FC872689

Overview
NameFC872689
Unique NameFC872689
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length827
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_GLUDA (ATP synthase gamma chain OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=atpG PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.962e-23
Identity = 60/135 (44.44%), Postives = 89/135 (65.93%), Query Frame = 2
Query:  188 ILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            +L+  EFD   ++Y++F++V+S  PT   ++   +   +  + G   E  SYE E GE   ++L +L        ++  +LE+A  EQGARM+AMD+++RNAG+ +DRLTLTYNRTRQ +IT ELIEIISGA A+
Sbjct:  164 MLEKGEFDVCTVVYNRFNNVMSQTPTEMQLIPLAVPANDTVASG---ERASYEFEPGEE--QLLSSLLPRNLQVQLYATMLESAAGEQGARMTAMDNATRNAGKAIDRLTLTYNRTRQTNITNELIEIISGAQAV 293          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_BRAJA (ATP synthase gamma chain OS=Bradyrhizobium japonicum GN=atpG PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.962e-23
Identity = 75/185 (40.54%), Postives = 99/185 (53.51%), Query Frame = 2
Query:   47 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            KE K+  +G K    L R   K I   +       L +     +A  +L   E   FD   + YS+F SV++ +PT   ++ P +VE      G      SYE E  E   EIL  L     +  +F A+LEN  S  GA+MSAMD+++RNAGEM+ + TL YNRTRQA IT ELIEIISGA A+
Sbjct:  114 KEVKFFCVGRKGYEQLRRQFDKQIVEHLDLRSVRQLGFVNAEDIAKKVLARFEAGEFDVCTLFYSRFRSVIAQIPTAQQII-PLVVEE-----GTAASTTSYEYEPEED--EILTRLLPRNLAVQIFRALLENNASFYGAQMSAMDNATRNAGEMIRKQTLVYNRTRQAQITKELIEIISGAEAV 290          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_RHORU (ATP synthase gamma chain OS=Rhodospirillum rubrum GN=atpG PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.347e-23
Identity = 71/188 (37.77%), Postives = 106/188 (56.38%), Query Frame = 2
Query:   47 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQV---SVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLS---PELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            K  K + +G+K +  L R+  K I   I +     + ++     S L  D+ +  EFD   ++Y++F S +S + T   ++    P  V    ++    G    YE E  E   EIL +L     +  +F  +LE+  SEQGARM+AMD+++RNAG+M+ +L+LTYNRTRQA IT ELIEIISGA A+
Sbjct:  114 KTVKLLCIGKKGRDGLKREFPKQIIGGIADQSSKAIGFSDADRFSRLILDMFQAGEFDVCTLVYNRFQSAISQVVTRQQIIPFAVPTTVAAGNDNDRTAGPKAIYEYEPSEE--EILADLLPKNVAIQVFRGMLESFASEQGARMTAMDNATRNAGDMIKKLSLTYNRTRQAQITKELIEIISGAEAI 299          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_RHORT (ATP synthase gamma chain OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=atpG PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.347e-23
Identity = 71/188 (37.77%), Postives = 106/188 (56.38%), Query Frame = 2
Query:   47 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQV---SVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLS---PELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            K  K + +G+K +  L R+  K I   I +     + ++     S L  D+ +  EFD   ++Y++F S +S + T   ++    P  V    ++    G    YE E  E   EIL +L     +  +F  +LE+  SEQGARM+AMD+++RNAG+M+ +L+LTYNRTRQA IT ELIEIISGA A+
Sbjct:  114 KTVKLLCIGKKGRDGLKREFPKQIIGGIADQSSKAIGFSDADRFSRLILDMFQAGEFDVCTLVYNRFQSAISQVVTRQQIIPFAVPTTVAAGNDNDRTAGPKAIYEYEPSEE--EILADLLPKNVAIQVFRGMLESFASEQGARMTAMDNATRNAGDMIKKLSLTYNRTRQAQITKELIEIISGAEAI 299          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_RHOBL (ATP synthase gamma chain OS=Rhodopseudomonas blastica GN=atpG PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.347e-23
