FC872726

Overview
NameFC872726
Unique NameFC872726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP282_ARATH (Pentatricopeptide repeat-containing protein At3g54980, mitochondrial OS=Arabidopsis thaliana GN=At3g54980 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.007e-11
Identity = 41/148 (27.70%), Postives = 74/148 (50.00%), Query Frame = 1
Query:   16 MMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDK 459
            M++E R C    +  +Y+ ++    K G  + A + ++ M    G  P V TY  ++   C N ++D A+ + DEMK +GV   +  Y  LI+  C    ++ A   F E+L+ G+ P   ++++L    R+ G    A+ L +K+ K
Sbjct:  574 MIEEKRLC---VSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGN-GISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLK 717          
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP190_ARATH (Pentatricopeptide repeat-containing protein At2g37230 OS=Arabidopsis thaliana GN=At2g37230 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.007e-11
Identity = 45/152 (29.61%), Postives = 74/152 (48.68%), Query Frame = 1
Query:    7 AYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG-MEETAVVLAQKIDK 459
            A R  ++M   G+ P   TY+++L     + R E A   F+ M  + G  P  +T+  ++  FC   ++D A +++ EMK   + P +  Y+T+I      D++DD  + F+EM   GI P    +S L   L D G M E   +L   + K
Sbjct:  239 AKRYFNKMVSEGVEPTRHTYNLMLWGFFLSLRLETALRFFEDMKTR-GISPDDATFNTMINGFCRFKKMDEAEKLFVEMKGNKIGPSVVSYTTMIKGYLAVDRVDDGLRIFEEMRSSGIEPNATTYSTLLPGLCDAGKMVEAKNILKNMMAK 389          
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PPR56_ARATH (Pentatricopeptide repeat-containing protein At1g22960, mitochondrial OS=Arabidopsis thaliana GN=At1g22960 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.316e-11
Identity = 42/135 (31.11%), Postives = 71/135 (52.59%), Query Frame = 1
Query:    7 AYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPG----QLFSNLKQ 399
            A  + DEM +  + P+  TY ++++   KAGR E+A+     M +K G  P V T+  ++   C    +D A R   +M+  G+ P  + Y+ LI+  C  +K ++  K ++EMLD  I P G     LF +L++
Sbjct:  569 ARNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEM-KKRGVRPNVMTHNALLYGMCKAGNIDEAYRYLCKMEEEGIPPNKYSYTMLISKNCDFEKWEEVVKLYKEMLDKEIEPDGYTHRALFKHLEK 702          
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP299_ARATH (Pentatricopeptide repeat-containing protein At4g01570 OS=Arabidopsis thaliana GN=At4g01570 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.316e-11
Identity = 40/132 (30.30%), Postives = 72/132 (54.55%), Query Frame = 1
Query:   46 GPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVL 441
            GP+  TY+ ++H L   G+ ++A  V+  + +  G EP  STY I+++  C + ++D AMRI+ EM+  G +P   +Y+ L++      K+ +AC+ F++M+  G+R     ++ L   L   G  E    L
Sbjct:  286 GPDICTYNSLIHVLCLFGKAKDALIVWDEL-KVSGHEPDNSTYRILIQGCCKSYRMDDAMRIYGEMQYNGFVPDTIVYNCLLDGTLKARKVTEACQLFEKMVQEGVRASCWTYNILIDGLFRNGRAEAGFTL 416          
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP281_ARATH (Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.316e-11
Identity = 39/129 (30.23%), Postives = 69/129 (53.49%), Query Frame = 1
Query:    7 AYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNL 393
            A  + +EMR  G  P+  TY++++  L   G+ +EA ++ K+M    G   +V TY  ++  FC   +   A  I+DEM+  GV      Y+TLI+ LC   +++DA +   +M+  G +P    +++L
Sbjct:  419 AMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELS-GCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSL 546          
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PPR38_ARATH (Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.718e-11
Identity = 40/137 (29.20%), Postives = 71/137 (51.82%), Query Frame = 1
Query:    7 AYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG 417
            AY ++ ++ K G  P++ T++ ++  L   G+  EA  +  RM    G +P V TY  +V   C +    +A+ +  +M+ R V   +  YST+I+SLC +  +D A   F+EM   GI+     +++L + L   G
Sbjct:  142 AYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVEN-GCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAG 277          
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP298_ARATH (Pentatricopeptide repeat-containing protein At4g01400, mitochondrial OS=Arabidopsis thaliana GN=At4g01400 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.718e-11
Identity = 38/121 (31.40%), Postives = 65/121 (53.72%), Query Frame = 1
Query:    7 AYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRP 369
            A+ +    R  G+ PN+R+Y++++           AY +F +M  +    P V +Y+I+++ FC   QV+ AM + D+M  +G +P    Y+TL+NSLC + +L +A K    M   G  P
Sbjct:  174 AFELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERD-VVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCRMKLKGCNP 293          

