FC872701

Overview
NameFC872701
Unique NameFC872701
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872701 vs. ExPASy Swiss-Prot
Match: CYSK_BACSU (Cysteine synthase OS=Bacillus subtilis GN=cysK PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 3.814e-13
Identity = 39/85 (45.88%), Postives = 56/85 (65.88%), Query Frame = 2
Query:    5 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALFE 259
            GIGAG +P +L+  + DE+  V +EEA E ++  A +EG+L GISSG      ++VAK+    GK ++ I PS GERYLST L++
Sbjct:  223 GIGAGFVPDILNTEVYDEIFPVKNEEAFEYARRAAREEGILGGISSGAAIYAALQVAKK-LGKGKKVLAIIPSNGERYLSTPLYQ 306          
BLAST of FC872701 vs. ExPASy Swiss-Prot
Match: CYSK_STAHA (Cysteine synthase (Fragment) OS=Staphylococcus haemolyticus GN=cysK PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 37/84 (44.05%), Postives = 54/84 (64.29%), Query Frame = 2
Query:    5 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALF 256
            G+GAG +P  L+  + D +I V ++ A+ETS+ +A +EG+L GISSG      I+ AK     GK ++ + PS GERYLST L+
Sbjct:   69 GLGAGFVPDTLNTDIYDSIIQVGNDIAMETSRRVAKEEGILAGISSGAAIHAAIQKAKE-LGKGKTVLTVLPSNGERYLSTPLY 151          
BLAST of FC872701 vs. ExPASy Swiss-Prot
Match: CYSK_STAAW (Cysteine synthase OS=Staphylococcus aureus (strain MW2) GN=cysK PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 38/84 (45.24%), Postives = 53/84 (63.10%), Query Frame = 2
Query:    5 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALF 256
            G+GAG IP  L+  + D +I V ++ A+E S+ +A +EG+L GISSG      I+ AK     GK +V + PS GERYLST L+
Sbjct:  224 GLGAGFIPGTLNTEIYDSIIKVGNDTAMEMSRRVAKEEGILAGISSGAAIYAAIQKAKE-LGKGKTVVTVLPSNGERYLSTPLY 306          
BLAST of FC872701 vs. ExPASy Swiss-Prot
Match: CYSK_STAAS (Cysteine synthase OS=Staphylococcus aureus (strain MSSA476) GN=cysK PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 38/84 (45.24%), Postives = 53/84 (63.10%), Query Frame = 2
Query:    5 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALF 256
            G+GAG IP  L+  + D +I V ++ A+E S+ +A +EG+L GISSG      I+ AK     GK +V + PS GERYLST L+
Sbjct:  224 GLGAGFIPGTLNTEIYDSIIKVGNDTAMEMSRRVAKEEGILAGISSGAAIYAAIQKAKE-LGKGKTVVTVLPSNGERYLSTPLY 306          
BLAST of FC872701 vs. ExPASy Swiss-Prot
Match: CYSK_STAAR (Cysteine synthase OS=Staphylococcus aureus (strain MRSA252) GN=cysK PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 38/84 (45.24%), Postives = 53/84 (63.10%), Query Frame = 2
Query:    5 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALF 256
            G+GAG IP  L+  + D +I V ++ A+E S+ +A +EG+L GISSG      I+ AK     GK +V + PS GERYLST L+
Sbjct:  224 GLGAGFIPGTLNTEIYDSIIKVGNDTAMEMSRRVAKEEGILAGISSGAAIYAAIQKAKE-LGKGKTVVTVLPSNGERYLSTPLY 306          
BLAST of FC872701 vs. ExPASy Swiss-Prot
Match: CYSK_STAAN (Cysteine synthase OS=Staphylococcus aureus (strain N315) GN=cysK PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 38/84 (45.24%), Postives = 53/84 (63.10%), Query Frame = 2
Query:    5 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALF 256
            G+GAG IP  L+  + D +I V ++ A+E S+ +A +EG+L GISSG      I+ AK     GK +V + PS GERYLST L+
Sbjct:  224 GLGAGFIPGTLNTEIYDSIIKVGNDTAMEMSRRVAKEEGILAGISSGAAIYAAIQKAKE-LGKGKTVVTVLPSNGERYLSTPLY 306          
BLAST of FC872701 vs. ExPASy Swiss-Prot
Match: CYSK_STAAM (Cysteine synthase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=cysK PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 38/84 (45.24%), Postives = 53/84 (63.10%), Query Frame = 2
Query:    5 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALF 256
            G+GAG IP  L+  + D +I V ++ A+E S+ +A +EG+L GISSG      I+ AK     GK +V + PS GERYLST L+
