FC872848

Overview
NameFC872848
Unique NameFC872848
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYC_CANAL (Serine hydroxymethyltransferase, cytosolic OS=Candida albicans GN=SHM2 PE=1 SV=3)

HSP 1 Score: 179.104 bits (453), Expect = 2.008e-44
Identity = 92/192 (47.92%), Postives = 131/192 (68.23%), Query Frame = 1
Query:   19 VYDFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGK---LLKDFNKGLVNNKD-IEALKADVEKFASSFDM 582
            +YD E+ INF+VFP  QGGPHNH + ALA ALKQA+TP FK Y +QV  NA AL +  T KGY LV+ GT++H+VL  L+   + G +VE +C+  NI +NKN++ GD SAL PGGVRIG PAMT+RGL E+DF++I  ++  AV    E+Q +  K    LKDF   +  + + ++A++ ++ ++A SF +
Sbjct:  277 LYDLENPINFSVFPGHQGGPHNHTIAALATALKQANTPEFKEYQEQVLKNAKALESEFTKKGYKLVSDGTDSHMVLVSLKDKQIDGARVETVCEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGLGEEDFKKIVSYIDFAVNYAKEVQSQLPKDANKLKDFKNAVSGDSEKLKAVRDEIYQWAGSFPL 468          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYC_SCHPO (Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe GN=shm2 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.844e-44
Identity = 98/197 (49.75%), Postives = 126/197 (63.96%), Query Frame = 1
Query:   19 VYDFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQ----KEYGKLLKDFNKGLVNN----KDIEALKADVEKFASSFDMP 585
            +Y+ EDKINF+VFP  QGGPHNH + ALAVAL QA TP F  Y K V +NA A+ N    +GY LV+GGT+ HLVL DL   G+ G +VE++ +L NI+ NKN V GD SAL P G+R+GTPA T+RG  EKDFE++ E +   V+LT +I     KE     +DF K  V +     +I  LK +V  +A  FD P
Sbjct:  276 LYELEDKINFSVFPGHQGGPHNHTITALAVALGQAKTPEFYQYQKDVLSNAKAMANAFITRGYKLVSGGTDTHLVLVDLTDKGVDGARVERILELVNISANKNTVPGDKSALIPRGLRLGTPACTTRGFDEKDFERVVELIDEVVSLTKKINEAALKEGKSKFRDF-KAYVGDGSKFSEIAKLKKEVITWAGKFDFP 471          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYM_CANGA (Serine hydroxymethyltransferase, mitochondrial OS=Candida glabrata GN=SHM1 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.438e-43
Identity = 85/196 (43.37%), Postives = 127/196 (64.80%), Query Frame = 1
Query:   22 YDFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQ-------KEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 588
            + F+  INF+VFP  QGGPHNH + ALAVALKQA TP F  Y KQV +NA A G+ L  +G+ LV+GGT+NHL+L +L  +G+ G ++E + +  NI  NKN + GD SAL P G+R+GTPAMT+RG  E+DF+++ E++  AV L++ ++       K+    L  F +    ++ ++ L  +V  +  +F +PG
Sbjct:  288 FTFDKTINFSVFPGHQGGPHNHTISALAVALKQAKTPEFVEYQKQVVSNAKAFGDELLKRGFELVSGGTDNHLLLLNLSNMGIDGARLEAILEKINIAANKNTIPGDKSALFPSGLRVGTPAMTTRGFQEQDFKKVAEYIDNAVKLSIALKSQESADAKDVRSKLNSFKQLCDQSEPVQKLAEEVSSWVGTFPVPG 483          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYC_YEAST (Serine hydroxymethyltransferase, cytosolic OS=Saccharomyces cerevisiae GN=SHM2 PE=1 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 8.438e-43
Identity = 89/192 (46.35%), Postives = 125/192 (65.10%), Query Frame = 1
Query:   19 VYDFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGK---LLKDFNKGLVNNKDI-EALKADVEKFASSFDM 582
            +YD E+ INF+VFP  QGGPHNH + ALA ALKQA+TP FK Y  QV  NA AL +     GY LV+ GT++H+VL  LR  G+ G +VE +C+  NI +NKN++ GD SAL PGGVRIG PAMT+RG+ E+DF +I +++++AV    ++Q+   K    LKDF   +    D+    K ++  +A  + +
Sbjct:  276 LYDLENPINFSVFPGHQGGPHNHTIAALATALKQAATPEFKEYQTQVLKNAKALESEFKNLGYRLVSNGTDSHMVLVSLREKGVDGARVEYICEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGMGEEDFHRIVQYINKAVEFAQQVQQSLPKDACRLKDFKAKVDEGSDVLNTWKKEIYDWAGEYPL 467          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYD_SCHPO (Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe GN=SPAC24C9.12c PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.329e-42