HSP 2 Score: 67.781 bits (164), Expect = 5.000e-11
Identity = 43/155 (27.74%), Postives = 72/155 (46.45%), Query Frame = 1
Query:    7 AYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKT 471
            A  ++D+M   G  P+  +Y  +L+ L +  +  EAY +  RM  K G  P +  Y  ++  FC   +   A ++ D+M + G  P    Y TLI  LC +   D+  KY +EM+  G  P   + + L +     G  E A  + + + K  +T
Sbjct:  244 AMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCRMKLK-GCNPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGLCDQGMFDEGKKYLEEMISKGFSPHFSVSNCLVKGFCSFGKVEEACDVVEVVMKNGET 397          
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP178_ARATH (Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.718e-11
Identity = 48/159 (30.19%), Postives = 78/159 (49.06%), Query Frame = 1
Query:    4 DAYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTPLV 480
            +A  +  EMR  GI  +  +Y+ +L    K GR+EEA  + + M+   G +  V TY  ++  +    + D   +++ EMK   VLP +  YSTLI+         +A + F+E    G+R    L+S L  AL   G+  +AV L  ++ K   +P V
Sbjct:  427 EALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMA-SVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNV 584          
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP100_ARATH (Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.718e-11
Identity = 41/153 (26.80%), Postives = 84/153 (54.90%), Query Frame = 1
Query:    4 DAYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEG-MEETAVVLAQKIDK 459
            DA  ++D+M + G  P++ T+  ++H L    +  EA ++  +M ++ G +P + TY  VV   C    +D+A+ + ++M+A  +   + +++T+I+SLC    ++ A   F EM   GIRP    +++L   L + G   + + +L+  ++K
Sbjct:  171 DAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQR-GCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEK 322          
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PPR12_ARATH (Pentatricopeptide repeat-containing protein At1g05665, mitochondrial OS=Arabidopsis thaliana GN=At1g05665 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.244e-11
Identity = 39/123 (31.71%), Postives = 68/123 (55.28%), Query Frame = 1
Query:   25 EMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNL 393
            E  + G+  N  +Y+IV+H + + GR +EA+ +   M  K G  P V +Y  VV  +C   ++D   ++ + MK +G+ P  ++Y ++I  LC   KL +A + F EM+  GI P   +++ L
Sbjct:  236 EFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELK-GYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTL 357          

HSP 2 Score: 68.5514 bits (166), Expect = 2.931e-11
Identity = 41/141 (29.08%), Postives = 71/141 (50.35%), Query Frame = 1
Query:    4 DAYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEE 426
            DA+R+ + M + G  PN  TY  ++  L K G  + A  +   M  K G +P + TY  +V   C +  ++ A+++  E +A G+      Y+TL+++ C   ++D A +  +EML  G++P    F+ L       GM E
Sbjct:  439 DAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMW-KIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLE 578          

HSP 3 Score: 68.1662 bits (165), Expect = 3.828e-11
Identity = 31/130 (23.85%), Postives = 69/130 (53.08%), Query Frame = 1
Query:    4 DAYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNL 393
            +A +++ E    G+  ++ TY  ++    K+G  ++A  + K M  K G +PT+ T+ +++  FC +  ++   ++ + M A+G+ P    +++L+   C  + L  A   +++M   G+ P G+ + NL
Sbjct:  509 EAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGK-GLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENL 637          
The following BLAST results are available for this feature:
BLAST of FC872726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
PP282_ARATH1.007e-1127.70Pentatricopeptide repeat-containing protein At3g54... [more]
PP190_ARATH1.007e-1129.61Pentatricopeptide repeat-containing protein At2g37... [more]
PPR56_ARATH1.316e-1131.11Pentatricopeptide repeat-containing protein At1g22... [more]
PP299_ARATH1.316e-1130.30Pentatricopeptide repeat-containing protein At4g01... [more]
PP281_ARATH1.316e-1130.23Pentatricopeptide repeat-containing protein At3g53... [more]
PPR38_ARATH1.718e-1129.20Putative pentatricopeptide repeat-containing prote... [more]
PP298_ARATH1.718e-1131.40Pentatricopeptide repeat-containing protein At4g01... [more]
PP178_ARATH1.718e-1130.19Pentatricopeptide repeat-containing protein At2g31... [more]
PP100_ARATH1.718e-1126.80Pentatricopeptide repeat-containing protein At1g63... [more]
PPR12_ARATH2.244e-1131.71Pentatricopeptide repeat-containing protein At1g05... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DE04ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1DE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872726 ID=FC872726; Name=FC872726; organism=Citrus clementina; type=EST; length=609bp
GGGGATGCATATAGGATGATGGATGAGATGAGGAAGTGTGGCATTGGTCC
AAATTCTCGAACTTATGATATAGTTCTTCATCACCTAATAAAGGCTGGAA
GAACAGAAGAGGCTTATTCGGTTTTTAAGAGAATGAGTCGCAAGCCAGGG
ACTGAGCCAACTGTCAGTACCTATGAGATTGTAGTCAGGATGTTTTGCTA
CAACGCCCAAGTAGATATGGCGATGAGGATTTGGGATGAGATGAAGGCAA
GGGGAGTTCTTCCTGTAATGCACATGTACTCGACATTGATTAATAGCTTG
TGCCATGAGGACAAGCTAGATGATGCTTGCAAGTACTTTCAAGAGATGCT
GGATATTGGTATTCGACCTCCTGGGCAGTTGTTTAGTAATCTAAAACAAG
CTCTTCGAGATGAGGGAATGGAGGAAACTGCTGTTGTTTTGGCTCAGAAG
ATTGACAAATTGAGGAAAACTCCATTAGTTGATAGAGGTCAATGATAGGA
GAGACTCTAAAGCCCCTTTATTTATTTATTTTATGAATTAGCTCCAGAAC
AAGCTTTCAATGAACAGAGAGAAGTTCTGACAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
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