FC872689

Overview
NameFC872689
Unique NameFC872689
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length827
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_AGRT5 (ATP synthase gamma chain OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=atpG PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.272e-22
Identity = 70/173 (40.46%), Postives = 98/173 (56.65%), Query Frame = 2
Query:   74 EKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            E A  I+ R   +D++ +  E      N  Q++     +    EFD   +IYS+F SV+S +PT   ++       EA    +  +   YE E       IL++L     S  +F A+LEN   E GA+MSAMD+++RNAGEM+++LTL+YNR RQA IT ELIEIISGA AL
Sbjct:  131 EFASLIIERIELRDVKKVGFE------NADQIAKKVISLFNAGEFDVCTLIYSEFKSVISQIPTGLQLIPAATPVVEA---AETTQTAVYEYE--PDAASILEDLIPRNISVQVFRALLENVAGEMGAKMSAMDNATRNAGEMINKLTLSYNRQRQAQITKELIEIISGAEAL 292          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_RHISN (ATP synthase gamma chain OS=Rhizobium sp. (strain NGR234) GN=atpG PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.661e-22
Identity = 75/189 (39.68%), Postives = 105/189 (55.56%), Query Frame = 2
Query:   47 KENKYVILGEKAKAILVRDSKKDI--ELIITELQKNPL-NYTQVSVLADDILKNVEFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDS----YEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            K  K + +G+K   IL R+    I   + + E++K    N  ++     ++ +  EFD   + YS+F SV+S +PT   ++        A +G    E DS    YE E       IL +L     S  +F A+LEN   E GA+MSAMD+++RNAGEM+++LTL YNR RQA IT ELIEIISGA AL
Sbjct:  114 KTVKIICVGKKGFDILRREFASLIIDRVDLREVKKIGFENADRIGHKVIELFEKGEFDVCTLFYSEFKSVISQVPTAQQLIP-------ASAGPVAAEADSASAVYEYE--PDAAAILTDLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGEMINKLTLNYNRQRQAQITKELIEIISGAEAL 293          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_RHOPT (ATP synthase gamma chain OS=Rhodopseudomonas palustris (strain TIE-1) GN=atpG PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.169e-22
Identity = 75/189 (39.68%), Postives = 103/189 (54.50%), Query Frame = 2
Query:   47 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV-------EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            K  K+  +G K    L R+ +K I   +       + +    V A+DI K V       EFD   + YS+F SV+S +PT   ++  E+    A + G +     YE E    + EIL  L     +  +F A+LEN  S  GA+MSAMD+++RNAGEM+ + TL YNRTRQA IT ELIEIISGA A+
Sbjct:  114 KTVKFFCVGRKGYEQLRRNFEKQIIDNVELRSVRQIGF----VNAEDIAKKVIARFNAGEFDVCTLFYSRFKSVISQIPTAQQLIPLEVT---APAAGTVATSYEYEPE----EDEILSGLLPRNLAVQIFRALLENNASFYGAQMSAMDNATRNAGEMIRKQTLVYNRTRQAMITKELIEIISGAEAI 291          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_RHOPA (ATP synthase gamma chain OS=Rhodopseudomonas palustris GN=atpG PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.169e-22
Identity = 75/189 (39.68%), Postives = 103/189 (54.50%), Query Frame = 2
Query:   47 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNV-------EFDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            K  K+  +G K    L R+ +K I   +       + +    V A+DI K V       EFD   + YS+F SV+S +PT   ++  E+    A + G +     YE E    + EIL  L     +  +F A+LEN  S  GA+MSAMD+++RNAGEM+ + TL YNRTRQA IT ELIEIISGA A+
Sbjct:  114 KTVKFFCVGRKGYEQLRRNFEKQIIDNVELRSVRQIGF----VNAEDIAKKVIARFNAGEFDVCTLFYSRFKSVISQIPTAQQLIPLEVT---APAAGTVATSYEYEPE----EDEILSGLLPRNLAVQIFRALLENNASFYGAQMSAMDNATRNAGEMIRKQTLVYNRTRQAMITKELIEIISGAEAI 291          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_GEOSF (ATP synthase gamma chain OS=Geobacter sp. (strain FRC-32) GN=atpG PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.169e-22