Identity = 72/185 (38.92%), Postives = 104/185 (56.22%), Query Frame = 2
Query:   47 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVEF---DALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            K  K + +G+K +  L RD        +       L Y+    +A ++L   E    D + I Y++F SV+S +PT   V+  +    E  +         Y+ E  E    IL +L     +  +F A+LENA SEQGARMSAMD+++RNAG+M+++LT+ YNR+RQA+IT ELIEIISGA AL
Sbjct:  112 KTVKILTVGKKGREQLKRDWASAFVGHVDLSDVRRLGYSNAQGIAREVLAAFEAGEADVVTIFYNRFQSVISQVPTAQQVIPAKFEAAETNA--------LYDYEPSEEA--ILADLLPRGVATQIFTALLENAASEQGARMSAMDNATRNAGDMINKLTIQYNRSRQAAITKELIEIISGAEAL 286          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_BRUSU (ATP synthase gamma chain OS=Brucella suis GN=atpG PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.347e-23
Identity = 72/185 (38.92%), Postives = 101/185 (54.59%), Query Frame = 2
Query:   47 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            K  K + +G+K   IL R+    +   +   +   L +     +   I+K  E   FD   + YS+F SV+S +PT A  L P   + EAE       +  YE +       IL  L     S  +F A+LEN   E GA+MSAMD+++RNAG+M+++L++TYNR RQA IT ELIEIISGA AL
Sbjct:  113 KTVKIITVGKKGADILRREFSALLHDHVDLREVKQLAFVHADQIGHKIIKLFEEGAFDVCTLFYSEFKSVISQVPT-AQQLIPASADNEAEMETAGDAIYEYEPD----PAAILSTLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGDMINKLSITYNRQRQAQITKELIEIISGAEAL 292          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_BRUSI (ATP synthase gamma chain OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=atpG PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.347e-23
Identity = 72/185 (38.92%), Postives = 101/185 (54.59%), Query Frame = 2
Query:   47 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            K  K + +G+K   IL R+    +   +   +   L +     +   I+K  E   FD   + YS+F SV+S +PT A  L P   + EAE       +  YE +       IL  L     S  +F A+LEN   E GA+MSAMD+++RNAG+M+++L++TYNR RQA IT ELIEIISGA AL
Sbjct:  113 KTVKIITVGKKGADILRREFSALLHDHVDLREVKQLAFVHADQIGHKIIKLFEEGAFDVCTLFYSEFKSVISQVPT-AQQLIPASADNEAEMETAGDAIYEYEPD----PAAILSTLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGDMINKLSITYNRQRQAQITKELIEIISGAEAL 292          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_BRUO2 (ATP synthase gamma chain OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=atpG PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.347e-23
Identity = 72/185 (38.92%), Postives = 101/185 (54.59%), Query Frame = 2
Query:   47 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            K  K + +G+K   IL R+    +   +   +   L +     +   I+K  E   FD   + YS+F SV+S +PT A  L P   + EAE       +  YE +       IL  L     S  +F A+LEN   E GA+MSAMD+++RNAG+M+++L++TYNR RQA IT ELIEIISGA AL
Sbjct:  113 KTVKIITVGKKGADILRREFSALLHDHVDLREVKQLAFVHADQIGHKIIKLFEEGAFDVCTLFYSEFKSVISQVPT-AQQLIPASADNEAEMETAGDAIYEYEPD----PAAILSTLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGDMINKLSITYNRQRQAQITKELIEIISGAEAL 292          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_BRUC2 (ATP synthase gamma chain OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=atpG PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.347e-23
Identity = 72/185 (38.92%), Postives = 101/185 (54.59%), Query Frame = 2
