FC872689

Overview
NameFC872689
Unique NameFC872689
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length827
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_ZYMMO (ATP synthase gamma chain OS=Zymomonas mobilis GN=atpG PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.318e-24
Identity = 60/154 (38.96%), Postives = 94/154 (61.04%), Query Frame = 2
Query:  140 QKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            + +P+ +     +A D+++     EFD   + +S +HSV+S +PT   ++       + ++     +  S  IE    +  IL  L     +  ++ A+LENA SEQG+RMSAM++S+RNAGEM+ +L++ YNR RQA+ITTEL+EIISGA AL
Sbjct:  145 ETSPVTFENAQKIAQDLIQRFNAGEFDVAHLFFSHYHSVLSQVPTETQIIPAAPEGDDTKNQAAANDASSGAIEFEPDEETILSTLLPRSIAVAIYQAMLENATSEQGSRMSAMENSTRNAGEMISKLSIQYNRLRQAAITTELVEIISGAEAL 298          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_RHOSK (ATP synthase gamma chain OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=atpG PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.318e-24
Identity = 74/185 (40.00%), Postives = 109/185 (58.92%), Query Frame = 2
Query:   47 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            K  K + +G+K +  L RD  +     +   +   + Y     +A D+L      EFD   I +++F SV+S +PT   V+ P + E E    G++  L  YE     ++  +L +L     +  +F A+LEN  SEQGARMSAMD+++RNAG+M++RLT+ YNR+RQA+IT ELIEIISGA AL
Sbjct:  114 KTVKILTVGKKGREQLRRDLGQHFIGHVDLSEVKRMGYPVAQGIARDLLDRFDKGEFDVATIFFARFQSVISQVPTAQQVI-PAVFEGE----GEVSSLYDYE----PSEEGVLADLLPRGVATQIFTALLENGASEQGARMSAMDNATRNAGDMINRLTIEYNRSRQAAITKELIEIISGAEAL 289          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_RHOS1 (ATP synthase gamma chain OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=atpG PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.318e-24
Identity = 74/185 (40.00%), Postives = 109/185 (58.92%), Query Frame = 2
Query:   47 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            K  K + +G+K +  L RD  +     +   +   + Y     +A D+L      EFD   I +++F SV+S +PT   V+ P + E E    G++  L  YE     ++  +L +L     +  +F A+LEN  SEQGARMSAMD+++RNAG+M++RLT+ YNR+RQA+IT ELIEIISGA AL
Sbjct:  114 KTVKILTVGKKGREQLRRDLGQHFIGHVDLSEVKRMGYPVAQGIARDLLDRFDKGEFDVATIFFARFQSVISQVPTAQQVI-PAVFEGE----GEVSSLYDYE----PSEEGVLADLLPRGVATQIFTALLENGASEQGARMSAMDNATRNAGDMINRLTIEYNRSRQAAITKELIEIISGAEAL 289          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_SPHWW (ATP synthase gamma chain OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=atpG PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.954e-24
Identity = 71/186 (38.17%), Postives = 110/186 (59.14%), Query Frame = 2
Query:   47 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKL-GELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            K  K+ ++G+K +A+L R     I   + +     + ++   ++A+D++      EFD   + ++KF S +   PT   ++   L    A++G    G   + E E  E    IL  L     +  +F A+LENA SEQG+RM+AMD+++RNAGEM+++LT+ YNRTRQA+ITTELIEII+GA AL
Sbjct:  114 KTVKFYLIGKKGRAVLQRLFPGKIVHQVDQSHIKNVAFSDAHMVAEDLIGRYSAGEFDVAHLFFAKFQSALVQEPTELQIIPVPLT---ADTGAAATGASAAVEYEPDEEA--ILTELLPRNVAVQLFRAMLENAASEQGSRMTAMDNATRNAGEMINKLTIQYNRTRQAAITTELIEIIAGAEAL 294          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_RHOS4 (ATP synthase gamma chain OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=atpG PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.164e-24
Identity = 73/185 (39.46%), Postives = 109/185 (58.92%), Query Frame = 2
