FC872870
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB1_STRAW (Chaperone protein clpB 1 OS=Streptomyces avermitilis GN=clpB1 PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.991e-23 Identity = 50/115 (43.48%), Postives = 80/115 (69.57%), Query Frame = 3 Query: 3 VDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFSNG 347 ++ R+ F+PEF+NR+D+ +VF L+R ++ I +LQ+DR+ +R+A R+++++VTDAA+ L G DP YG RP++R++Q + + LAK IL GE KD DT+ +D AF G Sbjct: 749 LEVVRASFKPEFLNRLDDLVVFSALNRQELERIAKLQIDRLAQRLAQRRLRLEVTDAALAWLAEEGNDPAYGARPLRRLVQTAIGDRLAKEILAGEVKDGDTVRVD----AFGEG 859
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_XYLFA (Chaperone protein clpB OS=Xylella fastidiosa GN=clpB PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.601e-23 Identity = 48/108 (44.44%), Postives = 77/108 (71.30%), Query Frame = 3 Query: 3 VDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 326 ++ ++ FRPEF+NR+D+ +VF PLD+ QI I R+QL ++KR+A+ ++K+ + D A++LLG++G+DP YG RP+KR IQ +EN LA+ IL F DT+ + + Sbjct: 745 MEVVQAHFRPEFINRLDDIVVFHPLDKAQIKQIARIQLQGLEKRLAESELKLDLDDRALELLGNVGFDPVYGARPLKRAIQSQLENPLAQQILAEAFVSGDTVQVGVD 852
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_VIBCH (Chaperone protein clpB OS=Vibrio cholerae GN=clpB PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 3.396e-23 Identity = 51/108 (47.22%), Postives = 74/108 (68.52%), Query Frame = 3 Query: 3 VDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 326 +D FRPEF+NRVDE +VF PL ++ I SI +QL R+++R+A+R +++V D A+ L+ +G+DP YG RP+KR IQQ VEN LAK IL G+F I++ + Sbjct: 742 MDVVSKHFRPEFLNRVDESVVFHPLGQEHIKSIASIQLARLRQRLAERDYQLEVDDEALDLIAHVGFDPVYGARPLKRAIQQNVENPLAKSILAGKFLPGSPILLSVK 849
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB1_ANASP (Chaperone protein clpB 1 OS=Anabaena sp. (strain PCC 7120) GN=clpB1 PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 3.396e-23 Identity = 54/113 (47.79%), Postives = 73/113 (64.60%), Query Frame = 3 Query: 3 VDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFS 341 +DA RS FRPEF+NRVD+ I+F L R ++S I+R+QL RV+ + D+K+ +++ AA L GYDP YG RP+KR IQ+ +EN LA IL F DTI ID + S Sbjct: 752 MDALRSHFRPEFLNRVDDTILFHALSRSEMSHIIRIQLKRVESLLRDQKISFEISPAACDFLVEKGYDPVYGARPLKRAIQREIENPLATKILENTFISGDTIYIDQDENGLS 864
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_VIBPA (Chaperone protein clpB OS=Vibrio parahaemolyticus GN=clpB PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 4.436e-23 Identity = 53/114 (46.49%), Postives = 76/114 (66.67%), Query Frame = 3 Query: 3 VDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEF---KDEDTIVIDTEVTA 335 +D FRPEF+NRVDE +VF PL ++ I SI +QL+R+ KR+ ++ +++V+D A+ L+ +G+DP YG RP+KR IQQ VEN LAK IL GE K IV + ++ A Sbjct: 742 MDVVSKHFRPEFLNRVDEIVVFHPLGQEHIKSIASIQLERLAKRLEEKGYQLEVSDKALDLIAQVGFDPVYGARPLKRAIQQNVENPLAKSILAGEIVPDKKVQLIVTNDQILA 855