Query:   47 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            K  K + +G+K   IL R+    +   +   +   L +     +   I+K  E   FD   + YS+F SV+S +PT A  L P   + EAE       +  YE +       IL  L     S  +F A+LEN   E GA+MSAMD+++RNAG+M+++L++TYNR RQA IT ELIEIISGA AL
Sbjct:  113 KTVKIITVGKKGADILRREFSALLHDHVDLREVKQLAFVHADQIGHKIIKLFEEGAFDVCTLFYSEFKSVISQVPT-AQQLIPASADNEAEMETAGDAIYEYEPD----PAAILSTLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGDMINKLSITYNRQRQAQITKELIEIISGAEAL 292          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_RHOPS (ATP synthase gamma chain OS=Rhodopseudomonas palustris (strain BisB5) GN=atpG PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.371e-23
Identity = 78/191 (40.84%), Postives = 104/191 (54.45%), Query Frame = 2
Query:   29 LNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDIL---KNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            +N G  K  K+  +G K    L R   K I   I       L +     +A  ++    N EFD   + YS+F SV+S +PT A  L P +VE  A + G +     YE E    + EIL  L     +  +F A+LEN  S  GA+MSAMD+++RNAG+M+ + TL YNRTRQA IT ELIEIISGA A+
Sbjct:  110 MNQG--KTVKFFCVGRKGYEQLRRTFDKQIIENIELRSVRQLGFVNAEDIAQKVIARFNNGEFDVCTLFYSRFKSVISQIPT-AQQLIPLVVE--APAAGSVATSYEYEPE----EDEILSTLLPRNLAVQIFRALLENNASFYGAQMSAMDNATRNAGDMIRKQTLIYNRTRQAMITKELIEIISGAEAI 291          
The following BLAST results are available for this feature:
BLAST of FC872689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_GLUDA1.962e-2344.44ATP synthase gamma chain OS=Gluconacetobacter diaz... [more]
ATPG_BRAJA1.962e-2340.54ATP synthase gamma chain OS=Bradyrhizobium japonic... [more]
ATPG_RHORU3.347e-2337.77ATP synthase gamma chain OS=Rhodospirillum rubrum ... [more]
ATPG_RHORT3.347e-2337.77ATP synthase gamma chain OS=Rhodospirillum rubrum ... [more]
ATPG_RHOBL3.347e-2338.92ATP synthase gamma chain OS=Rhodopseudomonas blast... [more]
ATPG_BRUSU3.347e-2338.92ATP synthase gamma chain OS=Brucella suis GN=atpG ... [more]
ATPG_BRUSI3.347e-2338.92ATP synthase gamma chain OS=Brucella suis (strain ... [more]
ATPG_BRUO23.347e-2338.92ATP synthase gamma chain OS=Brucella ovis (strain ... [more]
ATPG_BRUC23.347e-2338.92ATP synthase gamma chain OS=Brucella canis (strain... [more]
ATPG_RHOPS4.371e-2340.84ATP synthase gamma chain OS=Rhodopseudomonas palus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DB03ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1DB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872689 ID=FC872689; Name=FC872689; organism=Citrus clementina; type=EST; length=827bp
GGGTAAGATAAGCAAGAGTTTGCACAAGTTGAATTCTGGTCCCGACAAAG
AAAACAAATACGTCATCTTGGGAGAGAAGGCAAAGGCAATATTAGTACGT
GACTCAAAGAAAGATATTGAACTCATCATAACTGAGTTACAGAAAAATCC
TCTCAATTATACCCAGGTTTCCGTTCTTGCAGATGATATCTTAAAGAATG
TAGAATTTGATGCTTTGAGGATTATCTATAGCAAGTTCCATTCCGTGGTC
TCCTTTCTGCCGACAATGGCAACTGTATTATCGCCTGAGCTTGTGGAGAG
AGAAGCCGAATCTGGGGGAAAGCTTGGTGAGCTAGACTCCTATGAAATTG
AAGGCGGTGAAACAAAGGGTGAAATACTTCAAAATCTGGCTGAGTTCCAA
TTCTCTTGTGTCATGTTCAATGCGGTGTTGGAGAATGCCTGCAGTGAGCA
AGGGGCAAGGATGTCTGCCATGGATAGCTCAAGCAGAAATGCAGGAGAAA
TGCTTGATCGCCTCACTCTTACTTATAACAGAACTCGTCAAGCATCTATC
ACCACCGAGTTGATTGAGATTATATCTGGAGCATCAGCACTGGAAGGCTG
ATTACAAAAGCGACAGTGCTCACTTTTCTTGACAGTGACGAAATAAATCC
TTGGTGGAGGCTTTGTTCAAACTTCAATGTGGTACTTTCATAAGAGTTTT
TGTTGAGCTACTCCAATAATCTCTCCAGTGTTAAAACTTGGGGAATTAAC
AATTATACTTGCGATATTTTCAATATAGTTTTTGATTCTCAAAAAATAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA
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