FC872726

Overview
NameFC872726
Unique NameFC872726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP344_ARATH (Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.244e-11
Identity = 41/145 (28.28%), Postives = 75/145 (51.72%), Query Frame = 1
Query:    7 AYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVL 441
            A    ++M+  GI PN    +  L+ L KAGR  EA  +F  + +  G  P   TY ++++ +    ++D A+++  EM   G  P + + ++LIN+L   D++D+A K F  M ++ ++P    ++ L   L   G  + A+ L
Sbjct:  452 ALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGL-KDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIEL 595          
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP409_ARATH (Pentatricopeptide repeat-containing protein At5g40400 OS=Arabidopsis thaliana GN=At5g40400 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.931e-11
Identity = 40/150 (26.67%), Postives = 76/150 (50.67%), Query Frame = 1
Query:    4 DAYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKI 453
            D +++   M + GI PN+ T++I+ +         E     ++M  + G EP + TY  +V  +C   ++  A  ++  M  R V+P +  Y++LI  LC + ++ +A + F  M+D GI+P    ++ L  A   EGM + +  L  ++
Sbjct:  219 DCWQVYSVMCRVGIHPNTYTFNILTNVFCNDSNFREVDDFLEKMEEE-GFEPDLVTYNTLVSSYCRRGRLKEAFYLYKIMYRRRVVPDLVTYTSLIKGLCKDGRVREAHQTFHRMVDRGIKPDCMSYNTLIYAYCKEGMMQQSKKLLHEM 367          
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP152_ARATH (Pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.931e-11
Identity = 42/156 (26.92%), Postives = 75/156 (48.08%), Query Frame = 1
Query:    7 AYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTP 474
            A+   DEM K G+ P   TY+ ++H L    + E A  +  R  R+ G      TY I++  +C +     A  + DEM   G+ P    Y++LI  LC ++K  +A + F++++  G++P   + + L       G  + A  L +++D +   P
Sbjct:  346 AFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAA-EILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINP 500          
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP444_ARATH (Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.828e-11
Identity = 35/121 (28.93%), Postives = 65/121 (53.72%), Query Frame = 1
Query:    1 GDAYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGI 363
            G A  ++ +MR  G  PN  +Y I++    K G+ +EAY+V   MS   G +P    +  ++  FC   ++  A+ I+ EM  +G  P ++ +++LI+ LC  D++  A    ++M+  G+
Sbjct:  406 GLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSAD-GLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGV 525          
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP366_ARATH (Putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial OS=Arabidopsis thaliana GN=At5g06400 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.828e-11
Identity = 45/153 (29.41%), Postives = 70/153 (45.75%), Query Frame = 1
Query:    1 GDAYRMMDE---MRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQK 450
            GD  + +D+   M++ G  P    Y  ++ +  K  + E+     ++M  +   EP+V TY  ++  +    +V+ A   +  M+ RG  P    YS  IN LC   K +DA K   EMLD GI P    F  +   L  EG  + A +  QK
Sbjct:  868 GDLQKALDKVNSMKEIGTKPGVHVYTSLIVYFFKEKQLEKVLETCQKMEGE-SCEPSVVTYTAMICGYMSLGKVEEAWNAFRNMEERGTSPDFKTYSKFINCLCQACKSEDALKLLSEMLDKGIAPSTINFRTVFYGLNREGKHDLARIALQK 1019          
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP221_ARATH (Pentatricopeptide repeat-containing protein At3g09060 OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.828e-11
Identity = 43/150 (28.67%), Postives = 73/150 (48.67%), Query Frame = 1
Query:    4 DAYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKI 453
            D ++ M E+  C   P  R+Y+ +L+  ++A +  +  S+F       G  P + TY ++++M C   + + A    D M   G  P +  YST+IN L    KLDDA + F EM + G+ P    ++ L      E   +TA+ L  ++
Sbjct:   99 DVFKRMREIFGCE--PAIRSYNTLLNAFVEAKQWVKVESLFAYFETA-GVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRL 245          
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP413_ARATH (Pentatricopeptide repeat-containing protein At5g42310, mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.000e-11
Identity = 40/143 (27.97%), Postives = 74/143 (51.75%), Query Frame = 1
Query:    7 AYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAV 435
