FC872726

Overview
NameFC872726
Unique NameFC872726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP156_ARATH (Pentatricopeptide repeat-containing protein At2g16880 OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.522e-12
Identity = 43/142 (30.28%), Postives = 72/142 (50.70%), Query Frame = 1
Query:    7 AYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETA 432
            A  MM EM + GI  N+ T + +L  L K  + +EA+++    + K G      TY  ++  F    +V+ A+ +WDEMK   + P +  +++LI  LCH  K + A + F E+ + G+ P    F+++      EG  E A
Sbjct:  435 ALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNS-AHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKA 575          
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP105_ARATH (Pentatricopeptide repeat-containing protein At1g64580 OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.522e-12
Identity = 45/152 (29.61%), Postives = 78/152 (51.32%), Query Frame = 1
Query:    4 DAYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDK 459
            +A  +  EM +  + PN  TY+ +++     G   +A  +F  M  K G  P V TY  ++  FC + +V+  M+++ EM  +G++     Y+TLI+  C   KL+ A K F  M+D G+ P    ++ L   L + G  E A+V+ + + K
Sbjct:  272 EARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSK-GCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQK 422          
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PPR96_ARATH (Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.906e-12
Identity = 48/157 (30.57%), Postives = 78/157 (49.68%), Query Frame = 1
Query:    4 DAYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTP 474
            +A ++ DEM K  I P+  TY  +++      R +EA  +F+ M  K    P V TY  +++ FC   +V+  M ++ EM  RG++     Y+TLI  L      D A K F++M+  G+ P    +S L   L   G  E A+V+ + + K +  P
Sbjct:  343 EAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD-CFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEP 498          

HSP 2 Score: 69.3218 bits (168), Expect = 1.718e-11
Identity = 39/138 (28.26%), Postives = 76/138 (55.07%), Query Frame = 1
Query:    4 DAYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG 417
            +A  ++D+M      PN+ T++ ++H L    +  EA ++  RM  + G +P + TY  VV   C    +D+A+ +  +M+   +   + +Y+T+I++LC+   ++DA   F EM + GIRP    +++L + L + G
Sbjct:  168 EAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAR-GCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYG 304          

HSP 3 Score: 67.781 bits (164), Expect = 5.000e-11
Identity = 42/148 (28.38%), Postives = 79/148 (53.38%), Query Frame = 1
Query:    7 AYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA-LRDEGMEETAVVLAQ 447
            A ++  +M   G+ P+  TY I+L  L K G+ E+A  VF+ + +K   EP + TY I++   C   +V+    ++  +  +GV P + +Y+T+I+  C +   ++A   F+EM + G  P    ++ L +A LRD     +A ++ +
Sbjct:  449 AQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYL-QKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKE 595          
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PPR2_ARATH (Pentatricopeptide repeat-containing protein At1g02060, chloroplastic OS=Arabidopsis thaliana GN=At1g02060 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.906e-12
Identity = 44/173 (25.43%), Postives = 77/173 (44.51%), Query Frame = 1
Query:    4 DAYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEM-------------------------------------KARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRD 411
            ++ ++   M++ GI P+  T++ +L  L+K GRT  A+ +F  M R  G  P   T+  ++  FC N+ VD A RI+ +M                                     KA  V P +  Y+TL+   C + ++D+A   F +ML  G++P    ++ L + L +
Sbjct:  156 ESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKPNAVTYNTLIKGLSE 328          
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP393_ARATH (Pentatricopeptide repeat-containing protein At5g18950 OS=Arabidopsis thaliana GN=At5g18950 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.906e-12
Identity = 38/136 (27.94%), Postives = 69/136 (50.74%), Query Frame = 1
Query:    1 GDAYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALR 408
            G A ++  EM K G+ PN   Y++++H   K G      + +  M R  G   T+ +   +++ FC + + D A  I+  M   GV P    Y+ LI   C E+K++   K ++E+  +G++P G  ++ L + L+
Sbjct:  335 GSARKLWFEMIKKGMRPNEFAYNVMIHGHFKRGEISLVEAFYNEMLRN-GYGGTMLSCNTMIKGFCSHGKSDEAFEIFKNMSETGVTPNAITYNALIKGFCKENKVEKGLKLYKELKALGLKPSGMAYAALVRNLK 469          
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP360_ARATH (Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.906e-12
Identity = 41/150 (27.33%), Postives = 75/150 (50.00%), Query Frame = 1
Query:    4 DAYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKI 453
            +A+ +M+ M   G  P   TY+ V++ L K G+ E A  VF  M R  G  P  +TY  ++   C    V    +++ +M++R V+P +  +S++++       LD A  YF  + + G+ P   +++ L Q    +GM   A+ L  ++
Sbjct:  288 EAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRS-GLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEM 436          

