FC872866

Overview
NameFC872866
Unique NameFC872866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length553
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872866 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 5.334e-40
Identity = 72/121 (59.50%), Postives = 90/121 (74.38%), Query Frame = 3
Query:    6 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 368
            N NY   G A+GVDLL NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  +  AGR+PG+G+ TNI+NGGIECG G +  V +RIGF+  +C    +  G+NLDCYNQRP+
Sbjct:  200 NYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILRVGYGNNLDCYNQRPF 320          
BLAST of FC872866 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 6.967e-40
Identity = 71/121 (58.68%), Postives = 91/121 (75.21%), Query Frame = 3
Query:   12 NYLRCGEALGV--DLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 368
            NY R G+ +GV  DL+NNPDL+ATDP++SF++AIWFWMTAQ  KPSCH VII +W PS  +  A R+PGYG+ TNIINGG+EC  G N AV +RIGF+  +CG   +  G+NLDC NQ+ +
Sbjct:  130 NYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of FC872866 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.188e-39
Identity = 68/121 (56.20%), Postives = 96/121 (79.34%), Query Frame = 3
Query:   12 NYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQG-GNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYG 371
            NY   G+ALG+DL+NNPDL+++DPV++F++AIWFWMTAQ PKPSCH+VI ++W PS  + ++GRLPGYG+ TNIINGG ECG+G   D  ++R+G++  +C  F +  GDN+ C +Q+PYG
Sbjct:  134 NYQLAGDALGLDLVNNPDLVSSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDRSSGRLPGYGMATNIINGGEECGKGYSTDNAKDRVGYYKRYCDMFRVGYGDNIACRDQKPYG 254          
BLAST of FC872866 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.027e-39
Identity = 72/119 (60.50%), Postives = 88/119 (73.95%), Query Frame = 3
Query:   12 NYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 368
            NY + G A+  DL+NNPDL+ATD  +SFK+AIWFWMT Q  KPS H+VII  W PSA + +A R PG G+ TNIINGGIECG G N AV +RIG++  +CG   + PGDNLDCYNQR +
Sbjct:  132 NYEKAGNAIRQDLVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNVAPGDNLDCYNQRNF 250          
BLAST of FC872866 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.647e-39
Identity = 71/121 (58.68%), Postives = 91/121 (75.21%), Query Frame = 3
Query:    6 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 368
            N NY   G+A+  DL+NNPDLL+T+P +SFK+AIWFWMT Q  KPS H+VI   W PSA + +AGR+PGYG+ TNIINGGIECG G ++ V +R+GF+  +C  FG+ PG NLDC NQR +
Sbjct:  199 NYNYGLAGQAIKEDLINNPDLLSTNPTVSFKTAIWFWMTPQANKPSSHDVITGRWTPSAADSSAGRVPGYGVITNIINGGIECGHGQDNRVDDRVGFYKRYCQIFGVDPGGNLDCNNQRSF 319          
BLAST of FC872866 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 4.516e-39
Identity = 70/103 (67.96%), Postives = 85/103 (82.52%), Query Frame = 3
Query:    6 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCG 314
            N NY  CG A+GVDLLNNPDL+ATDPV+SFKSAIWFWMT Q PKPSCH+VII  W+PSA +  A RLPG+G+ TNIINGG+ECG+G +  V++RIGF+  +CG
Sbjct:  199 NYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVIIGRWQPSAADRAANRLPGFGVITNIINGGLECGRGSDSRVQDRIGFYRRYCG 301          
BLAST of FC872866 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 4.516e-39
Identity = 68/121 (56.20%), Postives = 89/121 (73.55%), Query Frame = 3
Query:    6 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 368
            N NY   G+A+G +LL+NPDL+A+D  +SFK+A WFWMT Q PKPSCH V+  +W P+  +  AGR+PGYG+ TNIINGG+ECG G +  V +RIGF+  +C   G+  G NLDCYNQRP+
Sbjct:  201 NYNYGPAGQAIGSNLLSNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVMTGQWTPNGNDQAAGRVPGYGVVTNIINGGVECGHGADSRVADRIGFYKRYCDMLGVSYGANLDCYNQRPF 321          
BLAST of FC872866 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.241e-38
Identity = 71/122 (58.20%), Postives = 88/122 (72.13%), Query Frame = 3
Query:    3 GNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 368
            G  NY   G+A+  DL+NNPDL+ATD  +SFK+AIWFWMT Q  KPSCH+VI   W PSA + +A R+PGYG+ TNIINGGIECG+G N  V +RIG++        + PGDNLDCYNQR +
Sbjct:  130 GQSNYDLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYYRRNVSIMNVAPGDNLDCYNQRNF 251          
BLAST of FC872866 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 2.241e-38
Identity = 69/122 (56.56%), Postives = 88/122 (72.13%), Query Frame = 3
Query:    6 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYG 371
            N NY   G+A+G DLL +PDL+A+D  +SF +A WFWMT Q PKPSCH V   +W PSA +  AGR+PGYG+ TNIINGG+ECG G +D V +RIGF+  +C   G+    NLDCY+QRP+G
Sbjct:  204 NFNYGPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTPQSPKPSCHAVATGQWTPSADDQAAGRVPGYGVITNIINGGLECGHGEDDRVADRIGFYKRYCDILGVSYDANLDCYSQRPFG 325          
BLAST of FC872866 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.993e-38
Identity = 69/121 (57.02%), Postives = 88/121 (72.73%), Query Frame = 3
Query:   12 NYLRCGEALGV--DLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 368
            NY R G+ +GV  +L+NNPDL+ATDP++SFK+AIWFWMT Q  KPSCH VII +W PS  +  A R+PGYG+ TNIING  ECG G N A  +RIGF+  +CG   +  G+NLDC NQ+ +
Sbjct:  130 NYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
The following BLAST results are available for this feature:
BLAST of FC872866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIA_SECCE5.334e-4059.50Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHIA_SOLCI6.967e-4058.68Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHI11_ORYSJ1.188e-3956.20Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIP_TOBAC2.027e-3960.50Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHIX_PEA2.647e-3958.68Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI4_SOLTU4.516e-3967.96Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHI1_ORYSJ4.516e-3956.20Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_PETHY2.241e-3858.20Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHI12_ORYSJ2.241e-3856.56Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIA_SOLLC4.993e-3857.02Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DA06ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3DA06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872866 ID=FC872866; Name=FC872866; organism=Citrus clementina; type=EST; length=553bp
GGGGGAATTGCAATTACTTAAGGTGCGGAGAAGCCTTGGGGGTGGACTTG
TTGAACAATCCAGACCTTCTTGCCACTGATCCAGTACTATCATTCAAGTC
AGCAATCTGGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACG
AAGTCATTATCGACGAATGGAAACCATCAGCAATTGAAGTAAACGCCGGC
CGGCTTCCGGGATACGGTCTAACCACAAATATAATCAACGGTGGAATTGA
ATGTGGCCAAGGTGGGAATGACGCTGTACGCAACCGTATTGGGTTCTTTA
CCACTTTCTGTGGCAAGTTTGGGATTCAGCCTGGTGACAATCTTGATTGC
TACAACCAACGGCCTTATGGCCTTAATCTGATGGCACAATCTATGTGATC
ATCATGATCAAGGTTTTAGTAAAATAAGCTTAATAAAAGCTACTTAATAA
AAACTTTAGATGTCACAGTTGTAGGTGGACAACTAAATTATTCGTTTGTT
ACGCTCTTATTGCAAGTAATTTAAATAAGACTGATCCAACATGGATCAAT
GAG
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