FC872726
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP156_ARATH (Pentatricopeptide repeat-containing protein At2g16880 OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.522e-12 Identity = 43/142 (30.28%), Postives = 72/142 (50.70%), Query Frame = 1 Query: 7 AYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETA 432 A MM EM + GI N+ T + +L L K + +EA+++ + K G TY ++ F +V+ A+ +WDEMK + P + +++LI LCH K + A + F E+ + G+ P F+++ EG E A Sbjct: 435 ALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNS-AHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKA 575
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP105_ARATH (Pentatricopeptide repeat-containing protein At1g64580 OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.522e-12 Identity = 45/152 (29.61%), Postives = 78/152 (51.32%), Query Frame = 1 Query: 4 DAYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDK 459 +A + EM + + PN TY+ +++ G +A +F M K G P V TY ++ FC + +V+ M+++ EM +G++ Y+TLI+ C KL+ A K F M+D G+ P ++ L L + G E A+V+ + + K Sbjct: 272 EARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSK-GCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQK 422
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PPR96_ARATH (Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 5.906e-12 Identity = 48/157 (30.57%), Postives = 78/157 (49.68%), Query Frame = 1 Query: 4 DAYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTP 474 +A ++ DEM K I P+ TY +++ R +EA +F+ M K P V TY +++ FC +V+ M ++ EM RG++ Y+TLI L D A K F++M+ G+ P +S L L G E A+V+ + + K + P Sbjct: 343 EAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD-CFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEP 498 HSP 2 Score: 69.3218 bits (168), Expect = 1.718e-11 Identity = 39/138 (28.26%), Postives = 76/138 (55.07%), Query Frame = 1 Query: 4 DAYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG 417 +A ++D+M PN+ T++ ++H L + EA ++ RM + G +P + TY VV C +D+A+ + +M+ + + +Y+T+I++LC+ ++DA F EM + GIRP +++L + L + G Sbjct: 168 EAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAR-GCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYG 304 HSP 3 Score: 67.781 bits (164), Expect = 5.000e-11 Identity = 42/148 (28.38%), Postives = 79/148 (53.38%), Query Frame = 1 Query: 7 AYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQA-LRDEGMEETAVVLAQ 447 A ++ +M G+ P+ TY I+L L K G+ E+A VF+ + +K EP + TY I++ C +V+ ++ + +GV P + +Y+T+I+ C + ++A F+EM + G P ++ L +A LRD +A ++ + Sbjct: 449 AQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYL-QKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKE 595
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PPR2_ARATH (Pentatricopeptide repeat-containing protein At1g02060, chloroplastic OS=Arabidopsis thaliana GN=At1g02060 PE=2 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 5.906e-12 Identity = 44/173 (25.43%), Postives = 77/173 (44.51%), Query Frame = 1 Query: 4 DAYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEM-------------------------------------KARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRD 411 ++ ++ M++ GI P+ T++ +L L+K GRT A+ +F M R G P T+ ++ FC N+ VD A RI+ +M KA V P + Y+TL+ C + ++D+A F +ML G++P ++ L + L + Sbjct: 156 ESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKPNAVTYNTLIKGLSE 328
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP393_ARATH (Pentatricopeptide repeat-containing protein At5g18950 OS=Arabidopsis thaliana GN=At5g18950 PE=2 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 5.906e-12 Identity = 38/136 (27.94%), Postives = 69/136 (50.74%), Query Frame = 1 Query: 1 GDAYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALR 408 G A ++ EM K G+ PN Y++++H K G + + M R G T+ + +++ FC + + D A I+ M GV P Y+ LI C E+K++ K ++E+ +G++P G ++ L + L+ Sbjct: 335 GSARKLWFEMIKKGMRPNEFAYNVMIHGHFKRGEISLVEAFYNEMLRN-GYGGTMLSCNTMIKGFCSHGKSDEAFEIFKNMSETGVTPNAITYNALIKGFCKENKVEKGLKLYKELKALGLKPSGMAYAALVRNLK 469
