FC872689

Overview
NameFC872689
Unique NameFC872689
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length827
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_RHOP5 (ATP synthase gamma chain OS=Rhodopseudomonas palustris (strain BisA53) GN=atpG PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.371e-23
Identity = 77/191 (40.31%), Postives = 104/191 (54.45%), Query Frame = 2
Query:   29 LNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            +N G  KE K   +G K    L R+  + I   I       L +     +A  ++      EFD   + YS+F SV+S +PT   ++ P +VE  A   G      SYE E  E   EIL +L     +  +F A+LEN  S  GA+MSAMD+++RNAG+M+ + TL YNRTRQA IT ELIEIISGA A+
Sbjct:  110 MNQG--KEVKIFCVGRKGYEQLRRNFDRQIVENIELRSVRQLGFVNAEDIAAKVIARFDAGEFDVCTLFYSRFKSVISQIPTAQQII-PLVVEAPAAGAGPA---PSYEYEPEED--EILASLLPRNLAVQIFRALLENNASFYGAQMSAMDNATRNAGDMIRKQTLIYNRTRQAMITKELIEIISGAEAI 292          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_RHOP2 (ATP synthase gamma chain OS=Rhodopseudomonas palustris (strain HaA2) GN=atpG PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.371e-23
Identity = 82/195 (42.05%), Postives = 107/195 (54.87%), Query Frame = 2
Query:   29 LNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV-------EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            +N G  KE K+  +G K    L R   K I   +       L +    V A+DI K V       EFD   + YS+F SV+S +PT A  L P +VE  A + G +     YE E    + EIL  L     +  +F A+LEN  S  GA+MSAMD+++RNAG+M+ + TL YNRTRQA IT ELIEIISGA A+
Sbjct:  110 MNQG--KEVKFFCVGRKGYEQLRRTFDKQIIENLELRSVRQLGF----VNAEDIAKKVIARFNAGEFDVCTLFYSRFKSVISQIPT-AQQLIPLVVE--APAAGSVATSYEYEPE----EDEILSTLLPRNLAVQIFRALLENNASFYGAQMSAMDNATRNAGDMIRKQTLIYNRTRQAMITKELIEIISGAEAI 291          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_ERYLH (ATP synthase gamma chain OS=Erythrobacter litoralis (strain HTCC2594) GN=atpG PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.709e-23
Identity = 73/200 (36.50%), Postives = 113/200 (56.50%), Query Frame = 2
Query:    5 KISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDI-ELIITELQKNPLNYTQVSVLAD---DILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            K +K+  K      K+ ++ ++G+K +A + RD +K I +   T   K P  + +   +A+   D+ +  EFD   ++Y  F S +   PT   ++     E E   G  +      E E GE   EIL+ L        +F A+LE   SEQGA M+AMD+++RNAG+++++LT+ YNR+RQA+ITTELIEII+GA AL
Sbjct:   99 KEAKAQAKKLIAAGKDVQFYLVGKKGRAPIKRDYEKQIAKHFDTSTVKQP-GFEEADAIANELIDMFEAGEFDVAHLVYPTFKSALVQDPTTNQLIPVPSPEGEGTGGDAV-----VEYEPGEE--EILEELLPRYVKTQLFGALLEREASEQGASMTAMDNATRNAGDLINKLTIQYNRSRQAAITTELIEIIAGAEAL 290          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_BRASB (ATP synthase gamma chain OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=atpG PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.709e-23
Identity = 79/200 (39.50%), Postives = 110/200 (55.00%), Query Frame = 2
Query:   14 KSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV-------EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            ++L  +N G  K+ K+  +G K    L R  +K I   +       + +    V A+DI K V       EFD   + YS+F SV++ +PT   ++ P +VE  A +   +  L  YE E    + EIL  L        +F A+LEN  S  GA+MSAMD+++RNAGEM+ + TL YNRTRQA IT ELIEIISGA A+
