FC872689

Overview
NameFC872689
Unique NameFC872689
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length827
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_STRA3 (ATP synthase gamma chain OS=Streptococcus agalactiae serotype III GN=atpG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.838e-11
Identity = 43/139 (30.94%), Postives = 77/139 (55.40%), Query Frame = 2
Query:  179 ADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 595
            A ++ KN  FD L + Y+  H V S    +       + E +A+   +   +  +E+E    +  IL+ L       +++ A+++   +E  A M+AM +++ NA  +++ LT+ YNR RQA+IT E+ EI++GA+ALE
Sbjct:  159 AVEMYKNELFDELYVCYN--HHVNSLTSQVRMQQMLPIKELDADEASEDRVITGFELE--PNREVILEQLLPQYTESLIYGAIIDAKTAEHAAGMTAMQTATDNAKNVINDLTIQYNRARQAAITQEITEIVAGANALE 293          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_PSEFS (ATP synthase gamma chain OS=Pseudomonas fluorescens (strain SBW25) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.838e-11
Identity = 55/179 (30.73%), Postives = 95/179 (53.07%), Query Frame = 2
Query:   65 ILGEKAKAILVRDSKKDIELIITELQKNP-LN--YTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            ++G K  A   R+   ++   I+ L + P +N     V V+ D  L+    D L ++ +KF + ++  PT+  ++ P +   + E       L  YE +  E    ++    E Q    ++ AV+EN  +EQ ARM AM +++ NAG+++  L L YN+ RQA+IT E+ EI+ GA+A+
Sbjct:  117 VVGSKGAAFF-RNFGGNVVAAISHLGEEPSINDLIGSVKVMLDAYLEG-RIDRLSVVSNKFINTMTQQPTVEQLI-PLVATPDQELKHHWDYL--YEPDAKELLDGLMVRYVESQ----VYQAVVENNAAEQAARMIAMKNATDNAGDLISDLQLIYNKARQAAITQEISEIVGGAAAV 286          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_PSEAE (ATP synthase gamma chain OS=Pseudomonas aeruginosa GN=atpG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.838e-11
Identity = 62/199 (31.16%), Postives = 102/199 (51.26%), Query Frame = 2
Query:   14 KSLHKLNSGPDKENKYV---ILGEKAKAILVRDSKKDIELIITELQKNP-LN--YTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            KSL K  SG  ++   +   ++G K  A   R    ++   I+ L + P +N     V V+ D  L+    D L ++ +KF + ++  PT+  ++ P + + + E       L  YE +       +L    E Q    ++ AV+EN   EQ ARM AM +++ NAGE++  L L YN+ RQA+IT E+ EI+ GA+A+
Sbjct:   97 KSLVKDMSGYREQGAEIDLCVIGSKG-ASFFRSFGGNVVAAISHLGEEPSINDLIGSVKVMLDAYLEG-RIDRLFVVSNKFVNTMTQKPTVEQLI-PLVADDDQELKHHWDYL--YEPDAKSLLDGLLVRYVESQ----VYQAVVENNACEQAARMIAMKNATDNAGELISDLQLIYNKARQAAITQEISEIVGGAAAV 286          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_PSEAB (ATP synthase gamma chain OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.838e-11
Identity = 62/199 (31.16%), Postives = 102/199 (51.26%), Query Frame = 2
Query:   14 KSLHKLNSGPDKENKYV---ILGEKAKAILVRDSKKDIELIITELQKNP-LN--YTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            KSL K  SG  ++   +   ++G K  A   R    ++   I+ L + P +N     V V+ D  L+    D L ++ +KF + ++  PT+  ++ P + + + E       L  YE +       +L    E Q    ++ AV+EN   EQ ARM AM +++ NAGE++  L L YN+ RQA+IT E+ EI+ GA+A+
Sbjct:   97 KSLVKDMSGYREQGAEIDLCVIGSKG-ASFFRSFGGNVVAAISHLGEEPSINDLIGSVKVMLDAYLEG-RIDRLFVVSNKFVNTMTQKPTVEQLI-PLVADDDQELKHHWDYL--YEPDAKSLLDGLLVRYVESQ----VYQAVVENNACEQAARMIAMKNATDNAGELISDLQLIYNKARQAAITQEISEIVGGAAAV 286          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_PSEA8 (ATP synthase gamma chain OS=Pseudomonas aeruginosa (strain LESB58) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.838e-11
Identity = 62/199 (31.16%), Postives = 102/199 (51.26%), Query Frame = 2
