FC872691

Overview
NameFC872691
Unique NameFC872691
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length933
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC872691 vs. ExPASy Swiss-Prot
Match: COPB2_DICDI (Coatomer subunit beta' OS=Dictyostelium discoideum GN=copb2 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.406e-13
Identity = 56/183 (30.60%), Postives = 91/183 (49.73%), Query Frame = 2 
Query:  326 NSPQLERIAALDAHVGKINCVLWWSSGRHDKLVSIDEENIFLWSLDCSNKNAQIQSKQSSGMLHYLSGGAWDPHDVNAVA-ATCESSVQFWDLRSMVKTNSIE--HAHVRNVDYDTK-KKHLLVTAADESGIHLWDLRMLKAPIQELPGHTHWTWAVCCNPEYDGFILSAGTDSTVNLWLVST 862
            N   +E+I + +AH   I C++   +  +  L S D+  I LW  +    N Q+      G  HY+   AW+P D N  A A+ + +V+ W + S     ++E     + +V+Y +  +K  L++ AD+  + +WD +  K  +Q L GH++    VC +PE    ILS   D TV LW  ST
Sbjct:   86 NYNTMEKIKSFEAHADYIRCIIVHPTLPYI-LSSSDDMFIKLWDYEKGWSNTQV----FEGHSHYVMSIAWNPKDTNQFATASLDKTVKVWSINSPHPHFTLEGHEKGINSVEYFSGGEKPYLISGADDKLVKIWDYQS-KTCVQTLEGHSNNVSVVCYHPELP-LILSGSEDGTVKLWHSST 261
The following BLAST results are available for this feature:
BLAST of FC872691 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
COPB2_DICDI6.406e-1330.60Coatomer subunit beta' OS=Dictyostelium discoideum... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DB06ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1DB06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872691 ID=FC872691; Name=FC872691; organism=Citrus clementina; type=EST; length=933bp
GGGGGCAACAATGCAAGGAGGATCTTCAGGCATAGGCTATGGTCTCAAGT
ATCAAGCTAGATGCATATCAGATGTCAAAGCAGACACGGATCACACCAGC
TTCCTCACTGGAACTCTCAGTCTCAAAGAAGAGAACGAGGTGCATTTGCT
TCGGCTTTCATCCGGTGGAACCGAGCTCATTTGCGAGGGTTTGTTCTCGC
ATCCTAACGAAATATGGGACCTCAGTTCGTGTCCGTTCGATCAACGGATT
TTCTCCACTGTTTTTTCCACTGGTGAGTCATATGGGGCAGCAATATGGCA
AATTCCAGAGTTGTATGGCCAGCTAAATTCACCTCAGTTGGAACGTATCG
CCGCTCTTGATGCACATGTTGGTAAGATTAATTGCGTTCTTTGGTGGTCA
TCTGGAAGACATGATAAATTGGTCAGCATAGACGAGGAAAATATTTTCTT
GTGGAGCTTAGATTGTTCAAACAAGAATGCCCAGATACAATCTAAACAGT
CATCTGGTATGCTGCATTATTTATCTGGTGGAGCATGGGATCCGCATGAT
GTAAATGCTGTCGCAGCGACTTGTGAATCATCAGTCCAGTTTTGGGATCT
CAGATCAATGGTGAAGACAAATTCAATCGAGCATGCGCACGTCCGCAATG
TGGACTATGACACCAAGAAAAAGCATTTACTTGTTACTGCAGCAGATGAA
TCTGGGATACATTTATGGGATCTTAGAATGCTGAAGGCACCTATCCAGGA
ACTCCCTGGACACACACACTGGACTTGGGCTGTCTGCTGTAACCCTGAGT
ATGATGGATTTATTTTGAGCGCTGGTACGGACTCGACTGTAAATTTATGG
TTGGTTTCCACGTCTAACCATGATGAGCTCCCATCTGAAAGCTTAGTTGA
ATCACCAAATCAGCGCGCTAATTCATTACTCAA
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