Identity = 67/155 (43.23%), Postives = 93/155 (60.00%), Query Frame = 2
Query:  152 LNYTQVSVLADDILKNV---EFDALRIIYSKFHSVVS---FLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALEG 598
            LNY   ++LA ++++     EFD + IIY+ F SV+S    L  +  V  PE  + E            YE    E  GE+L    E Q    +F ++LE+  SE GARM+AMDS+S+NA EM+ +LTL YNR RQA+ITTEL+EIISGA +++G
Sbjct:  143 LNYQTAALLAQEVIQGYLDEEFDEVFIIYNAFRSVMSQDITLEQLLPVTPPEAADEE------YAPEYIYEPSKSELLGELLPKHIEVQ----IFKSLLESVASEHGARMTAMDSASKNANEMIGKLTLQYNRARQAAITTELMEIISGAESIKG 287          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_SPHAL (ATP synthase gamma chain OS=Sphingopyxis alaskensis GN=atpG PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.833e-22
Identity = 70/186 (37.63%), Postives = 105/186 (56.45%), Query Frame = 2
Query:   47 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLS-PELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            K+  + ++G K + ++ R     I           + + Q S ++  +++  E   FD   + YSKF S +  + T   ++  P   E  A SG  +      E E GE   EIL +L     +  +F  +LENA SEQGA M+AMD+++RNAGE++++LT+ YNRTRQA+ITTELIEII+GA AL
Sbjct:  114 KKVLFYLVGRKGRPVIARLFPGQIIEQYDTTGIRDIGFDQASEISARVMELYEAGAFDVAHLFYSKFRSALLQIATGQQMIPVPPPAEAPASSGAAV------EYEPGEE--EILADLLPRNVTIQIFKGLLENAASEQGASMTAMDNATRNAGELINKLTIIYNRTRQAAITTELIEIIAGAEAL 291          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_BRUME (ATP synthase gamma chain OS=Brucella melitensis GN=atpG PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.833e-22
Identity = 71/185 (38.38%), Postives = 100/185 (54.05%), Query Frame = 2
Query:   47 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            K  K + +G+K   IL R+    +   +   +   L +     +   I+K  E   FD   + YS+F SV+S + T A  L P   + EAE       +  YE +       IL  L     S  +F A+LEN   E GA+MSAMD+++RNAG+M+++L++TYNR RQA IT ELIEIISGA AL
Sbjct:  113 KTVKIITVGKKGADILRREFSALLHDHVDLREVKQLAFVHADQIGHKIIKLFEEGAFDVCTLFYSEFKSVISQVST-AQQLIPASADNEAEMETAGDAIYEYEPD----PAAILSTLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGDMINKLSITYNRQRQAQITKELIEIISGAEAL 292          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_BRUMB (ATP synthase gamma chain OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=atpG PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.833e-22
Identity = 71/185 (38.38%), Postives = 100/185 (54.05%), Query Frame = 2
Query:   47 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            K  K + +G+K   IL R+    +   +   +   L +     +   I+K  E   FD   + YS+F SV+S + T A  L P   + EAE       +  YE +       IL  L     S  +F A+LEN   E GA+MSAMD+++RNAG+M+++L++TYNR RQA IT ELIEIISGA AL
Sbjct:  113 KTVKIITVGKKGADILRREFSALLHDHVDLREVKQLAFVHADQIGHKIIKLFEEGAFDVCTLFYSEFKSVISQVST-AQQLIPASADNEAEMETAGDAIYEYEPD----PAAILSTLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGDMINKLSITYNRQRQAQITKELIEIISGAEAL 292          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_BRUAB (ATP synthase gamma chain OS=Brucella abortus GN=atpG PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.833e-22
Identity = 71/185 (38.38%), Postives = 100/185 (54.05%), Query Frame = 2
Query:   47 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            K  K + +G+K   IL R+    +   +   +   L +     +   I+K  E   FD   + YS+F SV+S + T A  L P   + EAE       +  YE +       IL  L     S  +F A+LEN   E GA+MSAMD+++RNAG+M+++L++TYNR RQA IT ELIEIISGA AL
