FC872701

Overview
NameFC872701
Unique NameFC872701
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872701 vs. ExPASy Swiss-Prot
Match: CYSK1_BRAJU (Cysteine synthase OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.083e-27
Identity = 61/94 (64.89%), Postives = 76/94 (80.85%), Query Frame = 2
Query:    5 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVENM 286
            GIGAG IP VL+V ++DEV+ VSS+E+I+ ++LLALKEGLLVGISSG      I++AKRPENAGKL V +FPS GERYLST LF++ R E E+M
Sbjct:  225 GIGAGFIPSVLEVDLIDEVVQVSSDESIDMARLLALKEGLLVGISSGAAAAAAIKLAKRPENAGKLFVAVFPSFGERYLSTVLFDATRKEAESM 318          
BLAST of FC872701 vs. ExPASy Swiss-Prot
Match: CYSKP_SOLTU (Cysteine synthase, chloroplastic/chromoplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.764e-26
Identity = 62/94 (65.96%), Postives = 74/94 (78.72%), Query Frame = 2
Query:    5 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVENM 286
            GIGAG IP  LD  ++DEVI +SS+EA+ET++ LAL+EGLLVGISSG      I+V KRPENAGKLI V+FPS GERYLS+ LF+SIR E E M
Sbjct:  289 GIGAGFIPGNLDQDVMDEVIEISSDEAVETARTLALQEGLLVGISSGAAALAAIQVGKRPENAGKLIGVVFPSYGERYLSSILFQSIREECEKM 382          
BLAST of FC872701 vs. ExPASy Swiss-Prot
Match: CYSK1_ARATH (Cysteine synthase OS=Arabidopsis thaliana GN=OASA1 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 5.132e-26
Identity = 60/97 (61.86%), Postives = 75/97 (77.32%), Query Frame = 2
Query:    5 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVENMPID 295
            GIGAG IP VL+V ++DEV+ VSS+E+I+ ++ LALKEGLLVGISSG      I++A+RPENAGKL V IFPS GERYLST LF++ R E E M  +
Sbjct:  225 GIGAGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKLAQRPENAGKLFVAIFPSFGERYLSTVLFDATRKEAEAMTFE 321          
BLAST of FC872701 vs. ExPASy Swiss-Prot
Match: CYSK2_BRAJU (Cysteine synthase OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.753e-26
Identity = 58/97 (59.79%), Postives = 75/97 (77.32%), Query Frame = 2
Query:    5 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVENMPID 295
            GIGAG IP VL+  ++DEV+ VSS+E+I+ ++LLA +EGLLVGISSG      I++AKRPENAGKL V +FPS GERYLST LF++ R E E+M  +
Sbjct:  227 GIGAGFIPNVLETNLIDEVVQVSSDESIDMARLLAREEGLLVGISSGAAAAAAIKLAKRPENAGKLFVAVFPSFGERYLSTVLFDATRKEAESMTFE 323          
BLAST of FC872701 vs. ExPASy Swiss-Prot
Match: CYSKP_CAPAN (Cysteine synthase, chloroplastic/chromoplastic OS=Capsicum annuum PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.326e-25
Identity = 60/90 (66.67%), Postives = 71/90 (78.89%), Query Frame = 2
Query:   17 GVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVENM 286
            G IP  LD  ++DEVI +SS+EA+ET+K LAL+EGLLVGISSG      I+VAKRPENAGKLI V+FPS GERYLS+ LF+SIR E E M
Sbjct:  281 GFIPGNLDQDVMDEVIEISSDEAVETAKQLALQEGLLVGISSGAAALAAIQVAKRPENAGKLIAVVFPSFGERYLSSILFQSIREECEKM 370          
BLAST of FC872701 vs. ExPASy Swiss-Prot
Match: CYSK4_ARATH (Probable cysteine synthase, chloroplastic OS=Arabidopsis thaliana GN=At3g03630 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.066e-23
Identity = 56/94 (59.57%), Postives = 69/94 (73.40%), Query Frame = 2
Query:    5 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVENM 286
            G   G +P +LDV +LDEV  VS+ EAIE ++ LAL+EGLLVGISSG      + +AKR ENAGKLI V+FPS GERY++TALF SI  EV+ M
Sbjct:  309 GDNPGYLPGILDVKLLDEVFKVSNGEAIEMARRLALEEGLLVGISSGAAAVAAVSLAKRAENAGKLITVLFPSHGERYITTALFSSINREVQEM 402          
BLAST of FC872701 vs. ExPASy Swiss-Prot
Match: CYSK_MYCTU (Cysteine synthase A OS=Mycobacterium tuberculosis GN=cysK PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.936e-23
Identity = 52/87 (59.77%), Postives = 67/87 (77.01%), Query Frame = 2
Query:    5 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALFESI 265
            GIGAG +PPVLD  ++DE+ITV +E+A+  ++ LA +EGLLVGISSG      ++VA+RPENAGKLIVV+ P  GERYLST LF  +