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP360_ARATH (Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 5.906e-12 Identity = 41/150 (27.33%), Postives = 75/150 (50.00%), Query Frame = 1 Query: 4 DAYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKI 453 +A+ +M+ M G P TY+ V++ L K G+ E A VF M R G P +TY ++ C V +++ +M++R V+P + +S++++ LD A YF + + G+ P +++ L Q +GM A+ L ++ Sbjct: 288 EAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRS-GLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEM 436 HSP 2 Score: 67.3958 bits (163), Expect = 6.530e-11 Identity = 40/147 (27.21%), Postives = 75/147 (51.02%), Query Frame = 1 Query: 7 AYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLF-SNLKQALRDEGMEETAVVLA 444 A+ + E+ + G+G N T +I+++ L K G+ E+ + ++ K G P + TY ++ + ++ A + + M +G P ++ Y+T+IN LC K + A + F EML G+ P + S L +A + + ET V + Sbjct: 219 AWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEK-GVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFS 364
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP136_ARATH (Pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Arabidopsis thaliana GN=At1g80550 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 5.906e-12 Identity = 48/144 (33.33%), Postives = 74/144 (51.39%), Query Frame = 1 Query: 4 DAYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAV 435 DAYRM+DEM K G P+S TY + L K E S+F RM R G P + TY +++R F + + +W MK G P Y+ +I++L + LD A +Y +EM++ G+ P + L ++ ++ET V Sbjct: 312 DAYRMLDEMPKRGCQPDSITYMCLFSRLEKPS---EILSLFGRMIRS-GVRPKMDTYVMLMRKFERWGFLQPVLYVWKTMKESGDTPDSAAYNAVIDALIQKGMLDMAREYEEEMIERGLSP------RRRPELVEKSLDETLV 445
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP117_ARATH (Pentatricopeptide repeat-containing protein At1g73400, mitochondrial OS=Arabidopsis thaliana GN=At1g73400 PE=2 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 7.713e-12 Identity = 43/140 (30.71%), Postives = 71/140 (50.71%), Query Frame = 1 Query: 4 DAYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSL--CHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG 417 +AY+ +DEM G P+ TY+ L L + +T+EA ++ RM P+V TY +++ MF D A W EM R + + Y +IN L CH K +AC +E+++ G++ P ++F + L + G Sbjct: 394 EAYKFLDEMSNKGYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVESR-CAPSVQTYNMLISMFFEMDDPDGAFNTWTEMDKRDCVQDVETYCAMINGLFDCHRAK--EACFLLEEVVNKGLKLPYRVFDSFLMRLSEVG 530
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PPR9_ARATH (Pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.007e-11 Identity = 41/153 (26.80%), Postives = 75/153 (49.02%), Query Frame = 1 Query: 1 GDAYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDK 459 G + EM + GI + +V+ L K G+ E Y+VF+ M RK G++P V+ Y +++ + + V+ A+R+ M G P + YS ++N LC ++++A YF G+ +S+L L G + A L +++ + Sbjct: 309 GSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRK-GSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSE 460 HSP 2 Score: 69.3218 bits (168), Expect = 1.718e-11 Identity = 35/120 (29.17%), Postives = 63/120 (52.50%), Query Frame = 1 Query: 4 DAYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGI 363 +A R+ +EM + G +S Y+ ++ K + +EA ++FKRM + G + TV TY I++ + + A+++WD M +G+ P + L LC K+ ACK E+ +G+ Sbjct: 450 EAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARACKILDELAPMGV 569
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP325_ARATH (Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 1.007e-11 Identity = 47/147 (31.97%), Postives = 70/147 (47.62%), Query Frame = 1 Query: 1 GDAYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVL 441 GDAY ++ EM K G PN Y+ ++ I+AG +A + M K G T STY +++ +C N Q D A R+ EM + G ++++I LC D A ++ EML + P G L + L L G A+ L Sbjct: 360 GDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSK-GLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALEL 505 HSP 2 Score: 67.781 bits (164), Expect = 5.000e-11 Identity = 34/122 (27.87%), Postives = 66/122 (54.10%), Query Frame = 1 Query: 4 DAYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRP 369 +A + D+ ++ G+ P+ TY +++ KA RTEE F M K +P Y ++R +C + ++ MA+ + ++MK +G+ P Y++LI + ++++A F+EM G+ P Sbjct: 606 EAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSK-NVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEP 726 The following BLAST results are available for this feature:
BLAST of FC872726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 86
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC872726 ID=FC872726; Name=FC872726; organism=Citrus clementina; type=EST; length=609bpback to top |