Identity = 88/193 (45.60%), Postives = 122/193 (63.21%), Query Frame = 1
Query:   22 YDFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGK---LLKDFNKGLVNNK---DIEALKADVEKFASSFDM 582
            YD EDKINF+VFP  QGGPHNH + ALAVALKQ   PA+K Y  QV  NA         +GY L   GT++H+VL D++  G+ G + E++ +L NI  NKN V  D SA +P G+R+GTPAMT+RG  E+DF ++ +++ RA+T    +QKE  K    LKDF   L   +   ++  L+ +V ++ASSF +
Sbjct:  271 YDLEDKINFSVFPGHQGGPHNHTITALAVALKQCQEPAYKEYQAQVVKNAKVCEEEFKKRGYKLAADGTDSHMVLVDVKSKGVDGARAERVLELINIVTNKNTVPSDKSAFSPSGIRVGTPAMTTRGFKEQDFVRVVDYIDRALTFAANLQKELPKDANKLKDFKAKLGEGEQYPELVQLQKEVAEWASSFPL 463          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYM_KLULA (Serine hydroxymethyltransferase, mitochondrial OS=Kluyveromyces lactis GN=SHM1 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.714e-41
Identity = 87/197 (44.16%), Postives = 122/197 (61.93%), Query Frame = 1
Query:   19 VYDFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKD-------IEALKADVEKFASSFDMPG 588
            +YD + +INF+VFP  QGGPHNH + ALAVALKQA+TP FK Y   V  NA   G  L  KG+ LV+GGT+ HL+L +L  LG+ G ++E L +  NI  NKN + GD SAL P G+R+GTPAMT+RG   ++F Q+  ++ RAV L + I+ +     KD    L + K+       ++ L  +V ++   F +PG
Sbjct:  300 LYDLDKRINFSVFPGHQGGPHNHTISALAVALKQAATPEFKEYQAAVVENARIFGEELVKKGFELVSGGTDTHLILINLSNLGIDGARLETLLENINIAANKNTIPGDKSALFPSGLRVGTPAMTTRGFGPQEFAQVAAYIDRAVKLAIGIKSQESPDAKDARSKLASFKELCKESDQVKQLADEVYQWVGEFPVPG 496          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYC_CANGA (Serine hydroxymethyltransferase, cytosolic OS=Candida glabrata GN=SHM2 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.545e-41
Identity = 90/191 (47.12%), Postives = 121/191 (63.35%), Query Frame = 1
Query:   22 YDFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGK---LLKDFNKGLVNNKD-IEALKADVEKFASSFDM 582
            YD E+ INF+VFP  QGGPHNH + ALA ALKQA+TP FK Y  QV  NA AL N     GY LV+ GT++H+VL  LR  G+ G +VE +C+  NI +NKN++ GD SAL PGGVRIG PAMT+RG+ E+DF +I  ++ +AV    + Q    K    LKDF   +    D +  LK ++  + + + +
Sbjct:  277 YDLENPINFSVFPGHQGGPHNHTIAALATALKQAATPEFKEYQTQVLKNAKALENEFQTLGYRLVSNGTDSHMVLVSLREKGVDGARVEYVCEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGMGEEDFHRIVRYIDQAVKFAEQTQSSLPKEANKLKDFKAKVDEIADQLAPLKKEIYDWTAEYPL 467          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYM_ASHGO (Serine hydroxymethyltransferase, mitochondrial OS=Ashbya gossypii GN=SHM1 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.898e-41
Identity = 83/184 (45.11%), Postives = 119/184 (64.67%), Query Frame = 1
Query:   19 VYDFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFAS 570
            +YD + +INF+VFP+ QGGPHNH + ALAVALKQA+TP FK Y   V  NA   G  L+ +G+SLV+GGT+ HL+L DL P+G+ G+++E + +  NI  NKN + GD SAL P G+R+GTPAMT+RG    +F ++  +++ AV L + ++ +     KD    L + K   A    V K A+
Sbjct:  299 MYDLDKRINFSVFPAHQGGPHNHTISALAVALKQAATPEFKNYQTAVVENAKVFGEELSKRGFSLVSGGTDTHLLLIDLSPMGIDGSRLETILERLNIAANKNTIPGDKSALYPSGLRVGTPAMTTRGFGPAEFGRVAAYINEAVKLAIGLKSQEPVDAKDAKTRLAHFKSFCAESEQVTKLAN 482          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYC_ASHGO (Serine hydroxymethyltransferase, cytosolic OS=Ashbya gossypii GN=SHM2 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.347e-40
Identity = 89/196 (45.41%), Postives = 121/196 (61.73%), Query Frame = 1
