FC872866

Overview
NameFC872866
Unique NameFC872866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length553
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872866 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 7.443e-42
Identity = 75/121 (61.98%), Postives = 90/121 (74.38%), Query Frame = 3
Query:    6 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 368
            N NY   G A+GVDLL+NPDL+ATD  +SFK+A+WFWMT Q  KPS H+VI   W PS  +  AGR PGYG+ TNI+NGG+ECG G +D V NRIGF+  +CG FGI  G NLDCYNQRP+
Sbjct:  209 NFNYGPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDCYNQRPF 329          
BLAST of FC872866 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 9.721e-42
Identity = 74/120 (61.67%), Postives = 92/120 (76.67%), Query Frame = 3
Query:   12 NYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYG 371
            NY + G A+G +L+NNPDL+ATD  +SFK+AIWFWMT Q  KPS H+VII  W PSA +  A R+PGYG+ TNIINGGIECG G NDAV +RIG++  +CG   + PG+NLDCYNQR +G
Sbjct:  132 NYEKAGTAIGQELVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGRWTPSAADQAANRVPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNVAPGENLDCYNQRNFG 251          
BLAST of FC872866 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.166e-41
Identity = 74/122 (60.66%), Postives = 92/122 (75.41%), Query Frame = 3
Query:    3 GNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 368
            G  NY   G+A+G DL+NNPDL+ATD  +SFK+AIWFWMTAQ  KPSCH+VI  +W PSA + +A R PGYG+ TNIINGGIECG+G N  V +RIGF+  +C    + PGDNLDCY+QR +
Sbjct:  123 GQSNYDLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLDCYDQRNF 244          
BLAST of FC872866 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.828e-41
Identity = 74/130 (56.92%), Postives = 97/130 (74.62%), Query Frame = 3
Query:    6 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 395
            N NY + G+A+GVDL+NNPDL+ATD V+SFK+A WFWMT Q PKPSCH VI   W PS  + +AGRLPG+G+ TNIINGG+ECG+G    V++RIGF+  +C    +  G+NLDC NQRP+G  L+  ++
Sbjct:  185 NYNYGQAGKAIGVDLVNNPDLVATDAVISFKTAFWFWMTPQSPKPSCHNVITGGWTPSGADRSAGRLPGFGVITNIINGGVECGKGVVPQVQDRIGFYKRYCDILRVSYGNNLDCNNQRPFGSGLLLDTI 314          
BLAST of FC872866 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 3.694e-41
Identity = 74/121 (61.16%), Postives = 90/121 (74.38%), Query Frame = 3
Query:    6 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 368
            N NY   G A+GVDLL NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  +  AGR PG+G+ TNIINGG+ECG G +  V +RIGF+  +C   G+  GDNLDCYNQRP+
Sbjct:  145 NYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSPSGADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVGYGDNLDCYNQRPF 265          
BLAST of FC872866 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 4.825e-41
Identity = 75/122 (61.48%), Postives = 91/122 (74.59%), Query Frame = 3
Query:    3 GNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 368
            G  NY   G ALG+DL+ NPDL++TD V+SFK+AIWFWMTAQ  KPSCH+VI+  W PSA +  AGR+PGYG+ TNIINGGIECG G NDA  +RIG++  +C   G   G NLDCYNQR +
Sbjct:  138 GQSNYQAAGNALGLDLVGNPDLVSTDAVVSFKTAIWFWMTAQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQNDANVDRIGYYKRYCDMLGAGYGSNLDCYNQRNF 259          
BLAST of FC872866 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.075e-40
Identity = 72/122 (59.02%), Postives = 90/122 (73.77%), Query Frame = 3
Query:    6 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYG 371
            N NY   G A+GV+LLNNPDL+A D V+SFK+A+WFWMTAQ PKPS H+VI   W PS  +   GR+PG+G+ TNIINGG+EC  G N  + NRIGF+  +C   G+ PG+NLDC NQRP+G