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_RHOBA (Chaperone protein clpB OS=Rhodopirellula baltica GN=clpB PE=3 SV=2) HSP 1 Score: 107.457 bits (267), Expect = 5.794e-23 Identity = 50/111 (45.05%), Postives = 75/111 (67.57%), Query Frame = 3 Query: 6 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAF 338 DA ++ F PEF+NR+D+ ++F PL + QI IV+LQL+ ++ R+A + ++TDAAI + +GYDP YG RP+KRVIQ+ V+N LA IL+ + + TI ID + F Sbjct: 767 DALKARFLPEFLNRIDDTVIFHPLQQTQIRRIVQLQLEELRSRLAANGLSFEITDAAIDQIAEVGYDPAYGARPLKRVIQREVQNPLASAILKNSYAEGTTIKIDHDGDQF 877
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_PSEAE (Chaperone protein clpB OS=Pseudomonas aeruginosa GN=clpB PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 5.794e-23 Identity = 47/97 (48.45%), Postives = 76/97 (78.35%), Query Frame = 3 Query: 3 VDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEF 293 +DA + FRPEF+NR+DE +VF+PL R+QI+ I +QL R++KR+A+R++ ++++ A+ L ++G+DP YG RP+KR IQ+++EN LA+ IL G+F Sbjct: 740 MDAVNAHFRPEFINRIDEVVVFEPLAREQIAGIAEIQLGRLRKRLAERELSLELSQEALDKLIAVGFDPVYGARPLKRAIQRWIENPLAQLILAGKF 836
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_PROMM (Chaperone protein clpB OS=Prochlorococcus marinus (strain MIT 9313) GN=clpB PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 5.794e-23 Identity = 52/124 (41.94%), Postives = 81/124 (65.32%), Query Frame = 3 Query: 6 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFSNGQLPQQKLVFR 377 DA + FRPEF+NR+DE I+F L R+++ IV LQ++R+++R+ DRK+ ++++D A L + GYDP YG RP+KR IQ+ +E +AK IL G + D + +D +V Q++L FR Sbjct: 750 DALHAHFRPEFLNRLDETIIFHSLRREELRQIVALQVNRLRERLCDRKLGLEISDTAADWLANAGYDPVYGARPLKRAIQRELETPIAKSILAGLYGDSQIVHVDVDV--------DQERLSFR 865
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_BRAJA (Chaperone protein clpB OS=Bradyrhizobium japonicum GN=clpB PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 9.882e-23 Identity = 54/116 (46.55%), Postives = 77/116 (66.38%), Query Frame = 3 Query: 15 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFS-NGQLPQ 359 R FRPEF+NRVDE I+F L R ++ IV +Q R+QK + DRK+ + + AA L + G+DP YG RP+KRVIQ+Y+++ LA+ IL G+ KD D + I +E + NG+ PQ Sbjct: 747 RGHFRPEFLNRVDEIILFHRLQRSEMGRIVEIQFARLQKLLTDRKIVLTLDGAARDWLAAKGWDPAYGARPLKRVIQRYLQDPLAEMILAGDVKDGDNVAISSEGNVLTFNGKAPQ 862
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_RHIME (Chaperone protein clpB OS=Rhizobium meliloti GN=clpB PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.291e-22 Identity = 49/105 (46.67%), Postives = 75/105 (71.43%), Query Frame = 3 Query: 3 VDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVI 317 ++ R+ FRPEF+NRVDE I+F L R ++ +IV +QL+R++K ++DRK+ +++ D A L GYDP YG RP+KR IQ+YV++ LA+ +L+GEF D I + Sbjct: 744 MEVVRAAFRPEFLNRVDEIILFHRLRRSEMGAIVDIQLERLRKLLSDRKITLELEDDARVFLADRGYDPAYGARPLKRAIQKYVQDPLAEKVLQGEFPDGSVIKV 848 The following BLAST results are available for this feature:
BLAST of FC872870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 175
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Sequences
The
following sequences are available for this feature:
EST sequence >FC872870 ID=FC872870; Name=FC872870; organism=Citrus clementina; type=EST; length=620bpback to top |