FC872689
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_RHOP5 (ATP synthase gamma chain OS=Rhodopseudomonas palustris (strain BisA53) GN=atpG PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 4.371e-23 Identity = 77/191 (40.31%), Postives = 104/191 (54.45%), Query Frame = 2 Query: 29 LNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592 +N G KE K +G K L R+ + I I L + +A ++ EFD + YS+F SV+S +PT ++ P +VE A G SYE E E EIL +L + +F A+LEN S GA+MSAMD+++RNAG+M+ + TL YNRTRQA IT ELIEIISGA A+ Sbjct: 110 MNQG--KEVKIFCVGRKGYEQLRRNFDRQIVENIELRSVRQLGFVNAEDIAAKVIARFDAGEFDVCTLFYSRFKSVISQIPTAQQII-PLVVEAPAAGAGPA---PSYEYEPEED--EILASLLPRNLAVQIFRALLENNASFYGAQMSAMDNATRNAGDMIRKQTLIYNRTRQAMITKELIEIISGAEAI 292
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_RHOP2 (ATP synthase gamma chain OS=Rhodopseudomonas palustris (strain HaA2) GN=atpG PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 4.371e-23 Identity = 82/195 (42.05%), Postives = 107/195 (54.87%), Query Frame = 2 Query: 29 LNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV-------EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592 +N G KE K+ +G K L R K I + L + V A+DI K V EFD + YS+F SV+S +PT A L P +VE A + G + YE E + EIL L + +F A+LEN S GA+MSAMD+++RNAG+M+ + TL YNRTRQA IT ELIEIISGA A+ Sbjct: 110 MNQG--KEVKFFCVGRKGYEQLRRTFDKQIIENLELRSVRQLGF----VNAEDIAKKVIARFNAGEFDVCTLFYSRFKSVISQIPT-AQQLIPLVVE--APAAGSVATSYEYEPE----EDEILSTLLPRNLAVQIFRALLENNASFYGAQMSAMDNATRNAGDMIRKQTLIYNRTRQAMITKELIEIISGAEAI 291
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_ERYLH (ATP synthase gamma chain OS=Erythrobacter litoralis (strain HTCC2594) GN=atpG PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 5.709e-23 Identity = 73/200 (36.50%), Postives = 113/200 (56.50%), Query Frame = 2 Query: 5 KISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDI-ELIITELQKNPLNYTQVSVLAD---DILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592 K +K+ K K+ ++ ++G+K +A + RD +K I + T K P + + +A+ D+ + EFD ++Y F S + PT ++ E E G + E E GE EIL+ L +F A+LE SEQGA M+AMD+++RNAG+++++LT+ YNR+RQA+ITTELIEII+GA AL Sbjct: 99 KEAKAQAKKLIAAGKDVQFYLVGKKGRAPIKRDYEKQIAKHFDTSTVKQP-GFEEADAIANELIDMFEAGEFDVAHLVYPTFKSALVQDPTTNQLIPVPSPEGEGTGGDAV-----VEYEPGEE--EILEELLPRYVKTQLFGALLEREASEQGASMTAMDNATRNAGDLINKLTIQYNRSRQAAITTELIEIIAGAEAL 290
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_BRASB (ATP synthase gamma chain OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=atpG PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 5.709e-23 Identity = 79/200 (39.50%), Postives = 110/200 (55.00%), Query Frame = 2 Query: 14 KSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV-------EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592 ++L +N G K+ K+ +G K L R +K I + + + V A+DI K V EFD + YS+F SV++ +PT ++ P +VE A + + L YE E + EIL L +F A+LEN S GA+MSAMD+++RNAGEM+ + TL YNRTRQA IT ELIEIISGA A+ Sbjct: 105 RALALMNQG--KDVKFFCVGRKGYEQLRRQFEKQIIAHVDLRSVRQIGF----VHAEDIAKQVIARFDAGEFDVCTLFYSRFKSVIAQIPTAQQII-PLVVEAPAANAAPVA-LYEYEPE----EDEILSALLPRNVGVQIFRALLENNASFYGAQMSAMDNATRNAGEMIRKQTLVYNRTRQAQITKELIEIISGAEAV 292
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_RHOCA (ATP synthase gamma chain OS=Rhodobacter capsulatus GN=atpG PE=1 SV=3) HSP 1 Score: 107.842 bits (268), Expect = 7.456e-23 Identity = 77/197 (39.09%), Postives = 111/197 (56.35%), Query Frame = 2 Query: 11 SKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592 +K++ L G K K + +G+K + L RD + I L+Y ++ +I+ E +D I +S F SV+S +PT V+ P E +A S + Y+ E G+ EIL L + +F A+LEN S GA+MSAMD+++RNAG+M+DRLT+ YNR+RQA+IT ELIEIISGA AL Sbjct: 104 AKAMELLAQG--KTVKILTVGKKGRDALRRDLGQYYIDHIDLSDVKKLSYPVAQKISQNIIDRFEAGEYDVATIFFSVFQSVISQVPTAKQVI-PAQFETDAASASAV-----YDYEPGDQ--EILTALLPRAVATAIFAALLENNASFNGAQMSAMDNATRNAGDMIDRLTIEYNRSRQAAITKELIEIISGAEAL 290
