FC872849

Overview
NameFC872849
Unique NameFC872849
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC872849 vs. ExPASy Swiss-Prot
Match: RL2_METTP (50S ribosomal protein L2P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11
Identity = 31/51 (60.78%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    4 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 156
            K+R K   WP+VRGVAMN V+HP GGG  QH G   TV R  PPG+KVG I
Sbjct:  178 KYRSKAVKWPRVRGVAMNAVDHPFGGGGRQHPGRPKTVSRGTPPGRKVGSI 228
[Close]
BLAST of FC872849 vs. ExPASy Swiss-Prot
Match: RL2_PICTO (50S ribosomal protein L2P OS=Picrophilus torridus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:   37 VRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 150
            VRGVAMN V HPHGGGNHQH+G  STV R  PPG+KVG
Sbjct:  184 VRGVAMNAVNHPHGGGNHQHVGRPSTVGRGTPPGRKVG 221
[Close]
BLAST of FC872849 vs. ExPASy Swiss-Prot
Match: RL2_CENSY (50S ribosomal protein L2P OS=Cenarchaeum symbiosum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    4 KFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 156
            +FR K   +P VRGVA     HPHGGG HQH+G +STV R+APPG KVG I
Sbjct:  179 RFRSKGRKYPIVRGVAQAAYVHPHGGGRHQHVGQSSTVSRNAPPGAKVGSI 229
[Close]
BLAST of FC872849 vs. ExPASy Swiss-Prot
Match: RL2_METKA (50S ribosomal protein L2P OS=Methanopyrus kandleri GN=rpl2p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.691e-11
Identity = 31/49 (63.27%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:   10 RVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 156
            R K   WPKVRGVAMN V+HP GGGNHQ  G  +T+ R  PPG+KVG I
Sbjct:  184 RSKGGKWPKVRGVAMNAVDHPFGGGNHQSPGKPTTIARGDPPGRKVGHI 232
The following BLAST results are available for this feature:
BLAST of FC872849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RL2_METTP5.095e-1160.7850S ribosomal protein L2P OS=Methanosaeta thermoph... [more]
RL2_PICTO6.655e-1176.3250S ribosomal protein L2P OS=Picrophilus torridus ... [more]
RL2_CENSY6.655e-1160.7850S ribosomal protein L2P OS=Cenarchaeum symbiosum... [more]
RL2_METKA8.691e-1163.2750S ribosomal protein L2P OS=Methanopyrus kandleri... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2AB07ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2AB07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872849 ID=FC872849; Name=FC872849; organism=Citrus clementina; type=EST; length=714bp
GGGAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTGCGTGGTGTGGC
CATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGCACATTG
GTCATGCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCCAGAAGGTTGGT
CTTATTGCAGCCAGGAGGACTGGTCGGCTCAGAGGACAAGCTGCTGCCAC
TGCAGCCAAGGCCGACAAGGCTTAAATCCTTTGTGTTACCACAAATCGTC
TCTCTATCGCGATCTGTCATTTTACTTTTCCTGCTGCATCATTACCTTGG
AAAAATTTGTTGAGATTTGGATCTCTGGGATGATCCTGATGTTAAATTAT
GTTGGCTTAAAGTTTAGCTTAATTTGCTCTTATCCTAAACTTTAGTTGAT
TTTGATATTTTTGGATATATTAATGGATGCCTTCATCGAATTAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAATTTGGGGCCCCCCCCCCCCCATCAAACTTAA
AACCAAAAAAATTTTTTGGGGGGGCCCCAATTTAAACCCCTTTGGGCAAT
TTCCCCCAAAGGGGGGTTAAAAAAAATTTCCGGGGCCCTTTTTTAAAACC
CCCGGGGGGGGAAA
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