Query:   14 KSLHKLNSGPDKENKYV---ILGEKAKAILVRDSKKDIELIITELQKNP-LN--YTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            KSL K  SG  ++   +   ++G K  A   R    ++   I+ L + P +N     V V+ D  L+    D L ++ +KF + ++  PT+  ++ P + + + E       L  YE +       +L    E Q    ++ AV+EN   EQ ARM AM +++ NAGE++  L L YN+ RQA+IT E+ EI+ GA+A+
Sbjct:   97 KSLVKDMSGYREQGAEIDLCVIGSKG-ASFFRSFGGNVVAAISHLGEEPSINDLIGSVKVMLDAYLEG-RIDRLFVVSNKFVNTMTQKPTVEQLI-PLVADDDQELKHHWDYL--YEPDAKSLLDGLLVRYVESQ----VYQAVVENNACEQAARMIAMKNATDNAGELISDLQLIYNKARQAAITQEISEIVGGAAAV 286          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_PSEA7 (ATP synthase gamma chain OS=Pseudomonas aeruginosa (strain PA7) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.838e-11
Identity = 62/199 (31.16%), Postives = 102/199 (51.26%), Query Frame = 2
Query:   14 KSLHKLNSGPDKENKYV---ILGEKAKAILVRDSKKDIELIITELQKNP-LN--YTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            KSL K  SG  ++   +   ++G K  A   R    ++   I+ L + P +N     V V+ D  L+    D L ++ +KF + ++  PT+  ++ P + + + E       L  YE +       +L    E Q    ++ AV+EN   EQ ARM AM +++ NAGE++  L L YN+ RQA+IT E+ EI+ GA+A+
Sbjct:   97 KSLVKDMSGYREQGAEIDLCVIGSKG-ASFFRSFGGNVVAAISHLGEEPSINDLIGSVKVMLDAYLEG-RIDRLFVVSNKFVNTMTQKPTVEQLI-PLVADDDQELKHHWDYL--YEPDAKSLLDGLLVRYVESQ----VYQAVVENNACEQAARMIAMKNATDNAGELISDLQLIYNKARQAAITQEISEIVGGAAAV 286          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_PROMM (ATP synthase gamma chain OS=Prochlorococcus marinus (strain MIT 9313) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.838e-11
Identity = 55/197 (27.92%), Postives = 97/197 (49.24%), Query Frame = 2
Query:   62 VILGEKAKAILV-RDSKKDIELIITELQKNPLNYTQVSVLADDILK--NVEFDALRIIYSKFHSVVSFLPTMATVL--SPELVEREAESGGKLGELDS-YEIEGG-----------------ETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGA 583
            V++G KA      R S+  I    T L++ P +    S+  + + +  +   D + +IY+KF ++VS  P + T+L   P+ +    +   +L   DS   +E G                 ++  ++L  L        M  A+ E+A SE  +RM+AM+++S NA  +   LTL YN+ RQA+IT E++E++ G+
Sbjct:  118 VLIGRKAITYFSNRSSQYTIRATFTGLEQVPTSDDAESITTEVLAEFLSQSTDRIEVIYTKFINLVSCNPVVQTLLPLDPQGIAEADDEIFRLTTKDSRLTVEKGVGPANEQPPLPSDIIFEQSPEQLLNALLPLYLQNQMLRALQESAASELASRMTAMNNASDNAKALAKTLTLDYNKARQAAITQEILEVVGGS 314          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_PROM3 (ATP synthase gamma chain OS=Prochlorococcus marinus (strain MIT 9303) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.838e-11
Identity = 55/197 (27.92%), Postives = 97/197 (49.24%), Query Frame = 2
Query:   62 VILGEKAKAILV-RDSKKDIELIITELQKNPLNYTQVSVLADDILK--NVEFDALRIIYSKFHSVVSFLPTMATVL--SPELVEREAESGGKLGELDS-YEIEGG-----------------ETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGA 583
            V++G KA      R S+  I    T L++ P +    S+  + + +  +   D + +IY+KF ++VS  P + T+L   P+ +    +   +L   DS   +E G                 ++  ++L  L        M  A+ E+A SE  +RM+AM+++S NA  +   LTL YN+ RQA+IT E++E++ G+
Sbjct:  118 VLIGRKAITYFSNRSSQYTIRATFTGLEQVPTSDDAESITTEVLAEFLSQSTDRIEVIYTKFINLVSCNPVVQTLLPLDPQGIAEADDEIFRLTTKDSRLTVEKGVGPANEQPPLPSDIIFEQSPEQLLNALLPLYLQNQMLRALQESAASELASRMTAMNNASDNAKALAKTLTLDYNKARQAAITQEILEVVGGS 314          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_POLSJ (ATP synthase gamma chain OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.838e-11
Identity = 45/136 (33.09%), Postives = 74/136 (54.41%), Query Frame = 2