Query:   47 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            K  K + +G+K +  L RD  +     +   +   + Y     +A D+L      EFD   I +++F SV++ +PT   V+ P + E E    G++  L  YE     ++  +L +L     +  +F A+LEN  SEQGARMSAMD+++RNAG+M++RLT+ YNR+RQA+IT ELIEIISGA AL
Sbjct:  114 KTVKILTVGKKGREQLRRDLGQHFIGHVDLSEVKRMGYPVAQGIARDLLDRFDKGEFDVATIFFARFQSVINQVPTAQQVI-PAVFEGE----GEVSSLYDYE----PSEEGVLADLLPRGVATQIFTALLENGASEQGARMSAMDNATRNAGDMINRLTIEYNRSRQAAITKELIEIISGAEAL 289          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_BEII9 (ATP synthase gamma chain OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=atpG PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.164e-24
Identity = 73/185 (39.46%), Postives = 105/185 (56.76%), Query Frame = 2
Query:   47 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDIL---KNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            K+ K + +G+K   +L R   + I  +I       + +     +   IL   K+ EFD   + ++KF +V+  +PT A  L P  V+ + ++      L  YE     ++ +IL  L     +  +  A+LENA SEQGARMSAMD++SRNAGEM+ + TL YNR+RQA IT ELIEIISGA AL
Sbjct:  114 KKVKILCVGKKGYDLLKRQFGEQILELIELRSVRTIGFVNAEAIGRKILNLYKDAEFDVCTLFFAKFRTVLHQIPT-AQQLIPLAVKTQEDAPAAPPSLYEYE----PSEEQILATLLPRNITIQVLRALLENAASEQGARMSAMDNASRNAGEMIKKQTLKYNRSRQAMITKELIEIISGAEAL 293          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_RHOPB (ATP synthase gamma chain OS=Rhodopseudomonas palustris (strain BisB18) GN=atpG PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.744e-24
Identity = 79/196 (40.31%), Postives = 107/196 (54.59%), Query Frame = 2
Query:   14 KSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDIL---KNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            ++L  +N G  KE K   +G K    L R   + I   I       L +     +A  ++    N EFD   + YS+F SV+S +PT   ++ P +VE  A + G      SYE E  E   EIL  L     +  +F A+LEN  S  GA+MSAMD+++RNAG+M+ + TL YNRTRQA IT ELIEIISGA A+
Sbjct:  105 RALSLMNQG--KEVKLFCVGRKGYEQLRRTFDRQIVENIELRSVRQLGFVNAEDIAHKVVARFNNGEFDVCTLFYSRFKSVISQIPTAQQII-PLVVEAPAANAGPA---TSYEYEPEED--EILAGLLPRNLAVQIFRALLENNASFYGAQMSAMDNATRNAGDMIRKQTLIYNRTRQAMITKELIEIISGAEAI 292          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_RHOCS (ATP synthase gamma chain OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=atpG PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.808e-24
Identity = 72/191 (37.70%), Postives = 110/191 (57.59%), Query Frame = 2
Query:   35 SGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVL--SPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            +G  +  K + +G K + +L R+    I     ++ +  L++     +   +L+  E   FD   +IY+KF S ++ + T   V+  +P +    AE+         YE E  E K  IL  L     +  +++A+LE+A SEQGARM+AMD+++RNAG+M+ +LTL YNRTRQASIT ELIEIISGA A+
Sbjct:  110 TGEGRTVKLLCVGRKGRDLLRREYAGMIVHSFEDVGRRRLSFADADRITAKVLELFEAGEFDVATVIYNKFRSAITQVVTAQQVIPFAPAVATEPAETAEAK---PLYEFEPNEEK--ILAELLPRNLAVQVYSALLESAASEQGARMTAMDNATRNAGDMIKKLTLVYNRTRQASITKELIEIISGAEAV 295          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_SINMW (ATP synthase gamma chain OS=Sinorhizobium medicae (strain WSM419) GN=atpG PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.150e-23
Identity = 74/185 (40.00%), Postives = 104/185 (56.22%), Query Frame = 2