HSP 2 Score: 67.3958 bits (163), Expect = 6.530e-11
Identity = 40/147 (27.21%), Postives = 75/147 (51.02%), Query Frame = 1
Query:    7 AYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLF-SNLKQALRDEGMEETAVVLA 444
            A+ +  E+ + G+G N  T +I+++ L K G+ E+  +   ++  K G  P + TY  ++  +     ++ A  + + M  +G  P ++ Y+T+IN LC   K + A + F EML  G+ P    + S L +A +   + ET  V +
Sbjct:  219 AWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEK-GVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFS 364          
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP136_ARATH (Pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Arabidopsis thaliana GN=At1g80550 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.906e-12
Identity = 48/144 (33.33%), Postives = 74/144 (51.39%), Query Frame = 1
Query:    4 DAYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAV 435
            DAYRM+DEM K G  P+S TY  +   L K     E  S+F RM R  G  P + TY +++R F     +   + +W  MK  G  P    Y+ +I++L  +  LD A +Y +EM++ G+ P        +  L ++ ++ET V
Sbjct:  312 DAYRMLDEMPKRGCQPDSITYMCLFSRLEKPS---EILSLFGRMIRS-GVRPKMDTYVMLMRKFERWGFLQPVLYVWKTMKESGDTPDSAAYNAVIDALIQKGMLDMAREYEEEMIERGLSP------RRRPELVEKSLDETLV 445          
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP117_ARATH (Pentatricopeptide repeat-containing protein At1g73400, mitochondrial OS=Arabidopsis thaliana GN=At1g73400 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 7.713e-12
Identity = 43/140 (30.71%), Postives = 71/140 (50.71%), Query Frame = 1
Query:    4 DAYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSL--CHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG 417
            +AY+ +DEM   G  P+  TY+  L  L +  +T+EA  ++ RM       P+V TY +++ MF      D A   W EM  R  +  +  Y  +IN L  CH  K  +AC   +E+++ G++ P ++F +    L + G
Sbjct:  394 EAYKFLDEMSNKGYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVESR-CAPSVQTYNMLISMFFEMDDPDGAFNTWTEMDKRDCVQDVETYCAMINGLFDCHRAK--EACFLLEEVVNKGLKLPYRVFDSFLMRLSEVG 530          
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PPR9_ARATH (Pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.007e-11
Identity = 41/153 (26.80%), Postives = 75/153 (49.02%), Query Frame = 1
Query:    1 GDAYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDK 459
            G    +  EM + GI      + +V+  L K G+  E Y+VF+ M RK G++P V+ Y +++  +  +  V+ A+R+   M   G  P +  YS ++N LC   ++++A  YF      G+      +S+L   L   G  + A  L +++ +
Sbjct:  309 GSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRK-GSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSE 460          

