FC872726
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP344_ARATH (Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.244e-11 Identity = 41/145 (28.28%), Postives = 75/145 (51.72%), Query Frame = 1 Query: 7 AYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVL 441 A ++M+ GI PN + L+ L KAGR EA +F + + G P TY ++++ + ++D A+++ EM G P + + ++LIN+L D++D+A K F M ++ ++P ++ L L G + A+ L Sbjct: 452 ALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGL-KDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIEL 595
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP409_ARATH (Pentatricopeptide repeat-containing protein At5g40400 OS=Arabidopsis thaliana GN=At5g40400 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.931e-11 Identity = 40/150 (26.67%), Postives = 76/150 (50.67%), Query Frame = 1 Query: 4 DAYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKI 453 D +++ M + GI PN+ T++I+ + E ++M + G EP + TY +V +C ++ A ++ M R V+P + Y++LI LC + ++ +A + F M+D GI+P ++ L A EGM + + L ++ Sbjct: 219 DCWQVYSVMCRVGIHPNTYTFNILTNVFCNDSNFREVDDFLEKMEEE-GFEPDLVTYNTLVSSYCRRGRLKEAFYLYKIMYRRRVVPDLVTYTSLIKGLCKDGRVREAHQTFHRMVDRGIKPDCMSYNTLIYAYCKEGMMQQSKKLLHEM 367
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP152_ARATH (Pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.931e-11 Identity = 42/156 (26.92%), Postives = 75/156 (48.08%), Query Frame = 1 Query: 7 AYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKIDKLRKTP 474 A+ DEM K G+ P TY+ ++H L + E A + R R+ G TY I++ +C + A + DEM G+ P Y++LI LC ++K +A + F++++ G++P + + L G + A L +++D + P Sbjct: 346 AFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAA-EILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINP 500
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP444_ARATH (Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.828e-11 Identity = 35/121 (28.93%), Postives = 65/121 (53.72%), Query Frame = 1 Query: 1 GDAYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGI 363 G A ++ +MR G PN +Y I++ K G+ +EAY+V MS G +P + ++ FC ++ A+ I+ EM +G P ++ +++LI+ LC D++ A ++M+ G+ Sbjct: 406 GLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSAD-GLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGV 525
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP366_ARATH (Putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial OS=Arabidopsis thaliana GN=At5g06400 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.828e-11 Identity = 45/153 (29.41%), Postives = 70/153 (45.75%), Query Frame = 1 Query: 1 GDAYRMMDE---MRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQK 450 GD + +D+ M++ G P Y ++ + K + E+ ++M + EP+V TY ++ + +V+ A + M+ RG P YS IN LC K +DA K EMLD GI P F + L EG + A + QK Sbjct: 868 GDLQKALDKVNSMKEIGTKPGVHVYTSLIVYFFKEKQLEKVLETCQKMEGE-SCEPSVVTYTAMICGYMSLGKVEEAWNAFRNMEERGTSPDFKTYSKFINCLCQACKSEDALKLLSEMLDKGIAPSTINFRTVFYGLNREGKHDLARIALQK 1019
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP221_ARATH (Pentatricopeptide repeat-containing protein At3g09060 OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.828e-11 Identity = 43/150 (28.67%), Postives = 73/150 (48.67%), Query Frame = 1 Query: 4 DAYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVLAQKI 453 D ++ M E+ C P R+Y+ +L+ ++A + + S+F G P + TY ++++M C + + A D M G P + YST+IN L KLDDA + F EM + G+ P ++ L E +TA+ L ++ Sbjct: 99 DVFKRMREIFGCE--PAIRSYNTLLNAFVEAKQWVKVESLFAYFETA-GVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRL 245
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP413_ARATH (Pentatricopeptide repeat-containing protein At5g42310, mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.000e-11 Identity = 40/143 (27.97%), Postives = 74/143 (51.75%), Query Frame = 1 Query: 7 AYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAV 435 A D M GI P+ T++ ++ K GR A +F+ M R+ G P +TY I++ + + D R+ +MK++G+LP + ++TL++ + +DA + +EM +G++P +++ L A G+ E AV Sbjct: 463 AMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERR-GCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAV 604
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP340_ARATH (Pentatricopeptide repeat-containing protein At4g28010 OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.000e-11 Identity = 42/145 (28.97%), Postives = 72/145 (49.66%), Query Frame = 1 Query: 7 AYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNLKQALRDEGMEETAVVL 441 A + +EM+ G + T+ I++ KAG+ +EA K M + G E + Y ++R FC ++D ++DE+ RG P Y+TLI C +L +A + F+ M++ G+RP ++ L L G + A+ L Sbjct: 196 ALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEM-KFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQL 339
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP106_ARATH (Pentatricopeptide repeat-containing protein At1g64582, mitochondrial OS=Arabidopsis thaliana GN=At1g64582 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.000e-11 Identity = 42/155 (27.10%), Postives = 76/155 (49.03%), Query Frame = 1 Query: 7 AYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPGQLFSNL-----KQALRDEGMEETAVVLAQKID 456 A ++ +M K G P+ T+ +LH R +A+S+ M K G EP V Y ++ C N ++++A+ + +EM+ +G+ + Y+TL+ LC+ + DA + ++M+ I P F+ L KQ DE E ++ +D Sbjct: 125 ALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMV-KSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVD 278
BLAST of FC872726 vs. ExPASy Swiss-Prot
Match: PP103_ARATH (Pentatricopeptide repeat-containing protein At1g64100 OS=Arabidopsis thaliana GN=At1g64100 PE=2 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 5.000e-11 Identity = 44/156 (28.21%), Postives = 78/156 (50.00%), Query Frame = 1 Query: 4 DAYRMMDEMRKCGIGPNSRTYDIVLHHLIKAGRTEEAYSVFKRMSRKPGTEPTVSTYEIVVRMFCYNAQVDMAMRIWDEMKARGVLPVMHMYSTLINSLCHEDKLDDACKYFQEMLDIGIRPPG-----QLFSNLKQALRDEGMEETAVVLAQKID 456 +A ++ DEM I P++ TY+ +++ K R ++A +F M+ P V T+ ++ ++C +VD M++ E+ RG++ Y+TLI+ C D L+ A FQEM+ G+ P L+ + +E +E V+ KID Sbjct: 384 EAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMA-----SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKID 534 The following BLAST results are available for this feature:
BLAST of FC872726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 86
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Sequences
The
following sequences are available for this feature:
EST sequence >FC872726 ID=FC872726; Name=FC872726; organism=Citrus clementina; type=EST; length=609bpback to top |