Sbjct:  224 GLGAGFIPGTLNTEIYDSIIKVGNDTAMEMSRRVAKEEGILAGISSGAAIYAAIQKAKE-LGKGKTVVTVLPSNGERYLSTPLY 306          
BLAST of FC872701 vs. ExPASy Swiss-Prot
Match: CYSK_STAAC (Cysteine synthase OS=Staphylococcus aureus (strain COL) GN=cysK PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 38/84 (45.24%), Postives = 53/84 (63.10%), Query Frame = 2
Query:    5 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALF 256
            G+GAG IP  L+  + D +I V ++ A+E S+ +A +EG+L GISSG      I+ AK     GK +V + PS GERYLST L+
Sbjct:  224 GLGAGFIPGTLNTEIYDSIIKVGNDTAMEMSRRVAKEEGILAGISSGAAIYAAIQKAKE-LGKGKTVVTVLPSNGERYLSTPLY 306          
BLAST of FC872701 vs. ExPASy Swiss-Prot
Match: CYSK_STAES (Cysteine synthase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=cysK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 35/84 (41.67%), Postives = 53/84 (63.10%), Query Frame = 2
Query:    5 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALF 256
            G+GAG +P  L+  + D +I V ++ A++ ++ +A +EG+L GISSG      I+ AK     GK +V + PS GERYLST L+
Sbjct:  224 GLGAGFVPDTLNTEVYDSIIKVGNDTAMDMARRVAREEGILAGISSGAAIYAAIQKAKE-LGKGKTVVTVLPSNGERYLSTPLY 306          
BLAST of FC872701 vs. ExPASy Swiss-Prot
Match: CYSK_STAEQ (Cysteine synthase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=cysK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 35/84 (41.67%), Postives = 53/84 (63.10%), Query Frame = 2
Query:    5 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALF 256
            G+GAG +P  L+  + D +I V ++ A++ ++ +A +EG+L GISSG      I+ AK     GK +V + PS GERYLST L+
Sbjct:  224 GLGAGFVPDTLNTEVYDSIIKVGNDTAMDMARRVAREEGILAGISSGAAIYAAIQKAKE-LGKGKTVVTVLPSNGERYLSTPLY 306          
The following BLAST results are available for this feature:
BLAST of FC872701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
CYSK_BACSU3.814e-1345.88Cysteine synthase OS=Bacillus subtilis GN=cysK PE=... [more]
CYSK_STAHA5.508e-1244.05Cysteine synthase (Fragment) OS=Staphylococcus hae... [more]
CYSK_STAAW5.508e-1245.24Cysteine synthase OS=Staphylococcus aureus (strain... [more]
CYSK_STAAS5.508e-1245.24Cysteine synthase OS=Staphylococcus aureus (strain... [more]
CYSK_STAAR5.508e-1245.24Cysteine synthase OS=Staphylococcus aureus (strain... [more]
CYSK_STAAN5.508e-1245.24Cysteine synthase OS=Staphylococcus aureus (strain... [more]
CYSK_STAAM5.508e-1245.24Cysteine synthase OS=Staphylococcus aureus (strain... [more]
CYSK_STAAC5.508e-1245.24Cysteine synthase OS=Staphylococcus aureus (strain... [more]
CYSK_STAES2.734e-1141.67Cysteine synthase OS=Staphylococcus epidermidis (s... [more]
CYSK_STAEQ2.734e-1141.67Cysteine synthase OS=Staphylococcus epidermidis (s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DC09ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1DC09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872701 ID=FC872701; Name=FC872701; organism=Citrus clementina; type=EST; length=680bp
GGGGGGTATTGGTGCTGGTGTCATCCCTCCTGTTTTGGACGTTGCCATGC
TCGATGAAGTTATTACAGTATCAAGTGAGGAAGCTATTGAAACTAGTAAG
CTGCTTGCCCTGAAGGAAGGTTTGCTGGTTGGAATATCTTCTGGTGCAGC
AGCGGCAGCTGCTATACGAGTAGCAAAGAGGCCTGAAAATGCAGGGAAAC
TCATTGTTGTGATTTTCCCCAGTGCTGGAGAGCGTTATCTATCCACAGCA
TTGTTCGAATCCATTAGACACGAAGTGGAAAATATGCCCATTGATTAAGA
CGTCACCAAGTTTAGTAAGCAGCTGCCTGAATTTGGGACAAACATCCCTG
CATTTTCCGTATGTGCCAGCTTATATTTACTTACTCTTTATCGACTGTAT
TTTAGTTCTTCTGATGCTGTGACGGCTAGATTCTAGAGAATGGAACTAAG
CCTTCAGCACAAGAAGATTCAATAAATTTTGTATGTAAAATTGCAATTTA
GACAACCAATCTGCTAAGAAAGCAATGCATTGTAAAATAATCTCAAATTT
GCTTCCCTTTGCTAGCAAGGTTTGGACAAGTTTGACAGATAGTTGTTTGT
TGTTATTTGCAAGCAACTTAAATTCTGCAATGAAATTAAACTTTAAACGC
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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