Sbjct:  222 GIGAGFVPPVLDQDLVDEIITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAGKLIVVVLPDFGERYLSTPLFADV 308          
BLAST of FC872701 vs. ExPASy Swiss-Prot
Match: CYSK_MYCBO (Cysteine synthase A OS=Mycobacterium bovis GN=cysK PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.936e-23
Identity = 52/87 (59.77%), Postives = 67/87 (77.01%), Query Frame = 2
Query:    5 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALFESI 265
            GIGAG +PPVLD  ++DE+ITV +E+A+  ++ LA +EGLLVGISSG      ++VA+RPENAGKLIVV+ P  GERYLST LF  +
Sbjct:  222 GIGAGFVPPVLDQDLVDEIITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAGKLIVVVLPDFGERYLSTPLFADV 308          
BLAST of FC872701 vs. ExPASy Swiss-Prot
Match: CYSK_MYCLE (Cysteine synthase A OS=Mycobacterium leprae GN=cysK PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.446e-20
Identity = 48/87 (55.17%), Postives = 65/87 (74.71%), Query Frame = 2
Query:    5 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALFESI 265
            GIGAG +P VL + ++DE++TV +EEA++ ++ LA +EGLLVGIS+G      + VA+RPEN GKLIVV+ P  GERYLST LF  +
Sbjct:  222 GIGAGFVPSVLVLDLVDEIVTVGNEEALDLARRLAKEEGLLVGISAGAAVCAALHVARRPENTGKLIVVVLPDFGERYLSTMLFADL 308          
BLAST of FC872701 vs. ExPASy Swiss-Prot
Match: CYSK_SYNY3 (Cysteine synthase OS=Synechocystis sp. (strain PCC 6803) GN=cysK PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 5.495e-20
Identity = 52/87 (59.77%), Postives = 63/87 (72.41%), Query Frame = 2
Query:    5 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALFESI 265
            GIGAG IP VLDV ++DEVI V+ EEAI   + LA +EG+L GIS+G      I+VAKRP N  KLIV+I PS GERYLST LF+ +
Sbjct:  225 GIGAGFIPEVLDVNLIDEVIAVTDEEAIAYGRRLAREEGILSGISTGAALAAAIKVAKRPANKDKLIVMIQPSFGERYLSTPLFQDL 311          
The following BLAST results are available for this feature:
BLAST of FC872701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
CYSK1_BRAJU2.083e-2764.89Cysteine synthase OS=Brassica juncea PE=2 SV=1[more]
CYSKP_SOLTU1.764e-2665.96Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSK1_ARATH5.132e-2661.86Cysteine synthase OS=Arabidopsis thaliana GN=OASA1... [more]
CYSK2_BRAJU8.753e-2659.79Cysteine synthase OS=Brassica juncea PE=2 SV=1[more]
CYSKP_CAPAN3.326e-2566.67Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSK4_ARATH4.066e-2359.57Probable cysteine synthase, chloroplastic OS=Arabi... [more]
CYSK_MYCTU6.936e-2359.77Cysteine synthase A OS=Mycobacterium tuberculosis ... [more]
CYSK_MYCBO6.936e-2359.77Cysteine synthase A OS=Mycobacterium bovis GN=cysK... [more]
CYSK_MYCLE1.446e-2055.17Cysteine synthase A OS=Mycobacterium leprae GN=cys... [more]
CYSK_SYNY35.495e-2059.77Cysteine synthase OS=Synechocystis sp. (strain PCC... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DC09ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1DC09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872701 ID=FC872701; Name=FC872701; organism=Citrus clementina; type=EST; length=680bp
GGGGGGTATTGGTGCTGGTGTCATCCCTCCTGTTTTGGACGTTGCCATGC
TCGATGAAGTTATTACAGTATCAAGTGAGGAAGCTATTGAAACTAGTAAG
CTGCTTGCCCTGAAGGAAGGTTTGCTGGTTGGAATATCTTCTGGTGCAGC
AGCGGCAGCTGCTATACGAGTAGCAAAGAGGCCTGAAAATGCAGGGAAAC
TCATTGTTGTGATTTTCCCCAGTGCTGGAGAGCGTTATCTATCCACAGCA
TTGTTCGAATCCATTAGACACGAAGTGGAAAATATGCCCATTGATTAAGA
CGTCACCAAGTTTAGTAAGCAGCTGCCTGAATTTGGGACAAACATCCCTG
CATTTTCCGTATGTGCCAGCTTATATTTACTTACTCTTTATCGACTGTAT
TTTAGTTCTTCTGATGCTGTGACGGCTAGATTCTAGAGAATGGAACTAAG
CCTTCAGCACAAGAAGATTCAATAAATTTTGTATGTAAAATTGCAATTTA
GACAACCAATCTGCTAAGAAAGCAATGCATTGTAAAATAATCTCAAATTT
GCTTCCCTTTGCTAGCAAGGTTTGGACAAGTTTGACAGATAGTTGTTTGT
TGTTATTTGCAAGCAACTTAAATTCTGCAATGAAATTAAACTTTAAACGC
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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