Sbjct:  105 RALALMNQG--KDVKFFCVGRKGYEQLRRQFEKQIIAHVDLRSVRQIGF----VHAEDIAKQVIARFDAGEFDVCTLFYSRFKSVIAQIPTAQQII-PLVVEAPAANAAPVA-LYEYEPE----EDEILSALLPRNVGVQIFRALLENNASFYGAQMSAMDNATRNAGEMIRKQTLVYNRTRQAQITKELIEIISGAEAV 292          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_RHOCA (ATP synthase gamma chain OS=Rhodobacter capsulatus GN=atpG PE=1 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 7.456e-23
Identity = 77/197 (39.09%), Postives = 111/197 (56.35%), Query Frame = 2
Query:   11 SKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            +K++  L  G  K  K + +G+K +  L RD  +     I       L+Y     ++ +I+   E   +D   I +S F SV+S +PT   V+ P   E +A S   +     Y+ E G+   EIL  L     +  +F A+LEN  S  GA+MSAMD+++RNAG+M+DRLT+ YNR+RQA+IT ELIEIISGA AL
Sbjct:  104 AKAMELLAQG--KTVKILTVGKKGRDALRRDLGQYYIDHIDLSDVKKLSYPVAQKISQNIIDRFEAGEYDVATIFFSVFQSVISQVPTAKQVI-PAQFETDAASASAV-----YDYEPGDQ--EILTALLPRAVATAIFAALLENNASFNGAQMSAMDNATRNAGDMIDRLTIEYNRSRQAAITKELIEIISGAEAL 290          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_GRABC (ATP synthase gamma chain OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=atpG PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.456e-23
Identity = 71/202 (35.15%), Postives = 108/202 (53.47%), Query Frame = 2
Query:    2 GKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKL--GELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            G+ +++L        K  K + +G KA+  L RD +  +    +   K  L +     L+  I   +   EFD   ++Y+ F+SV+S  P    ++  ++ +      G    G    YE E  E    +L  L     +  ++ A+LE+A  E  ARM+AMD+++RNAG+M+ RL+LTYNRTRQA+IT ELIEIISGA AL
Sbjct:   99 GRAARTLANRLESEGKTVKILTVGRKARDYLRRDLETRLLPETSLAGKKVLAFADALALSQQITARLDAGEFDVCTLVYNHFNSVISQTPGETQLIPAQVPQAAPADAGASSNGAKAVYEFEPDEET--LLAKLLPQNLAIQIYRAILESAAGEHAARMTAMDNATRNAGDMIKRLSLTYNRTRQANITRELIEIISGAEAL 298          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_BRASO (ATP synthase gamma chain OS=Bradyrhizobium sp. (strain ORS278) GN=atpG PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.456e-23
Identity = 79/200 (39.50%), Postives = 110/200 (55.00%), Query Frame = 2
Query:   14 KSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV-------EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            ++L  +N G  K+ K+  +G K    L R  +K I   +       + +    V A+DI K V       EFD   + YS+F SV++ +PT   ++ P +VE  A +   +  L  YE E    + EIL  L        +F A+LEN  S  GA+MSAMD+++RNAGEM+ + TL YNRTRQA IT ELIEIISGA A+
Sbjct:  105 RALALMNQG--KDVKFFCVGRKGYEQLRRQFEKQIIAHVDLRSVRQIGF----VHAEDIAKQVIARFDAGEFDVCTLFYSRFKSVIAQIPTAQQII-PLVVEAPAANAAPVA-LYEYEPE----EDEILSALLPRNVGVQIFRALLENNASFYGAQMSAMDNATRNAGEMIRKQTLVYNRTRQAMITKELIEIISGAEAV 292          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_AGRVS (ATP synthase gamma chain OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=atpG PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.456e-23
Identity = 62/130 (47.69%), Postives = 82/130 (63.08%), Query Frame = 2
Query:  203 EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            EFD   + YS+F SV+S +PT A  L P  V     +      +  YE +       IL +L     +  +F A+LENA  E GA+MSAMD+++RNAGEM+++LTL+YNR RQA ITTELIEII+GA AL
Sbjct:  169 EFDVCTLFYSEFKSVISQIPT-ARQLIPAAVGDAPAASSSAAAIYDYEPDAAS----ILSDLIPRNIAVQIFRALLENAAGEMGAKMSAMDNATRNAGEMINKLTLSYNRQRQAKITTELIEIIAGAEAL 293          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_AGRRK (ATP synthase gamma chain OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=atpG PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.456e-23
Identity = 71/185 (38.38%), Postives = 106/185 (57.30%), Query Frame = 2