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_GRABC (ATP synthase gamma chain OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=atpG PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 7.456e-23 Identity = 71/202 (35.15%), Postives = 108/202 (53.47%), Query Frame = 2 Query: 2 GKISKSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKL--GELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592 G+ +++L K K + +G KA+ L RD + + + K L + L+ I + EFD ++Y+ F+SV+S P ++ ++ + G G YE E E +L L + ++ A+LE+A E ARM+AMD+++RNAG+M+ RL+LTYNRTRQA+IT ELIEIISGA AL Sbjct: 99 GRAARTLANRLESEGKTVKILTVGRKARDYLRRDLETRLLPETSLAGKKVLAFADALALSQQITARLDAGEFDVCTLVYNHFNSVISQTPGETQLIPAQVPQAAPADAGASSNGAKAVYEFEPDEET--LLAKLLPQNLAIQIYRAILESAAGEHAARMTAMDNATRNAGDMIKRLSLTYNRTRQANITRELIEIISGAEAL 298
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_BRASO (ATP synthase gamma chain OS=Bradyrhizobium sp. (strain ORS278) GN=atpG PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 7.456e-23 Identity = 79/200 (39.50%), Postives = 110/200 (55.00%), Query Frame = 2 Query: 14 KSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV-------EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592 ++L +N G K+ K+ +G K L R +K I + + + V A+DI K V EFD + YS+F SV++ +PT ++ P +VE A + + L YE E + EIL L +F A+LEN S GA+MSAMD+++RNAGEM+ + TL YNRTRQA IT ELIEIISGA A+ Sbjct: 105 RALALMNQG--KDVKFFCVGRKGYEQLRRQFEKQIIAHVDLRSVRQIGF----VHAEDIAKQVIARFDAGEFDVCTLFYSRFKSVIAQIPTAQQII-PLVVEAPAANAAPVA-LYEYEPE----EDEILSALLPRNVGVQIFRALLENNASFYGAQMSAMDNATRNAGEMIRKQTLVYNRTRQAMITKELIEIISGAEAV 292
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_AGRVS (ATP synthase gamma chain OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=atpG PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 7.456e-23 Identity = 62/130 (47.69%), Postives = 82/130 (63.08%), Query Frame = 2 Query: 203 EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592 EFD + YS+F SV+S +PT A L P V + + YE + IL +L + +F A+LENA E GA+MSAMD+++RNAGEM+++LTL+YNR RQA ITTELIEII+GA AL Sbjct: 169 EFDVCTLFYSEFKSVISQIPT-ARQLIPAAVGDAPAASSSAAAIYDYEPDAAS----ILSDLIPRNIAVQIFRALLENAAGEMGAKMSAMDNATRNAGEMINKLTLSYNRQRQAKITTELIEIIAGAEAL 293
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_AGRRK (ATP synthase gamma chain OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=atpG PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 7.456e-23 Identity = 71/185 (38.38%), Postives = 106/185 (57.30%), Query Frame = 2 Query: 47 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVL---SPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592 K+ ++ E A I+ R +D++ + E N + ++ + EFD + YS+F SV+S +PT ++ +P +VE +A G + E YE + IL +L S +F A+LEN E G++MSAMD+++RNAGEM+++LTL+YNR RQA IT ELIEIISGA AL Sbjct: 123 KKGYDILRREYASLIIERKELRDVKRVGFE------NADALGKRIIEMFEAGEFDVCTLFYSEFKSVISQVPTGLQLIPASAPAVVEEDAAHKGAVYE---YEPDAAS----ILADLIPRNISVQIFRALLENVAGEMGSKMSAMDNATRNAGEMINKLTLSYNRQRQAQITKELIEIISGAEAL 294
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_NITHX (ATP synthase gamma chain OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=atpG PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 9.738e-23 Identity = 73/196 (37.24%), Postives = 105/196 (53.57%), Query Frame = 2 Query: 14 KSLHKLNSGPDKENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592 ++L +N G K+ K+ +G K L R +K I + L + +A ++ EFD + YS+F SV++ +PT ++ E+ A +G YE E E EIL L + +F A+LEN S GA+MSAMD+++RNAG+M+ + TL YNRTRQA IT ELIEIISGA A+ Sbjct: 105 RALALMNQG--KDVKFFCVGRKGYEQLRRTFEKQIVENVELRSVRQLGFVNAEAIAKKVIARFNAGEFDVCTLFYSRFKSVIAQVPTAQQIIPLEVEAPAANAG----PAPFYEYEPEED--EILTRLLPRNLAVQIFRALLENNASFYGAQMSAMDNATRNAGDMIRKQTLVYNRTRQAMITKELIEIISGAEAI 292 The following BLAST results are available for this feature:
BLAST of FC872689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC872689 ID=FC872689; Name=FC872689; organism=Citrus clementina; type=EST; length=827bpback to top |