FC872848

Overview
NameFC872848
Unique NameFC872848
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_RICCN (Serine hydroxymethyltransferase OS=Rickettsia conorii GN=glyA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.825e-29
Identity = 74/174 (42.53%), Postives = 99/174 (56.90%), Query Frame = 1
Query:   37 KINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADV 555
            KIN A+FP LQGGP  H + A AVA  +   P +K+Y +QV +NA AL + L  +GY ++TGGT+NH+VL DLR  G+TG       D   IT NKNA+ F ++S     G+R+GTPA T+RG  EKDF  +G                   ++ D   GL NN+D  AL+  V
Sbjct:  250 KINSALFPGLQGGPLMHIIAAKAVAFLENLQPEYKSYIQQVISNAKALASSLQERGYDILTGGTDNHIVLVDLRKDGITGKLAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLVGH------------------MVADILDGLKNNEDNSALEQKV 405          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_RICAE (Serine hydroxymethyltransferase OS=Rickettsia africae (strain ESF-5) GN=glyA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.825e-29
Identity = 74/174 (42.53%), Postives = 99/174 (56.90%), Query Frame = 1
Query:   37 KINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADV 555
            KIN A+FP LQGGP  H + A AVA  +   P +K+Y +QV +NA AL + L  +GY ++TGGT+NH+VL DLR  G+TG       D   IT NKNA+ F ++S     G+R+GTPA T+RG  EKDF  +G                   ++ D   GL NN+D  AL+  V
Sbjct:  250 KINSALFPGLQGGPLMHIIAAKAVAFLENLQPEYKSYIQQVISNAKALASSLQERGYDILTGGTDNHIVLVDLRKDGITGKLAANSLDRAGITCNKNAIPFDETSPFITSGIRLGTPACTTRGFKEKDFVLVGH------------------MVADILDGLKNNEDNSALEQKV 405          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_NITWN (Serine hydroxymethyltransferase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=glyA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.383e-29
Identity = 73/152 (48.03%), Postives = 90/152 (59.21%), Query Frame = 1
Query:   37 KINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGK 489
            K N A+FP LQGGP  H + A AVAL +A  P FK YAK V  NA AL   L G G+ +V+GGT+NHL+L DLRP GL GN  EK      +T NKN + F         G+R+GTPA T+RG    +F+Q+G  +  A  LT   Q E GK
Sbjct:  261 KFNSAIFPGLQGGPLMHVIAAKAVALGEALRPDFKIYAKNVVENARALAESLRGHGFDIVSGGTDNHLMLVDLRPKGLKGNVSEKALVRAGLTCNKNGIPFDPEKPFVTSGLRLGTPATTTRGFGVSEFKQVGGLI--AEVLTAIAQAEDGK 410          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_CARHZ (Serine hydroxymethyltransferase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=glyA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.383e-29
Identity = 66/136 (48.53%), Postives = 91/136 (66.91%), Query Frame = 1
Query:   37 KINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 441
            KI+  VFP +QGGP  H + A AVA K+A +P F+ Y +QV  NA AL   L  +G  LV+GGT+NHL+L D+RP+GLTG + E+L D   +TVNKNA+ +   S     G+RIGTPA+T+RG+ E +  +I E +
Sbjct:  249 KIDKTVFPGVQGGPLMHVIAAKAVAFKEALSPEFREYQQQVVNNAKALAEELKKQGLRLVSGGTDNHLMLVDVRPVGLTGKRAEQLLDEIGVTVNKNAIPYDPESPNVTSGIRIGTPAVTTRGMKEGEMAEIAEII 384          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_SORC5 (Serine hydroxymethyltransferase OS=Sorangium cellulosum (strain So ce56) GN=glyA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.113e-29
