +   +++L+EF  +  ++  + +N  SE  ARM AMD++S+N   +   L L YNR RQA IT+ELIEI+SGASA+E
Sbjct:  136 GLKGVAPIVADFPNQFLINGRDFGKADYSFPEVLLFLNEIISKVPNYDSALVVYNKFKNALSYS-----------VDRQFIPGFNLLELNRDKFYEYTTSEDRAATMKDLSEFYLASSLWTGLYQNRASEMAARMVAMDNASKNGESISQALGLQYNRARQAMITSELIEIVSGASAIE 303          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_STAHJ (ATP synthase gamma chain OS=Staphylococcus haemolyticus (strain JCSC1435) GN=atpG PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.584e-17
Identity = 61/185 (32.97%), Postives = 99/185 (53.51%), Query Frame = 2
Query:   50 ENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLAD---DILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 595
            E   ++LG+     L ++   +IE  + ++   P ++  +  +A    D+      D L+I YS + SV+   PT   VL    + RE  S G+ G++ SYE E    K  IL  +       +++  +L+   SE  ARM+AM ++S NA E++D L+L YNR RQA IT ++ EI+ G++ALE
Sbjct:  112 EYSIIVLGQSGVDFL-KNRGYEIENSLVDVPDQP-SFKSIQAIAKHAIDLFSEEHIDELKIYYSHYVSVLENKPTTKQVLP---LSREDSSQGQ-GQMSSYEFE--PDKESILSVILPQYVESLIYGTILDAKASEHAARMTAMKNASDNATELIDDLSLQYNRARQAEITQQITEIVGGSAALE 288          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_MESFL (ATP synthase gamma chain OS=Mesoplasma florum GN=atpG PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.584e-17
Identity = 60/190 (31.58%), Postives = 99/190 (52.11%), Query Frame = 2
Query:   47 KENKYVILGEKA------KAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALEG 598
            KE++   +G KA      K I +++   D+++  +  Q   +    +S  +       EFD ++I+Y+KF + V+F PT   V  P + E   E+         Y  E   +  E+L N      S ++F  ++E+  SEQ +R  AM++++ N  E+   L++ YNR RQASIT E+ EI+SGA+AL G
Sbjct:  105 KEDQIYAIGSKAVSAYNSKKIKIKNECTDVDIDFSPAQAKQIGNELLSYYSSG-----EFDEIQIVYTKFINNVTFEPTKLRVF-PIIKEETQETSSSY-----YSFE--PSAEEVLNNAVTLYLSTIIFGTIVESQVSEQASRRLAMENATNNGKELEYNLSIQYNRERQASITQEISEIVSGANALMG 281          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_KLULA (ATP synthase subunit gamma, mitochondrial OS=Kluyveromyces lactis GN=ATP3 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.681e-17
Identity = 55/180 (30.56%), Postives = 99/180 (55.00%), Query Frame = 2
Query:   62 VILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKN--VEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 595
            V +G+K K  L+R +  +++     + K    + + S++A+ IL+     +  + I ++   S +SF P+   V +   +E+             +EI+       + Q+L EF  S  +  A+ E   +E  AR +AMD++S+NAG+M++  ++ YNRTRQA IT EL++II+GAS+L+
Sbjct:  120 VAIGDKVKGQLLRTNSDNLKFAFNGVGKEAPTFEETSLIANKILEGGASNYKKVSIFWNDPISSLSFEPSNKPVFNAAAIEQSPS-------FSKFEIDADNN---VSQDLFEFTLSNEILAAMAEGYAAEVSARRNAMDNASKNAGDMINSYSILYNRTRQAVITNELVDIITGASSLD 289          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_ALKMQ (ATP synthase gamma chain OS=Alkaliphilus metalliredigens (strain QYMF) GN=atpG PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.114e-17
Identity = 62/194 (31.96%), Postives = 105/194 (54.12%), Query Frame = 2
Query:   29 LNSGPDKENKYVI-LGEKAKAILVRDSKKDIELIITELQKNPL--NYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVL--SPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 595
            +N   +KE   +I +G+K +    R    D++   T++ +NP   +   +  L  ++ K    D L ++Y++F S ++  P +  +L   P+     AE   +  E  SYE     +  E+L  L       +++ A++E++ S+QGA   AM+S++ NA +M+D L L YNR RQASIT E+ EI+SGA AL+
Sbjct:  101 VNHLQEKERVSIIAIGKKGRGFF-RKRGYDLDGEFTKISENPSFSDAQGIGKLGMELYKQELVDELYLVYTEFVSTITHKPRVVKLLPLEPQTGGEGAEKPKERDEFMSYE----PSPEEVLDYLIPKYIESMLYGALVESSTSQQGATRVAMESATDNATDMIDGLQLQYNRARQASITQEIAEIVSGAEALK 289          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_WOLWR (ATP synthase gamma chain OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=atpG PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.985e-17