Query:  185 DILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            D     + +A+ + Y+KF + +   P +  +L       +A+   + G    YE +      ++L    E     +++ AV EN  SEQ ARM AM +++ NAG ++  L L YN+TRQA+IT EL EI++GA+A+
Sbjct:  158 DAYSEGKINAVYLCYTKFINTMRQEPVVEQLLPLTAAHLQADKD-QHGWDYIYEPDAQTVIDDLLLRYVE----ALIYQAVAENMASEQSARMVAMKAATDNAGSVIGELKLIYNKTRQAAITKELSEIVAGAAAV 288          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_METFK (ATP synthase gamma chain OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=atpG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.838e-11
Identity = 59/200 (29.50%), Postives = 95/200 (47.50%), Query Frame = 2
Query:    5 KISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNP---LNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDS-YEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            ++S +  K   G  K+     +G K    L R +  D++  +T L   P        + V+ D  +   E D L I Y++F + +     +  VL     + E  +    G  D  YE +      E++    E     ++++AV EN  SEQ ARM AM ++S NA  ++  L L YN+ RQA+IT E+ EI+ GA+A+
Sbjct:   98 RLSINQMKAWEGEGKKTIVSAIGNKGFTYLNRINA-DVKSHVTGLGDTPHLEKLIGTIKVMLDAYIAG-EIDQLHICYTRFLNTMKQEAVIEQVLPLSDDKLETSATTAKGHWDYIYEPDANVVIDELMTRYIE----TIIYHAVTENMASEQSARMVAMKAASDNAKNVIGELKLVYNKARQAAITKEISEIVGGAAAV 291          
The following BLAST results are available for this feature:
BLAST of FC872689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_STRA33.838e-1130.94ATP synthase gamma chain OS=Streptococcus agalacti... [more]
ATPG_PSEFS3.838e-1130.73ATP synthase gamma chain OS=Pseudomonas fluorescen... [more]
ATPG_PSEAE3.838e-1131.16ATP synthase gamma chain OS=Pseudomonas aeruginosa... [more]
ATPG_PSEAB3.838e-1131.16ATP synthase gamma chain OS=Pseudomonas aeruginosa... [more]
ATPG_PSEA83.838e-1131.16ATP synthase gamma chain OS=Pseudomonas aeruginosa... [more]
ATPG_PSEA73.838e-1131.16ATP synthase gamma chain OS=Pseudomonas aeruginosa... [more]
ATPG_PROMM3.838e-1127.92ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_PROM33.838e-1127.92ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_POLSJ3.838e-1133.09ATP synthase gamma chain OS=Polaromonas sp. (strai... [more]
ATPG_METFK3.838e-1129.50ATP synthase gamma chain OS=Methylobacillus flagel... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DB03ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1DB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872689 ID=FC872689; Name=FC872689; organism=Citrus clementina; type=EST; length=827bp
GGGTAAGATAAGCAAGAGTTTGCACAAGTTGAATTCTGGTCCCGACAAAG
AAAACAAATACGTCATCTTGGGAGAGAAGGCAAAGGCAATATTAGTACGT
GACTCAAAGAAAGATATTGAACTCATCATAACTGAGTTACAGAAAAATCC
TCTCAATTATACCCAGGTTTCCGTTCTTGCAGATGATATCTTAAAGAATG
TAGAATTTGATGCTTTGAGGATTATCTATAGCAAGTTCCATTCCGTGGTC
TCCTTTCTGCCGACAATGGCAACTGTATTATCGCCTGAGCTTGTGGAGAG
AGAAGCCGAATCTGGGGGAAAGCTTGGTGAGCTAGACTCCTATGAAATTG
AAGGCGGTGAAACAAAGGGTGAAATACTTCAAAATCTGGCTGAGTTCCAA
TTCTCTTGTGTCATGTTCAATGCGGTGTTGGAGAATGCCTGCAGTGAGCA
AGGGGCAAGGATGTCTGCCATGGATAGCTCAAGCAGAAATGCAGGAGAAA
TGCTTGATCGCCTCACTCTTACTTATAACAGAACTCGTCAAGCATCTATC
ACCACCGAGTTGATTGAGATTATATCTGGAGCATCAGCACTGGAAGGCTG
ATTACAAAAGCGACAGTGCTCACTTTTCTTGACAGTGACGAAATAAATCC
TTGGTGGAGGCTTTGTTCAAACTTCAATGTGGTACTTTCATAAGAGTTTT
TGTTGAGCTACTCCAATAATCTCTCCAGTGTTAAAACTTGGGGAATTAAC
AATTATACTTGCGATATTTTCAATATAGTTTTTGATTCTCAAAAAATAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA
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