FC872713

Overview
NameFC872713
Unique NameFC872713
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872713 vs. ExPASy Swiss-Prot
Match: RL40_LEITA (60S ribosomal protein L40 OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.890e-14
Identity = 32/52 (61.54%), Postives = 43/52 (82.69%), Query Frame = 3
Query:  261 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 416
            ++EP+L+ALA+KYN +K +CR+CYARL  RA NCRKK CGH + LR KKK++
Sbjct:    1 VMEPTLVALAKKYNWEKKVCRRCYARLPVRATNCRKKACGHCSNLRMKKKLR 52          
BLAST of FC872713 vs. ExPASy Swiss-Prot
Match: RL40_LEIMA (60S ribosomal protein L40 OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.890e-14
Identity = 32/52 (61.54%), Postives = 43/52 (82.69%), Query Frame = 3
Query:  261 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 416
            ++EP+L+ALA+KYN +K +CR+CYARL  RA NCRKK CGH + LR KKK++
Sbjct:    1 VMEPTLVALAKKYNWEKKVCRRCYARLPVRATNCRKKACGHCSNLRMKKKLR 52          
BLAST of FC872713 vs. ExPASy Swiss-Prot
Match: RL40_TRYBB (60S ribosomal protein L40 OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.423e-13
Identity = 32/52 (61.54%), Postives = 42/52 (80.77%), Query Frame = 3
Query:  261 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 416
            ++EP+L ALA+KYN +K +CR+CYARL  RA NCRKK CGH + LR KKK++
Sbjct:    1 VMEPTLEALAKKYNWEKKVCRRCYARLPVRATNCRKKGCGHCSNLRMKKKLR 52          
BLAST of FC872713 vs. ExPASy Swiss-Prot
Match: RL40_TRYCR (60S ribosomal protein L40 OS=Trypanosoma cruzi GN=FUS1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.858e-13
Identity = 32/52 (61.54%), Postives = 42/52 (80.77%), Query Frame = 3
Query:  261 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 416
            ++EP+L ALA+KYN +K +CR+CYARL  RA NCRKK CGH + LR KKK++
Sbjct:    1 VMEPTLEALAKKYNWEKKVCRRCYARLPVRASNCRKKACGHCSNLRMKKKLR 52          
BLAST of FC872713 vs. ExPASy Swiss-Prot
Match: ANUB1_HUMAN (AN1-type zinc finger and ubiquitin domain-containing protein 1 OS=Homo sapiens GN=ANUBL1 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.271e-11
Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 3
Query:   33 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGII 266
            M++F++TLTG    L V   +T+ +VKAKI+  EGIP  +Q LI+   +LE+   L DYNI +  TL LVL +RGG I
Sbjct:   28 MELFIETLTGTCFELRVSPFETVISVKAKIRRLEGIPICRQHLIWNNMELENDYCLNDYNISEGCTLKLVLAMRGGPI 105          
The following BLAST results are available for this feature:
BLAST of FC872713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
RL40_LEITA4.890e-1461.5460S ribosomal protein L40 OS=Leishmania tarentolae... [more]
RL40_LEIMA4.890e-1461.5460S ribosomal protein L40 OS=Leishmania major GN=U... [more]
RL40_TRYBB1.423e-1361.5460S ribosomal protein L40 OS=Trypanosoma brucei br... [more]
RL40_TRYCR1.858e-1361.5460S ribosomal protein L40 OS=Trypanosoma cruzi GN=... [more]
ANUB1_HUMAN2.271e-1147.44AN1-type zinc finger and ubiquitin domain-containi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CA01ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3CA01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872713 ID=FC872713; Name=FC872713; organism=Citrus clementina; type=EST; length=547bp
GGGGGTCCTTGGAAAATCATCAGAGCGTGAAGATGCAGATCTTCGTGAAA
ACCCTAACCGGAAAGACCATAACTCTCGAAGTCGAGAGCAGCGACACCAT
CGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGAATTCCCCCGGATC
AGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAAGATGGGCGTACCTTG
GCTGATTACAATATTCAGAAAGAATCCACTCTTCATTTGGTGCTGAGGCT
TAGGGGAGGTATCATTGAGCCTTCATTGATGGCTTTGGCTCGTAAATACA
ATCAGGATAAGATGATTTGCCGCAAATGTTATGCTCGTCTGCATCCCAGG
GCTGTAAATTGCCGGAAGAAGAAATGTGGCCACAGCAATCAGTTGAGGCC
TAAGAAGAAGATCAAGTAGACCACTTGCCTTAGTCATGATATGTGCCTTC
AGAGAGACATTCCAATTATGAGATGTATTTTGTTTGTTTCTGAATAGGAT
TTGGGATTTGAATTAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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