FC872866

Overview
NameFC872866
Unique NameFC872866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length553
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872866 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 3.482e-15
Identity = 41/115 (35.65%), Postives = 59/115 (51.30%), Query Frame = 3
Query:    6 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 350
            N NY   G+ +G D L +PD +A DP +SFK+A+WFWM       + H+V+                 G+G T   ING +EC      AV  R+ ++  +C +FG+ PG NL C
Sbjct:  192 NFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWMN------NVHQVMSQ---------------GFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVSPGGNLYC 285          
BLAST of FC872866 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 3.482e-15
Identity = 38/115 (33.04%), Postives = 65/115 (56.52%), Query Frame = 3
Query:    6 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 350
            N NY  CG++L ++LL  P+L++++P ++F++ +WFWM +  P       ++++              G+G T   IN G+EC  G + AV  RI ++  +CG+ G+ PG NL C
Sbjct:  176 NYNYGACGQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRP-------VLNQ--------------GFGATIRAIN-GMECNGGNSGAVNARIRYYRDYCGQLGVDPGPNLSC 268          
BLAST of FC872866 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.256e-13
Identity = 42/116 (36.21%), Postives = 59/116 (50.86%), Query Frame = 3
Query:    6 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRN-RIGFFTTFCGKFGIQPGDNLDC 350
            N NY   G A+G D L +P  +A D V++FK+A+WFWM       S H V+                 G+G TT  +   +ECG G N A  N R+G++  +C + G+ PG NL C
Sbjct:  176 NYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMN------SVHGVVPQ---------------GFGATTRAMQRALECG-GNNPAQMNARVGYYRQYCRQLGVDPGPNLTC 269          
BLAST of FC872866 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.146e-12
Identity = 37/115 (32.17%), Postives = 56/115 (48.70%), Query Frame = 3
Query:    6 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDC 350
            N NY   G A   D L  P+ ++ D V+SFK+A+W+WM    P       +I++              G+G T   ING +EC       V+ R+ ++T +C + G+  GDNL C
Sbjct:  177 NFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWMQHVRP-------VINQ--------------GFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGVATGDNLTC 270          
BLAST of FC872866 vs. ExPASy Swiss-Prot
Match: CHI4_ARAHY (Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.984e-11
Identity = 28/46 (60.87%), Postives = 36/46 (78.26%), Query Frame = 3
Query:  117 MTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIEC 254
            MT Q  KPSCH+VI + W+P+A +  AGR PGYG+ TNIINGG++C
Sbjct:    1 MTPQGNKPSCHDVITNAWRPTATDSAAGRAPGYGVITNIINGGLDC 46          
BLAST of FC872866 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.875e-11
Identity = 38/116 (32.76%), Postives = 56/116 (48.28%), Query Frame = 3
Query:    6 NCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRN-RIGFFTTFCGKFGIQPGDNLDC 350
            N NY   G  +G + L +P+ +A D V++FK+A+WFWM                       V+     G+G T   ING +EC  G N A  N R+G++  +C +  + PG NL C
Sbjct:  187 NYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWMN---------------------NVHGVMPQGFGATIRAINGALEC-NGNNPAQMNARVGYYKQYCQQLRVDPGPNLIC 280          
The following BLAST results are available for this feature:
BLAST of FC872866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI4_ORYSJ3.482e-1535.65Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_BRANA3.482e-1533.04Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHIB_MAIZE4.256e-1336.21Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHI4_PHAVU6.146e-1232.17Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHI4_ARAHY3.984e-1160.87Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=... [more]
CHIA_MAIZE8.875e-1132.76Endochitinase A OS=Zea mays PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DA06ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3DA06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872866 ID=FC872866; Name=FC872866; organism=Citrus clementina; type=EST; length=553bp
GGGGGAATTGCAATTACTTAAGGTGCGGAGAAGCCTTGGGGGTGGACTTG
TTGAACAATCCAGACCTTCTTGCCACTGATCCAGTACTATCATTCAAGTC
AGCAATCTGGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACG
AAGTCATTATCGACGAATGGAAACCATCAGCAATTGAAGTAAACGCCGGC
CGGCTTCCGGGATACGGTCTAACCACAAATATAATCAACGGTGGAATTGA
ATGTGGCCAAGGTGGGAATGACGCTGTACGCAACCGTATTGGGTTCTTTA
CCACTTTCTGTGGCAAGTTTGGGATTCAGCCTGGTGACAATCTTGATTGC
TACAACCAACGGCCTTATGGCCTTAATCTGATGGCACAATCTATGTGATC
ATCATGATCAAGGTTTTAGTAAAATAAGCTTAATAAAAGCTACTTAATAA
AAACTTTAGATGTCACAGTTGTAGGTGGACAACTAAATTATTCGTTTGTT
ACGCTCTTATTGCAAGTAATTTAAATAAGACTGATCCAACATGGATCAAT
GAG
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