            A    D M   GI P+  T++ ++    K GR   A  +F+ M R+ G  P  +TY I++  +    + D   R+  +MK++G+LP +  ++TL++      + +DA +  +EM  +G++P   +++ L  A    G+ E AV
Sbjct:  463 AMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERR-GCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAV 604          
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP340_ARATH (Pentatricopeptide repeat-containing protein At4g28010 OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.000e-11
Identity = 42/145 (28.97%), Postives = 72/145 (49.66%), Query Frame = 1
Query:    7 AYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVL 441
            A  + +EM+  G   +  T+ I++    KAG+ +EA    K M +  G E  +  Y  ++R FC   ++D    ++DE+  RG  P    Y+TLI   C   +L +A + F+ M++ G+RP    ++ L   L   G  + A+ L
Sbjct:  196 ALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEM-KFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQL 339          
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP106_ARATH (Pentatricopeptide repeat-containing protein At1g64582, mitochondrial OS=Arabidopsis thaliana GN=At1g64582 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.000e-11
Identity = 42/155 (27.10%), Postives = 76/155 (49.03%), Query Frame = 1
Query:    7 AYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNL-----KQALRDEGMEETAVVLAQKID 456
            A  ++ +M K G  P+  T+  +LH      R  +A+S+   M  K G EP V  Y  ++   C N ++++A+ + +EM+ +G+   +  Y+TL+  LC+  +  DA +  ++M+   I P    F+ L     KQ   DE  E    ++   +D
Sbjct:  125 ALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMV-KSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVD 278          
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP103_ARATH (Pentatricopeptide repeat-containing protein At1g64100 OS=Arabidopsis thaliana GN=At1g64100 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.000e-11
Identity = 44/156 (28.21%), Postives = 78/156 (50.00%), Query Frame = 1
Query:    4 DAYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPG-----QLFSNLKQALRDEGMEETAVVLAQKID 456
            +A ++ DEM    I P++ TY+ +++   K  R ++A  +F  M+      P V T+  ++ ++C   +VD  M++  E+  RG++     Y+TLI+  C  D L+ A   FQEM+  G+ P        L+   +    +E +E   V+   KID
Sbjct:  384 EAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMA-----SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKID 534          
The following BLAST results are available for this feature:
BLAST of FC872726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
PP344_ARATH2.244e-1128.28Pentatricopeptide repeat-containing protein At4g31... [more]
PP409_ARATH2.931e-1126.67Pentatricopeptide repeat-containing protein At5g40... [more]
PP152_ARATH2.931e-1126.92Pentatricopeptide repeat-containing protein At2g15... [more]
PP444_ARATH3.828e-1128.93Pentatricopeptide repeat-containing protein At5g64... [more]
PP366_ARATH3.828e-1129.41Putative pentatricopeptide repeat-containing prote... [more]
PP221_ARATH3.828e-1128.67Pentatricopeptide repeat-containing protein At3g09... [more]
PP413_ARATH5.000e-1127.97Pentatricopeptide repeat-containing protein At5g42... [more]
PP340_ARATH5.000e-1128.97Pentatricopeptide repeat-containing protein At4g28... [more]
PP106_ARATH5.000e-1127.10Pentatricopeptide repeat-containing protein At1g64... [more]
PP103_ARATH5.000e-1128.21Pentatricopeptide repeat-containing protein At1g64... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB1DE04ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1DE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872726 ID=FC872726; Name=FC872726; organism=Citrus clementina; type=EST; length=609bp
GGGGATGCATATAGGATGATGGATGAGATGAGGAAGTGTGGCATTGGTCC
AAATTCTCGAACTTATGATATAGTTCTTCATCACCTAATAAAGGCTGGAA
GAACAGAAGAGGCTTATTCGGTTTTTAAGAGAATGAGTCGCAAGCCAGGG
ACTGAGCCAACTGTCAGTACCTATGAGATTGTAGTCAGGATGTTTTGCTA
CAACGCCCAAGTAGATATGGCGATGAGGATTTGGGATGAGATGAAGGCAA
GGGGAGTTCTTCCTGTAATGCACATGTACTCGACATTGATTAATAGCTTG
TGCCATGAGGACAAGCTAGATGATGCTTGCAAGTACTTTCAAGAGATGCT
GGATATTGGTATTCGACCTCCTGGGCAGTTGTTTAGTAATCTAAAACAAG
CTCTTCGAGATGAGGGAATGGAGGAAACTGCTGTTGTTTTGGCTCAGAAG
ATTGACAAATTGAGGAAAACTCCATTAGTTGATAGAGGTCAATGATAGGA
GAGACTCTAAAGCCCCTTTATTTATTTATTTTATGAATTAGCTCCAGAAC
AAGCTTTCAATGAACAGAGAGAAGTTCTGACAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
back to top