Sbjct:  113 KTVKIITVGKKGADILRREFSALLHDHVDLREVKQLAFVHADQIGHKIIKLFEEGAFDVCTLFYSEFKSVISQVST-AQQLIPASADNEAEMETAGDAIYEYEPD----PAAILSTLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGDMINKLSITYNRQRQAQITKELIEIISGAEAL 292          
BLAST of FC872689 vs. ExPASy Swiss-Prot
Match: ATPG_BRUA2 (ATP synthase gamma chain OS=Brucella abortus (strain 2308) GN=atpG PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.833e-22
Identity = 71/185 (38.38%), Postives = 100/185 (54.05%), Query Frame = 2
Query:   47 KENKYVILGEKAKAILVRDSKKDIELIITELQKNPLNYTQVSVLADDILKNVE---FDALRIIYSKFHSVVSFLPTMATVLSPELVEREAESGGKLGELDSYEIEGGETKGEILQNLAEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASAL 592
            K  K + +G+K   IL R+    +   +   +   L +     +   I+K  E   FD   + YS+F SV+S + T A  L P   + EAE       +  YE +       IL  L     S  +F A+LEN   E GA+MSAMD+++RNAG+M+++L++TYNR RQA IT ELIEIISGA AL
Sbjct:  113 KTVKIITVGKKGADILRREFSALLHDHVDLREVKQLAFVHADQIGHKIIKLFEEGAFDVCTLFYSEFKSVISQVST-AQQLIPASADNEAEMETAGDAIYEYEPD----PAAILSTLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGDMINKLSITYNRQRQAQITKELIEIISGAEAL 292          
The following BLAST results are available for this feature:
BLAST of FC872689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPG_AGRT51.272e-2240.46ATP synthase gamma chain OS=Agrobacterium tumefaci... [more]
ATPG_RHISN1.661e-2239.68ATP synthase gamma chain OS=Rhizobium sp. (strain ... [more]
ATPG_RHOPT2.169e-2239.68ATP synthase gamma chain OS=Rhodopseudomonas palus... [more]
ATPG_RHOPA2.169e-2239.68ATP synthase gamma chain OS=Rhodopseudomonas palus... [more]
ATPG_GEOSF2.169e-2243.23ATP synthase gamma chain OS=Geobacter sp. (strain ... [more]
ATPG_SPHAL2.833e-2237.63ATP synthase gamma chain OS=Sphingopyxis alaskensi... [more]
ATPG_BRUME2.833e-2238.38ATP synthase gamma chain OS=Brucella melitensis GN... [more]
ATPG_BRUMB2.833e-2238.38ATP synthase gamma chain OS=Brucella melitensis bi... [more]
ATPG_BRUAB2.833e-2238.38ATP synthase gamma chain OS=Brucella abortus GN=at... [more]
ATPG_BRUA22.833e-2238.38ATP synthase gamma chain OS=Brucella abortus (stra... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DB03ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1DB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872689 ID=FC872689; Name=FC872689; organism=Citrus clementina; type=EST; length=827bp
GGGTAAGATAAGCAAGAGTTTGCACAAGTTGAATTCTGGTCCCGACAAAG
AAAACAAATACGTCATCTTGGGAGAGAAGGCAAAGGCAATATTAGTACGT
GACTCAAAGAAAGATATTGAACTCATCATAACTGAGTTACAGAAAAATCC
TCTCAATTATACCCAGGTTTCCGTTCTTGCAGATGATATCTTAAAGAATG
TAGAATTTGATGCTTTGAGGATTATCTATAGCAAGTTCCATTCCGTGGTC
TCCTTTCTGCCGACAATGGCAACTGTATTATCGCCTGAGCTTGTGGAGAG
AGAAGCCGAATCTGGGGGAAAGCTTGGTGAGCTAGACTCCTATGAAATTG
AAGGCGGTGAAACAAAGGGTGAAATACTTCAAAATCTGGCTGAGTTCCAA
TTCTCTTGTGTCATGTTCAATGCGGTGTTGGAGAATGCCTGCAGTGAGCA
AGGGGCAAGGATGTCTGCCATGGATAGCTCAAGCAGAAATGCAGGAGAAA
TGCTTGATCGCCTCACTCTTACTTATAACAGAACTCGTCAAGCATCTATC
ACCACCGAGTTGATTGAGATTATATCTGGAGCATCAGCACTGGAAGGCTG
ATTACAAAAGCGACAGTGCTCACTTTTCTTGACAGTGACGAAATAAATCC
TTGGTGGAGGCTTTGTTCAAACTTCAATGTGGTACTTTCATAAGAGTTTT
TGTTGAGCTACTCCAATAATCTCTCCAGTGTTAAAACTTGGGGAATTAAC
AATTATACTTGCGATATTTTCAATATAGTTTTTGATTCTCAAAAAATAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA
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