FC872701

Overview
NameFC872701
Unique NameFC872701
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC872701 vs. ExPASy Swiss-Prot
Match: CYSM_CAMJE (Cysteine synthase B OS=Campylobacter jejuni GN=cysM PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 2 
Query:    5 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKR-PENAGKLIVVIFPSAGERYLSTALF 256
            GIGA  IP +L+  ++DEVITVS+E+AI T+K LA K GL+VGISSG        +AK+ P+   K I+ +     ERYLST LF
Sbjct:  218 GIGANFIPAILNKEVIDEVITVSNEDAINTAKELA-KSGLMVGISSGANVFAASMLAKKFPD---KRILTMLNDTAERYLSTDLF 298
[Close]
BLAST of FC872701 vs. ExPASy Swiss-Prot
Match: CYSM_BACSU (Probable cysteine synthase OS=Bacillus subtilis GN=ytkP PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 38/87 (43.68%), Postives = 53/87 (60.92%), Query Frame = 2 
Query:    5 GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGXXXXXXIRVAKRPENAGKLIVVIFPSAGERYLSTALFESI 265
            G   G IPP+L+  + DE+I +S E+A  T++ LA +EG+LVG SSG      I  AKR  +  K++V +    GERYLST L+  I
Sbjct:  226 GTSPGFIPPILNEDVYDEIIKISDEDAYTTTRRLAAEEGILVGPSSGAACFAAIETAKR-LSPDKVVVCMTADTGERYLSTDLWSFI 311
The following BLAST results are available for this feature:
BLAST of FC872701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
CYSM_CAMJE4.663e-1150.59Cysteine synthase B OS=Campylobacter jejuni GN=cys... [more]
CYSM_BACSU7.954e-1143.68Probable cysteine synthase OS=Bacillus subtilis GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DC09ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1DC09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872701 ID=FC872701; Name=FC872701; organism=Citrus clementina; type=EST; length=680bp
GGGGGGTATTGGTGCTGGTGTCATCCCTCCTGTTTTGGACGTTGCCATGC
TCGATGAAGTTATTACAGTATCAAGTGAGGAAGCTATTGAAACTAGTAAG
CTGCTTGCCCTGAAGGAAGGTTTGCTGGTTGGAATATCTTCTGGTGCAGC
AGCGGCAGCTGCTATACGAGTAGCAAAGAGGCCTGAAAATGCAGGGAAAC
TCATTGTTGTGATTTTCCCCAGTGCTGGAGAGCGTTATCTATCCACAGCA
TTGTTCGAATCCATTAGACACGAAGTGGAAAATATGCCCATTGATTAAGA
CGTCACCAAGTTTAGTAAGCAGCTGCCTGAATTTGGGACAAACATCCCTG
CATTTTCCGTATGTGCCAGCTTATATTTACTTACTCTTTATCGACTGTAT
TTTAGTTCTTCTGATGCTGTGACGGCTAGATTCTAGAGAATGGAACTAAG
CCTTCAGCACAAGAAGATTCAATAAATTTTGTATGTAAAATTGCAATTTA
GACAACCAATCTGCTAAGAAAGCAATGCATTGTAAAATAATCTCAAATTT
GCTTCCCTTTGCTAGCAAGGTTTGGACAAGTTTGACAGATAGTTGTTTGT
TGTTATTTGCAAGCAACTTAAATTCTGCAATGAAATTAAACTTTAAACGC
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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