Query:   47 KENKYVILGEKAKAILVRDSKKDI--ELIITELQKNPL-NYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            K  K + +G+K   IL R+    I   + + E++K    N  ++     ++  N EFD   + YS+F SV+S +PT   ++     E  AE    + E   YE +       IL +L     S  +F A+LEN   E GA+MSAMD+++RNAGEM+++LTL YNR RQA IT ELIEIISGA AL
Sbjct:  114 KTVKIICVGKKGFDILRREFASLIIDRVDLREVKKIGFENADRIGHKVIELFDNGEFDVCTLFYSEFKSVISQIPTAQQLIPASAGEAVAEGASAIYE---YEPDAAA----ILSDLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGEMINKLTLNYNRQRQAQITKELIEIISGAEAL 291          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_NITWN (ATP synthase gamma chain OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=atpG PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.150e-23
Identity = 79/191 (41.36%), Postives = 104/191 (54.45%), Query Frame = 2
Query:   29 LNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            +N G  KE K+  +G K    L R  +K I   +       L +     +A  +L      EFD   + YS+F SV++ +PT   V+ P  VE  A S G      SYE E  E   EIL  L     +  +F A+LEN  S  GA+M+AMD+++RNAGEM+ + TL YNRTRQA IT ELIEIISGA A+
Sbjct:  110 MNQG--KEVKFFCVGRKGYEQLRRIFEKQIVETVELRTVRQLGFVNAEDIARKVLARFDAGEFDVCTLFYSRFQSVIAQVPTAQQVI-PLAVEDAARSDGPA---PSYEYEPEED--EILNGLLPRNLAVQIFRALLENNASFYGAQMTAMDNATRNAGEMIRKQTLIYNRTRQAMITKELIEIISGAEAV 292          
The following BLAST results are available for this feature:
BLAST of FC872689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_ZYMMO2.318e-2438.96ATP synthase gamma chain OS=Zymomonas mobilis GN=a... [more]
ATPG_RHOSK2.318e-2440.00ATP synthase gamma chain OS=Rhodobacter sphaeroide... [more]
ATPG_RHOS12.318e-2440.00ATP synthase gamma chain OS=Rhodobacter sphaeroide... [more]
ATPG_SPHWW3.954e-2438.17ATP synthase gamma chain OS=Sphingomonas wittichii... [more]
ATPG_RHOS45.164e-2439.46ATP synthase gamma chain OS=Rhodobacter sphaeroide... [more]
ATPG_BEII95.164e-2439.46ATP synthase gamma chain OS=Beijerinckia indica su... [more]
ATPG_RHOPB6.744e-2440.31ATP synthase gamma chain OS=Rhodopseudomonas palus... [more]
ATPG_RHOCS8.808e-2437.70ATP synthase gamma chain OS=Rhodospirillum centenu... [more]
ATPG_SINMW1.150e-2340.00ATP synthase gamma chain OS=Sinorhizobium medicae ... [more]
ATPG_NITWN1.150e-2341.36ATP synthase gamma chain OS=Nitrobacter winogradsk... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DB03ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1DB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872689 ID=FC872689; Name=FC872689; organism=Citrus clementina; type=EST; length=827bp
GGGTAAGATAAGCAAGAGTTTGCACAAGTTGAATTCTGGTCCCGACAAAG
AAAACAAATACGTCATCTTGGGAGAGAAGGCAAAGGCAATATTAGTACGT
GACTCAAAGAAAGATATTGAACTCATCATAACTGAGTTACAGAAAAATCC
TCTCAATTATACCCAGGTTTCCGTTCTTGCAGATGATATCTTAAAGAATG
TAGAATTTGATGCTTTGAGGATTATCTATAGCAAGTTCCATTCCGTGGTC
TCCTTTCTGCCGACAATGGCAACTGTATTATCGCCTGAGCTTGTGGAGAG
AGAAGCCGAATCTGGGGGAAAGCTTGGTGAGCTAGACTCCTATGAAATTG
AAGGCGGTGAAACAAAGGGTGAAATACTTCAAAATCTGGCTGAGTTCCAA
TTCTCTTGTGTCATGTTCAATGCGGTGTTGGAGAATGCCTGCAGTGAGCA
AGGGGCAAGGATGTCTGCCATGGATAGCTCAAGCAGAAATGCAGGAGAAA
TGCTTGATCGCCTCACTCTTACTTATAACAGAACTCGTCAAGCATCTATC
ACCACCGAGTTGATTGAGATTATATCTGGAGCATCAGCACTGGAAGGCTG
ATTACAAAAGCGACAGTGCTCACTTTTCTTGACAGTGACGAAATAAATCC
TTGGTGGAGGCTTTGTTCAAACTTCAATGTGGTACTTTCATAAGAGTTTT
TGTTGAGCTACTCCAATAATCTCTCCAGTGTTAAAACTTGGGGAATTAAC
AATTATACTTGCGATATTTTCAATATAGTTTTTGATTCTCAAAAAATAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA
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