Query:   10 EGAVYDFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGK---LLKDFNKGLVNNKD-IEALKADVEKFASSFDMP 585
            E  +YD E  INF+VFP  QGGPHNH + ALA ALKQA+TP F+ Y + V  NA  L        Y LV+ GT++H+VL  LR  G+ G +VE +C+  NI +NKN++ GD SAL PGGVRIG PAMT+RG+ E+DF +I  +++RAV +   IQ+   K    LKDF   +    D I  L  ++  +   + +P
Sbjct:  273 EEVMYDLEGPINFSVFPGHQGGPHNHTISALATALKQATTPEFREYQELVLKNAKVLETEFKKLNYRLVSDGTDSHMVLVSLREKGVDGARVEHVCEKINIALNKNSIPGDKSALVPGGVRIGAPAMTTRGMGEEDFARIVGYINRAVEIARSIQQSLPKEANRLKDFKAKVEGGTDEIAQLAQEIYSWTEEYPLP 468          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYM_CANAL (Serine hydroxymethyltransferase, mitochondrial OS=Candida albicans GN=SHM1 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.001e-40
Identity = 85/194 (43.81%), Postives = 123/194 (63.40%), Query Frame = 1
Query:   22 YDFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQ-KEYGK----LLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 588
            Y+ E KINF VFP  QGGPHNH + ALAVALKQ + P +  Y ++V +NA    + L  KG+ LV+ GT+ HL+L DLR   + G +VE + +  NI  NKN V GD SAL P G+R+GTPAMT+RG   ++F+++ EF+ +AV + +E++ +E GK    LL  F K    +  ++ L  +V  + S + +PG
Sbjct:  298 YELERKINFLVFPGHQGGPHNHTISALAVALKQCTEPEYVKYQQEVVSNAKHFADALVSKGFKLVSDGTDTHLILVDLRSRNIDGARVEAVLERANIAANKNTVPGDVSALFPSGLRVGTPAMTTRGFGPEEFDKVAEFIDQAVNIAIELKAQEQGKVPKELLASFKKLADESDKVKQLDKEVVSWVSKYPVPG 491          
The following BLAST results are available for this feature:
BLAST of FC872848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC_CANAL2.008e-4447.92Serine hydroxymethyltransferase, cytosolic OS=Cand... [more]
GLYC_SCHPO5.844e-4449.75Probable serine hydroxymethyltransferase, cytosoli... [more]
GLYM_CANGA8.438e-4343.37Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_YEAST8.438e-4346.35Serine hydroxymethyltransferase, cytosolic OS=Sacc... [more]
GLYD_SCHPO9.329e-4245.60Probable serine hydroxymethyltransferase, cytosoli... [more]
GLYM_KLULA2.714e-4144.16Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_CANGA3.545e-4147.12Serine hydroxymethyltransferase, cytosolic OS=Cand... [more]
GLYM_ASHGO7.898e-4145.11Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_ASHGO1.347e-4045.41Serine hydroxymethyltransferase, cytosolic OS=Ashb... [more]
GLYM_CANAL3.001e-4043.81Serine hydroxymethyltransferase, mitochondrial OS=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2AB06ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2AB06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872848 ID=FC872848; Name=FC872848; organism=Citrus clementina; type=EST; length=704bp
GGGCAACCAGAGGGTGCGGTTTATGACTTTGAAGACAAGATCAACTTTGC
TGTCTTCCCATCCCTTCAAGGTGGTCCTCACAACCACCAGGTTGGTGCTC
TAGCTGTTGCCCTGAAACAGGCCTCGACCCCTGCATTCAAGGCCTATGCG
AAACAAGTCAAGGCCAATGCAGTTGCACTTGGGAACTACCTGACGGGCAA
GGGATACAGCCTTGTCACTGGTGGAACTGAGAACCACCTTGTTCTCTGGG
ATCTACGCCCTCTTGGATTGACTGGCAATAAGGTTGAGAAGCTCTGTGAC
CTTTGCAACATTACTGTGAACAAGAATGCTGTGTTTGGTGACAGCAGTGC
CTTGGCCCCTGGAGGAGTAAGAATCGGTACTCCTGCCATGACTTCCAGAG
GTTTGTTGGAGAAGGACTTCGAGCAAATTGGAGAGTTTCTTCACCGCGCT
GTGACCCTCACGTTGGAAATTCAAAAGGAGTATGGAAAGCTCTTGAAGGA
CTTCAACAAGGGTCTGGTGAACAACAAGGACATCGAGGCCCTCAAGGCTG
ATGTTGAGAAGTTCGCCAGCTCATTTGACATGCCCGGCTTTAAAATGTCC
GAGATGAAGTACAAGGATTAGGTCTCAAAGTATCATCATTATTGTTACTG
TGTTGTTAGCAACTCTTTAGTGTCGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA
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