Query:   47 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVL---SPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            K+   ++  E A  I+ R   +D++ +  E      N   +     ++ +  EFD   + YS+F SV+S +PT   ++   +P +VE +A   G + E   YE +       IL +L     S  +F A+LEN   E G++MSAMD+++RNAGEM+++LTL+YNR RQA IT ELIEIISGA AL
Sbjct:  123 KKGYDILRREYASLIIERKELRDVKRVGFE------NADALGKRIIEMFEAGEFDVCTLFYSEFKSVISQVPTGLQLIPASAPAVVEEDAAHKGAVYE---YEPDAAS----ILADLIPRNISVQIFRALLENVAGEMGSKMSAMDNATRNAGEMINKLTLSYNRQRQAQITKELIEIISGAEAL 294          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_NITHX (ATP synthase gamma chain OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=atpG PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.738e-23
Identity = 73/196 (37.24%), Postives = 105/196 (53.57%), Query Frame = 2
Query:   14 KSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            ++L  +N G  K+ K+  +G K    L R  +K I   +       L +     +A  ++      EFD   + YS+F SV++ +PT   ++  E+    A +G        YE E  E   EIL  L     +  +F A+LEN  S  GA+MSAMD+++RNAG+M+ + TL YNRTRQA IT ELIEIISGA A+
Sbjct:  105 RALALMNQG--KDVKFFCVGRKGYEQLRRTFEKQIVENVELRSVRQLGFVNAEAIAKKVIARFNAGEFDVCTLFYSRFKSVIAQVPTAQQIIPLEVEAPAANAG----PAPFYEYEPEED--EILTRLLPRNLAVQIFRALLENNASFYGAQMSAMDNATRNAGDMIRKQTLVYNRTRQAMITKELIEIISGAEAI 292          
The following BLAST results are available for this feature:
BLAST of FC872689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_RHOP54.371e-2340.31ATP synthase gamma chain OS=Rhodopseudomonas palus... [more]
ATPG_RHOP24.371e-2342.05ATP synthase gamma chain OS=Rhodopseudomonas palus... [more]
ATPG_ERYLH5.709e-2336.50ATP synthase gamma chain OS=Erythrobacter litorali... [more]
ATPG_BRASB5.709e-2339.50ATP synthase gamma chain OS=Bradyrhizobium sp. (st... [more]
ATPG_RHOCA7.456e-2339.09ATP synthase gamma chain OS=Rhodobacter capsulatus... [more]
ATPG_GRABC7.456e-2335.15ATP synthase gamma chain OS=Granulibacter bethesde... [more]
ATPG_BRASO7.456e-2339.50ATP synthase gamma chain OS=Bradyrhizobium sp. (st... [more]
ATPG_AGRVS7.456e-2347.69ATP synthase gamma chain OS=Agrobacterium vitis (s... [more]
ATPG_AGRRK7.456e-2338.38ATP synthase gamma chain OS=Agrobacterium radiobac... [more]
ATPG_NITHX9.738e-2337.24ATP synthase gamma chain OS=Nitrobacter hamburgens... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB1DB03ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1DB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872689 ID=FC872689; Name=FC872689; organism=Citrus clementina; type=EST; length=827bp
GGGTAAGATAAGCAAGAGTTTGCACAAGTTGAATTCTGGTCCCGACAAAG
AAAACAAATACGTCATCTTGGGAGAGAAGGCAAAGGCAATATTAGTACGT
GACTCAAAGAAAGATATTGAACTCATCATAACTGAGTTACAGAAAAATCC
TCTCAATTATACCCAGGTTTCCGTTCTTGCAGATGATATCTTAAAGAATG
TAGAATTTGATGCTTTGAGGATTATCTATAGCAAGTTCCATTCCGTGGTC
TCCTTTCTGCCGACAATGGCAACTGTATTATCGCCTGAGCTTGTGGAGAG
AGAAGCCGAATCTGGGGGAAAGCTTGGTGAGCTAGACTCCTATGAAATTG
AAGGCGGTGAAACAAAGGGTGAAATACTTCAAAATCTGGCTGAGTTCCAA
TTCTCTTGTGTCATGTTCAATGCGGTGTTGGAGAATGCCTGCAGTGAGCA
AGGGGCAAGGATGTCTGCCATGGATAGCTCAAGCAGAAATGCAGGAGAAA
TGCTTGATCGCCTCACTCTTACTTATAACAGAACTCGTCAAGCATCTATC
ACCACCGAGTTGATTGAGATTATATCTGGAGCATCAGCACTGGAAGGCTG
ATTACAAAAGCGACAGTGCTCACTTTTCTTGACAGTGACGAAATAAATCC
TTGGTGGAGGCTTTGTTCAAACTTCAATGTGGTACTTTCATAAGAGTTTT
TGTTGAGCTACTCCAATAATCTCTCCAGTGTTAAAACTTGGGGAATTAAC
AATTATACTTGCGATATTTTCAATATAGTTTTTGATTCTCAAAAAATAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top