Identity = 63/135 (46.67%), Postives = 87/135 (64.44%), Query Frame = 1
Query:   40 INFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 441
            I+ AVFP LQGGPHNH   A+AVA K+AS   F+AYA+Q+  NA ALG  L  +G+ L+TGGT+NHL+L D+ P G+ G    +  D   I  N N++ F       P G+RIGTPA+TSRG+   + E++  ++
Sbjct:  255 IDKAVFPGLQGGPHNHTTAAIAVAAKEASEEGFRAYARQIVVNAQALGRALESRGFRLITGGTDNHLLLIDMTPKGIAGKPYAQALDRAGIVANYNSIPFDPRKPFDPSGLRIGTPAVTSRGMGVAEMERLAAWM 389          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_HYPME (Serine hydroxymethyltransferase OS=Hyphomicrobium methylovorum GN=glyA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.113e-29
Identity = 67/140 (47.86%), Postives = 85/140 (60.71%), Query Frame = 1
Query:   25 DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 441
            D   KIN A+FP +QGGP  H +   AVA  +A  P FK Y KQV  NA ALG  L   G++LV+GGT+ HLVL DLRP  LTG K EK     NIT NKN + F     +   G+R+G+PA T+RG    +F++IG  +
Sbjct:  258 DIAKKINSAIFPGIQGGPLMHVIAGKAVAFGEALRPDFKVYIKQVMDNARALGEVLVQNGFALVSGGTDTHLVLVDLRPKKLTGTKAEKALGRANITCNKNGIPFDPEKPMVTSGIRLGSPAGTTRGFGVAEFQEIGRLI 397          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_CLOPH (Serine hydroxymethyltransferase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=glyA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.113e-29
Identity = 68/156 (43.59%), Postives = 98/156 (62.82%), Query Frame = 1
Query:   31 EDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGD-SSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLL 495
            E K+N ++FP  QGGP  H + A A+  K+A   +FK YA ++ +NA AL N LT +G++LV+GGT+NHL+L DL+ + +TG + E + D  NIT NKN V  D +S     G+R+GTPA+T+RG  EKD   + E +   V   ++  KE  K L
Sbjct:  247 EHKLNKSIFPGTQGGPLMHVIAAKAICFKEALDDSFKDYAGKIISNAGALANELTARGFNLVSGGTDNHLMLIDLQNMNITGKEAEHILDEANITCNKNTVPNDPASPFVTSGIRLGTPAITTRGFNEKDMAVVAEAI-SLVVKDVDKNKEQAKAL 401          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_BACSK (Serine hydroxymethyltransferase OS=Bacillus clausii (strain KSM-K16) GN=glyA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.113e-29
Identity = 70/151 (46.36%), Postives = 93/151 (61.59%), Query Frame = 1
Query:   10 EGAVYDFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTL 459
            E    +F  K++ ++FP +QGGP  H + A AVA  +A +  FK YAKQ+ ANA  LG  L  +G  +V+GGT+NHL+L DLR L LTG   EK  D   IT NKNA+ F         G+RIGT A+TSRG  E + ++IGE +  A+TL
Sbjct:  240 EETAEEFGKKLDKSIFPGIQGGPLMHVIAAKAVAFGEALSDEFKTYAKQIIANAKRLGEKLQAEGVDIVSGGTDNHLLLLDLRSLQLTGKVAEKALDAVGITTNKNAIPFDPEKPFVTSGIRIGTAAVTSRGFGENEMDEIGELI--ALTL 388          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA2_RALSO (Serine hydroxymethyltransferase 2 OS=Ralstonia solanacearum GN=glyA2 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.066e-29
Identity = 69/136 (50.74%), Postives = 82/136 (60.29%), Query Frame = 1
Query:   37 KINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFL 441
            KIN AVFP LQGGP  H +   AVA  +A  P FK Y   V ANA ALG  L   G  LVTGGT+NHL+L DLRP GL G +VE+  +   IT NKN + F         G+R+GTPA T+RG    +FEQIG  +
