FC872866

Overview
NameFC872866
Unique NameFC872866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length553
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872866 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 9.744e-34
Identity = 64/121 (52.89%), Postives = 84/121 (69.42%), Query Frame = 3
Query:    6 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 368
            N NY   G+A+GVDLL NPDL+ +D  + FK+A+WFWMT Q PKPS H+VI   W PS+ +  AGR+PGYG+ TNII+GG+ECG+G    V +RIG++            DNLDCYNQ+P+
Sbjct:   90 NYNYGAAGKAIGVDLLRNPDLVTSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECGKGQESHVADRIGYYK-----------DNLDCYNQKPF 199          
BLAST of FC872866 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.400e-32
Identity = 62/130 (47.69%), Postives = 88/130 (67.69%), Query Frame = 3
Query:    6 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQ-PPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQS 392
            N NY   GEA+G DLL NP+L+ATDP ++FK+A+W WMTA+ P +PS H V+  +W P+  +  AGR PGYGLTTNI+ GG++C  G   A  +R+ F+  +C   G+  G NLDC+ Q P+  ++M+ S
Sbjct:  210 NYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGDIMSAS 337          
BLAST of FC872866 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.135e-32
Identity = 62/130 (47.69%), Postives = 87/130 (66.92%), Query Frame = 3
Query:    6 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQ-PPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQS 392
            N NY   GEA+G DLL NP+L+ATDP ++FK+A+W WMTA+ P +PS H V+  +W P+  +  AGR PGYGLTTNI+ GG++C  G   A  +R+ F+  +C   G+  G NLDC+ Q P+   +M+ S
Sbjct:  210 NYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGGIMSAS 337          
BLAST of FC872866 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.191e-31
Identity = 57/121 (47.11%), Postives = 84/121 (69.42%), Query Frame = 3
Query:    6 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 368
            N NY   G+ALG D L NP+++A    ++F++A+WFWMT +  KPSCH+V++ E++P   +V A R  G+GL TNI+NGG+EC + G+  V NRIGF+  +C   G+  G NLDC +Q+P+
Sbjct:  170 NFNYGPAGQALGFDGLRNPEIVANCSDIAFQTALWFWMTPRDTKPSCHQVMVGEYRPGPADVAANRTAGFGLVTNIVNGGLECNRAGDARVNNRIGFYRRYCQVLGVDVGPNLDCEHQQPF 290          
BLAST of FC872866 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.317e-30
Identity = 60/122 (49.18%), Postives = 78/122 (63.93%), Query Frame = 3
Query:    6 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 368
            N NY  CG  LG +LL+ P+ +ATDPVLSF++A+WFWM       PSCHEVI  EW PS  ++ AGR PG+G+ TNII  G EC + G    +NRI ++  +C    + PGDNL C NQ  +
Sbjct:  183 NYNYGECGNYLGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDMLQVDPGDNLYCDNQETF 304          
BLAST of FC872866 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.789e-18
Identity = 46/115 (40.00%), Postives = 60/115 (52.17%), Query Frame = 3
Query:    6 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 350
            N NY   G+A+G D L NP+ +ATD   SFK+A+WFWMT      + H V+                 G+G TT  ING +EC     D   +RI F+  +C  FG+ PGDNL C
Sbjct:  195 NYNYALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMT------NVHSVMNQ---------------GFGATTKAINGALECNGQNQDQANDRIQFYKKYCADFGVAPGDNLTC 288          
BLAST of FC872866 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 3.720e-17
Identity = 46/116 (39.66%), Postives = 69/116 (59.48%), Query Frame = 3
Query:    6 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGND--AVR-NRIGFFTTFCGKFGIQPGDNL 344
            N NY   G+A+G DL+ NPDL+  DP++SFK+A+WFWM+    KPSCH+++++          A R+P  G+  NII+        G+D  AVR + IGF+  +C   G+  G +L
Sbjct:  247 NFNYGLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIVLN------ANSAANRIPNKGVIGNIISRAF-----GHDDFAVRSSSIGFYKRYCDMLGVSYGHDL 351          
BLAST of FC872866 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 5.372e-16
Identity = 41/115 (35.65%), Postives = 64/115 (55.65%), Query Frame = 3
Query:    6 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 350
            N NY+  G+ L  D LN+PD++  DP++SFK+++WFW+     +     VI+D   P+          G+G T  IINGG EC       +  R+G++  +C + G+ PG+NL C
Sbjct:  153 NYNYIDAGKELHFDGLNDPDIVGRDPIISFKTSLWFWI-----RKGVQYVILD---PN---------QGFGATIRIINGGQECDGHNTAQMMARVGYYQEYCAQLGVSPGNNLPC 250          
BLAST of FC872866 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.015e-16
Identity = 42/115 (36.52%), Postives = 60/115 (52.17%), Query Frame = 3
Query:    6 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 350
            N NY   G+ +G D L +PD +A DP +SFK+A+WFWM       + H+V+               L G+G T   ING +EC      AV  R+ ++  +C +FG+ PG NL C
Sbjct:  195 NYNYGPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWMN------NVHQVM---------------LQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVDPGGNLYC 288          
BLAST of FC872866 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.482e-15
Identity = 39/115 (33.91%), Postives = 59/115 (51.30%), Query Frame = 3
Query:    6 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 350
            N NY   G+++G D L +PD +A  PVL+F++A+W+W        + H+  +                G+G T   ING +EC      AV NR+ ++  FC +FG+ PG NL C
Sbjct:  176 NFNYGPAGQSIGFDGLGDPDAVARSPVLAFQTALWYWTN------NVHDAFVSG-------------QGFGATIRAINGALECDGKNPTAVSNRVAYYQQFCQQFGVDPGSNLTC 271          
The following BLAST results are available for this feature:
BLAST of FC872866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIT_AVESA9.744e-3452.89Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHI7_ORYSJ2.400e-3247.69Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI3.135e-3247.69Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHI10_ORYSJ1.191e-3147.11Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI8_POPTR1.317e-3049.18Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHIP_BETVU9.789e-1840.00Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
AGI_URTDI3.720e-1739.66Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHIT_DIOJA5.372e-1635.65Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI5_ORYSJ7.015e-1636.52Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI6_ORYSJ3.482e-1533.91Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DA06ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3DA06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872866 ID=FC872866; Name=FC872866; organism=Citrus clementina; type=EST; length=553bp
GGGGGAATTGCAATTACTTAAGGTGCGGAGAAGCCTTGGGGGTGGACTTG
TTGAACAATCCAGACCTTCTTGCCACTGATCCAGTACTATCATTCAAGTC
AGCAATCTGGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACG
AAGTCATTATCGACGAATGGAAACCATCAGCAATTGAAGTAAACGCCGGC
CGGCTTCCGGGATACGGTCTAACCACAAATATAATCAACGGTGGAATTGA
ATGTGGCCAAGGTGGGAATGACGCTGTACGCAACCGTATTGGGTTCTTTA
CCACTTTCTGTGGCAAGTTTGGGATTCAGCCTGGTGACAATCTTGATTGC
TACAACCAACGGCCTTATGGCCTTAATCTGATGGCACAATCTATGTGATC
ATCATGATCAAGGTTTTAGTAAAATAAGCTTAATAAAAGCTACTTAATAA
AAACTTTAGATGTCACAGTTGTAGGTGGACAACTAAATTATTCGTTTGTT
ACGCTCTTATTGCAAGTAATTTAAATAAGACTGATCCAACATGGATCAAT
GAG
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