HSP 2 Score: 69.3218 bits (168), Expect = 1.718e-11
Identity = 35/120 (29.17%), Postives = 63/120 (52.50%), Query Frame = 1
Query:    4 DAYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGI 363
            +A R+ +EM + G   +S  Y+ ++    K  + +EA ++FKRM  + G + TV TY I++       + + A+++WD M  +G+ P    +  L   LC   K+  ACK   E+  +G+
Sbjct:  450 EAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARACKILDELAPMGV 569          
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP325_ARATH (Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.007e-11
Identity = 47/147 (31.97%), Postives = 70/147 (47.62%), Query Frame = 1
Query:    1 GDAYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVL 441
            GDAY ++ EM K G  PN   Y+ ++   I+AG   +A  +   M  K G   T STY  +++ +C N Q D A R+  EM + G       ++++I  LC     D A ++  EML   + P G L + L   L   G    A+ L
Sbjct:  360 GDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSK-GLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALEL 505          

HSP 2 Score: 67.781 bits (164), Expect = 5.000e-11
Identity = 34/122 (27.87%), Postives = 66/122 (54.10%), Query Frame = 1
Query:    4 DAYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRP 369
            +A +  D+ ++ G+ P+  TY +++    KA RTEE    F  M  K   +P    Y  ++R +C + ++ MA+ + ++MK +G+ P    Y++LI  +    ++++A   F+EM   G+ P
Sbjct:  606 EAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSK-NVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEP 726          
The following BLAST results are available for this feature:
BLAST of FC872726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
PP156_ARATH4.522e-1230.28Pentatricopeptide repeat-containing protein At2g16... [more]
PP105_ARATH4.522e-1229.61Pentatricopeptide repeat-containing protein At1g64... [more]
PPR96_ARATH5.906e-1230.57Pentatricopeptide repeat-containing protein At1g62... [more]
PPR2_ARATH5.906e-1225.43Pentatricopeptide repeat-containing protein At1g02... [more]
PP393_ARATH5.906e-1227.94Pentatricopeptide repeat-containing protein At5g18... [more]
PP360_ARATH5.906e-1227.33Pentatricopeptide repeat-containing protein At5g01... [more]
PP136_ARATH5.906e-1233.33Pentatricopeptide repeat-containing protein At1g80... [more]
PP117_ARATH7.713e-1230.71Pentatricopeptide repeat-containing protein At1g73... [more]
PPR9_ARATH1.007e-1126.80Pentatricopeptide repeat-containing protein At1g03... [more]
PP325_ARATH1.007e-1131.97Pentatricopeptide repeat-containing protein At4g19... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DE04ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1DE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872726 ID=FC872726; Name=FC872726; organism=Citrus clementina; type=EST; length=609bp
GGGGATGCATATAGGATGATGGATGAGATGAGGAAGTGTGGCATTGGTCC
AAATTCTCGAACTTATGATATAGTTCTTCATCACCTAATAAAGGCTGGAA
GAACAGAAGAGGCTTATTCGGTTTTTAAGAGAATGAGTCGCAAGCCAGGG
ACTGAGCCAACTGTCAGTACCTATGAGATTGTAGTCAGGATGTTTTGCTA
CAACGCCCAAGTAGATATGGCGATGAGGATTTGGGATGAGATGAAGGCAA
GGGGAGTTCTTCCTGTAATGCACATGTACTCGACATTGATTAATAGCTTG
TGCCATGAGGACAAGCTAGATGATGCTTGCAAGTACTTTCAAGAGATGCT
GGATATTGGTATTCGACCTCCTGGGCAGTTGTTTAGTAATCTAAAACAAG
CTCTTCGAGATGAGGGAATGGAGGAAACTGCTGTTGTTTTGGCTCAGAAG
ATTGACAAATTGAGGAAAACTCCATTAGTTGATAGAGGTCAATGATAGGA
GAGACTCTAAAGCCCCTTTATTTATTTATTTTATGAATTAGCTCCAGAAC
AAGCTTTCAATGAACAGAGAGAAGTTCTGACAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
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