Sbjct:  254 KINSAVFPGLQGGPLMHVIAGKAVAFGEALKPEFKTYIDSVLANAKALGEVLKAGGVDLVTGGTDNHLLLVDLRPKGLKGTQVEQALERAGITCNKNGIPFDTEKPTITSGIRLGTPAATTRGFGVAEFEQIGRLI 389          
BLAST of FC872848 vs. ExPASy Swiss-Prot
Match: GLYA_SYNWW (Serine hydroxymethyltransferase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=glyA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.935e-29
Identity = 71/165 (43.03%), Postives = 100/165 (60.61%), Query Frame = 1
Query:   25 DFEDKINFAVFPSLQGGPHNHQVGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAV-FGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTL------EIQKEYGKLLK 498
            ++ +KI+ AVFP +QGGP  H + A AV  K+A TP FKAY + +  NA  L   L  +G  +V+GGT+NHL+L D+RP GL G   E + +  NITVNKNA+ F         G+R+GTPA+TSR L   D  +    L RA+TL L      E+++E  +++K
Sbjct:  245 EWANKIDKAVFPGIQGGPLMHVIAAKAVCFKEALTPEFKAYQQDIVNNAAILAKALMEQGLRVVSGGTDNHLMLVDVRPKGLNGRDAEAILESINITVNKNAIPFDPEKPTVTSGIRVGTPAVTSRALKGDDMRE----LARAITLVLDKHDSEEVKEEARRIVK 405          
The following BLAST results are available for this feature:
BLAST of FC872848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_RICCN1.825e-2942.53Serine hydroxymethyltransferase OS=Rickettsia cono... [more]
GLYA_RICAE1.825e-2942.53Serine hydroxymethyltransferase OS=Rickettsia afri... [more]
GLYA_NITWN2.383e-2948.03Serine hydroxymethyltransferase OS=Nitrobacter win... [more]
GLYA_CARHZ2.383e-2948.53Serine hydroxymethyltransferase OS=Carboxydothermu... [more]
GLYA_SORC53.113e-2946.67Serine hydroxymethyltransferase OS=Sorangium cellu... [more]
GLYA_HYPME3.113e-2947.86Serine hydroxymethyltransferase OS=Hyphomicrobium ... [more]
GLYA_CLOPH3.113e-2943.59Serine hydroxymethyltransferase OS=Clostridium phy... [more]
GLYA_BACSK3.113e-2946.36Serine hydroxymethyltransferase OS=Bacillus clausi... [more]
GLYA2_RALSO4.066e-2950.74Serine hydroxymethyltransferase 2 OS=Ralstonia sol... [more]
GLYA_SYNWW6.935e-2943.03Serine hydroxymethyltransferase OS=Syntrophomonas ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2AB06ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2AB06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872848 ID=FC872848; Name=FC872848; organism=Citrus clementina; type=EST; length=704bp
GGGCAACCAGAGGGTGCGGTTTATGACTTTGAAGACAAGATCAACTTTGC
TGTCTTCCCATCCCTTCAAGGTGGTCCTCACAACCACCAGGTTGGTGCTC
TAGCTGTTGCCCTGAAACAGGCCTCGACCCCTGCATTCAAGGCCTATGCG
AAACAAGTCAAGGCCAATGCAGTTGCACTTGGGAACTACCTGACGGGCAA
GGGATACAGCCTTGTCACTGGTGGAACTGAGAACCACCTTGTTCTCTGGG
ATCTACGCCCTCTTGGATTGACTGGCAATAAGGTTGAGAAGCTCTGTGAC
CTTTGCAACATTACTGTGAACAAGAATGCTGTGTTTGGTGACAGCAGTGC
CTTGGCCCCTGGAGGAGTAAGAATCGGTACTCCTGCCATGACTTCCAGAG
GTTTGTTGGAGAAGGACTTCGAGCAAATTGGAGAGTTTCTTCACCGCGCT
GTGACCCTCACGTTGGAAATTCAAAAGGAGTATGGAAAGCTCTTGAAGGA
CTTCAACAAGGGTCTGGTGAACAACAAGGACATCGAGGCCCTCAAGGCTG
ATGTTGAGAAGTTCGCCAGCTCATTTGACATGCCCGGCTTTAAAATGTCC
GAGATGAAGTACAAGGATTAGGTCTCAAAGTATCATCATTATTGTTACTG
TGTTGTTAGCAACTCTTTAGTGTCGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA
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