Sbjct:  125 NYNYGAAGSAIGVNLLNNPDLVANDAVVSFKTALWFWMTAQQPKPSAHDVITGRWSPSVADSAPGRVPGFGVITNIINGGMECNSGSNALMDNRIGFYRRYCQILGVDPGNNLDCANQRPFG 246          
BLAST of FC872866 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.075e-40
Identity = 76/126 (60.32%), Postives = 90/126 (71.43%), Query Frame = 3
Query:    6 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGG-NDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNL 380
            N NY  CG+ L + LL  P+L+ TDPV+SFK+AIWFWM  Q PKPSCH VI   W PSA ++ AGR+PGYG+ TNIINGGIECGQGG N A  +RIGF+  +C   G   G NLDCY QRP+G  L
Sbjct:  208 NYNYGLCGDDLKLPLLQEPELVETDPVISFKTAIWFWMKPQSPKPSCHAVITGNWTPSAADLEAGRVPGYGVITNIINGGIECGQGGPNAANEDRIGFYKKYCDSLGTTYGSNLDCYQQRPFGYGL 333          
BLAST of FC872866 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 164.851 bits (416), Expect = 2.394e-40
Identity = 72/121 (59.50%), Postives = 91/121 (75.21%), Query Frame = 3
Query:    6 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 368
            N NY   G A+GVDLL NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  +  AGR+PG+G+ TNI+NGGIECG G +  V +RIGF+  +C   G+  G+NLDCY+QRP+
Sbjct:  197 NYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 317          
BLAST of FC872866 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 4.084e-40
Identity = 73/121 (60.33%), Postives = 90/121 (74.38%), Query Frame = 3
Query:    6 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 368
            N NY   G A+GVDLL NPDL+ATD  + FK+AIWFWMTAQPPKPS H VI  +W PS  +  AGR+PG+G+ TNIINGGIECG G +  V +RIGF+  +C   G+  G+NLDCY+QRP+
Sbjct:  145 NYNYGPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPSSHAVIAGQWSPSGADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 265          
The following BLAST results are available for this feature:
BLAST of FC872866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI2_ORYSJ7.443e-4261.98Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIQ_TOBAC9.721e-4261.67Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHIB_SOLLC2.166e-4160.66Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIB_VITVI2.828e-4156.92Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHIC_SECCE3.694e-4161.16Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI8_ORYSJ4.825e-4161.48Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHID_SOLLC1.075e-4059.02Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI6_POPTR1.075e-4060.32Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHI1_HORVU2.394e-4059.5026 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHI2_HORVU4.084e-4060.3326 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DA06ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3DA06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872866 ID=FC872866; Name=FC872866; organism=Citrus clementina; type=EST; length=553bp
GGGGGAATTGCAATTACTTAAGGTGCGGAGAAGCCTTGGGGGTGGACTTG
TTGAACAATCCAGACCTTCTTGCCACTGATCCAGTACTATCATTCAAGTC
AGCAATCTGGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACG
AAGTCATTATCGACGAATGGAAACCATCAGCAATTGAAGTAAACGCCGGC
CGGCTTCCGGGATACGGTCTAACCACAAATATAATCAACGGTGGAATTGA
ATGTGGCCAAGGTGGGAATGACGCTGTACGCAACCGTATTGGGTTCTTTA
CCACTTTCTGTGGCAAGTTTGGGATTCAGCCTGGTGACAATCTTGATTGC
TACAACCAACGGCCTTATGGCCTTAATCTGATGGCACAATCTATGTGATC
ATCATGATCAAGGTTTTAGTAAAATAAGCTTAATAAAAGCTACTTAATAA
AAACTTTAGATGTCACAGTTGTAGGTGGACAACTAAATTATTCGTTTGTT
ACGCTCTTATTGCAAGTAATTTAAATAAGACTGATCCAACATGGATCAAT
GAG
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