Identity = 60/189 (31.75%), Postives = 101/189 (53.44%), Query Frame = 2
Query:   50 ENKYVILGEKA-------KAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGE-ILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            +NK +  G+K        KA  +  ++ D + I+       +    V  L   I  + ++D +++ YSKF++  +  P + T+  P   +         G +  Y  E      E IL++L +      +++A+LE+A SE  ARM AM+S++RN  E+L++L L YNR+RQA+ITT+LIE+I GA +L
Sbjct:  101 QNKLITNGKKVDIVFLGKKAFDIGKNRFDSKSILKIENSKGITLKHVEALVGGIDLS-KYDKVKVFYSKFYNTFTQKPMLETI-KPWSKDSSLIDNSLAGPITDYGYEYEPQNIEFILKSLVQDYVVIALYSALLESATSENSARMVAMESANRNTKEILNKLALLYNRSRQAAITTDLIEVIGGAESL 287          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_STAAW (ATP synthase gamma chain OS=Staphylococcus aureus (strain MW2) GN=atpG PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.985e-17
Identity = 64/185 (34.59%), Postives = 97/185 (52.43%), Query Frame = 2
Query:   50 ENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLAD---DILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 595
            E   V+LG++    L ++   DIE    ++   P ++  V  LA+   D+    E D L I YS + SV+   PT   VL    + +E  S G  G L SYE E    K  IL  +       +++  +L+   SE   RM+AM +++ NA E++D L+L YNR RQA IT ++ EI+ G++ALE
Sbjct:  112 EYSIVVLGQQGVDFL-KNRGYDIEYSQVDVPDQP-SFKSVQALANHAIDLYSEEEIDELNIYYSHYVSVLENKPTSRQVLP---LSQEDSSKGH-GHLSSYEFE--PDKESILSVILPQYVESLIYGTILDAKASEHATRMTAMKNATDNATELIDDLSLEYNRARQAEITQQITEIVGGSAALE 288          
The following BLAST results are available for this feature:
BLAST of FC872689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_CAUCR9.432e-1835.14ATP synthase gamma chain OS=Caulobacter crescentus... [more]
ATPG_CAUCN9.432e-1835.14ATP synthase gamma chain OS=Caulobacter crescentus... [more]
ATPG_WOLPM1.232e-1731.71ATP synthase gamma chain OS=Wolbachia pipientis wM... [more]
ATPG_DICDI2.101e-1732.40ATP synthase subunit gamma, mitochondrial OS=Dicty... [more]
ATPG_STAHJ3.584e-1732.97ATP synthase gamma chain OS=Staphylococcus haemoly... [more]
ATPG_MESFL3.584e-1731.58ATP synthase gamma chain OS=Mesoplasma florum GN=a... [more]
ATPG_KLULA4.681e-1730.56ATP synthase subunit gamma, mitochondrial OS=Kluyv... [more]
ATPG_ALKMQ6.114e-1731.96ATP synthase gamma chain OS=Alkaliphilus metallire... [more]
ATPG_WOLWR7.985e-1731.75ATP synthase gamma chain OS=Wolbachia sp. subsp. D... [more]
ATPG_STAAW7.985e-1734.59ATP synthase gamma chain OS=Staphylococcus aureus ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DB03ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1DB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872689 ID=FC872689; Name=FC872689; organism=Citrus clementina; type=EST; length=827bp
GGGTAAGATAAGCAAGAGTTTGCACAAGTTGAATTCTGGTCCCGACAAAG
AAAACAAATACGTCATCTTGGGAGAGAAGGCAAAGGCAATATTAGTACGT
GACTCAAAGAAAGATATTGAACTCATCATAACTGAGTTACAGAAAAATCC
TCTCAATTATACCCAGGTTTCCGTTCTTGCAGATGATATCTTAAAGAATG
TAGAATTTGATGCTTTGAGGATTATCTATAGCAAGTTCCATTCCGTGGTC
TCCTTTCTGCCGACAATGGCAACTGTATTATCGCCTGAGCTTGTGGAGAG
AGAAGCCGAATCTGGGGGAAAGCTTGGTGAGCTAGACTCCTATGAAATTG
AAGGCGGTGAAACAAAGGGTGAAATACTTCAAAATCTGGCTGAGTTCCAA
TTCTCTTGTGTCATGTTCAATGCGGTGTTGGAGAATGCCTGCAGTGAGCA
AGGGGCAAGGATGTCTGCCATGGATAGCTCAAGCAGAAATGCAGGAGAAA
TGCTTGATCGCCTCACTCTTACTTATAACAGAACTCGTCAAGCATCTATC
ACCACCGAGTTGATTGAGATTATATCTGGAGCATCAGCACTGGAAGGCTG
ATTACAAAAGCGACAGTGCTCACTTTTCTTGACAGTGACGAAATAAATCC
TTGGTGGAGGCTTTGTTCAAACTTCAATGTGGTACTTTCATAAGAGTTTT
TGTTGAGCTACTCCAATAATCTCTCCAGTGTTAAAACTTGGGGAATTAAC
AATTATACTTGCGATATTTTCAATATAGTTTTTGATTCTCAAAAAATAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA
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