FC872870

Overview
NameFC872870
Unique NameFC872870
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB1_STRAW (Chaperone protein clpB 1 OS=Streptomyces avermitilis GN=clpB1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.991e-23
Identity = 50/115 (43.48%), Postives = 80/115 (69.57%), Query Frame = 3
Query:    3 VDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFSNG 347
            ++  R+ F+PEF+NR+D+ +VF  L+R ++  I +LQ+DR+ +R+A R+++++VTDAA+  L   G DP YG RP++R++Q  + + LAK IL GE KD DT+ +D    AF  G
Sbjct:  749 LEVVRASFKPEFLNRLDDLVVFSALNRQELERIAKLQIDRLAQRLAQRRLRLEVTDAALAWLAEEGNDPAYGARPLRRLVQTAIGDRLAKEILAGEVKDGDTVRVD----AFGEG 859          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_XYLFA (Chaperone protein clpB OS=Xylella fastidiosa GN=clpB PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.601e-23
Identity = 48/108 (44.44%), Postives = 77/108 (71.30%), Query Frame = 3
Query:    3 VDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 326
            ++  ++ FRPEF+NR+D+ +VF PLD+ QI  I R+QL  ++KR+A+ ++K+ + D A++LLG++G+DP YG RP+KR IQ  +EN LA+ IL   F   DT+ +  +
Sbjct:  745 MEVVQAHFRPEFINRLDDIVVFHPLDKAQIKQIARIQLQGLEKRLAESELKLDLDDRALELLGNVGFDPVYGARPLKRAIQSQLENPLAQQILAEAFVSGDTVQVGVD 852          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_VIBCH (Chaperone protein clpB OS=Vibrio cholerae GN=clpB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.396e-23
Identity = 51/108 (47.22%), Postives = 74/108 (68.52%), Query Frame = 3
Query:    3 VDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 326
            +D     FRPEF+NRVDE +VF PL ++ I SI  +QL R+++R+A+R  +++V D A+ L+  +G+DP YG RP+KR IQQ VEN LAK IL G+F     I++  +
Sbjct:  742 MDVVSKHFRPEFLNRVDESVVFHPLGQEHIKSIASIQLARLRQRLAERDYQLEVDDEALDLIAHVGFDPVYGARPLKRAIQQNVENPLAKSILAGKFLPGSPILLSVK 849          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB1_ANASP (Chaperone protein clpB 1 OS=Anabaena sp. (strain PCC 7120) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.396e-23
Identity = 54/113 (47.79%), Postives = 73/113 (64.60%), Query Frame = 3
Query:    3 VDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFS 341
            +DA RS FRPEF+NRVD+ I+F  L R ++S I+R+QL RV+  + D+K+  +++ AA   L   GYDP YG RP+KR IQ+ +EN LA  IL   F   DTI ID +    S
Sbjct:  752 MDALRSHFRPEFLNRVDDTILFHALSRSEMSHIIRIQLKRVESLLRDQKISFEISPAACDFLVEKGYDPVYGARPLKRAIQREIENPLATKILENTFISGDTIYIDQDENGLS 864          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_VIBPA (Chaperone protein clpB OS=Vibrio parahaemolyticus GN=clpB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.436e-23
Identity = 53/114 (46.49%), Postives = 76/114 (66.67%), Query Frame = 3
Query:    3 VDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEF---KDEDTIVIDTEVTA 335
            +D     FRPEF+NRVDE +VF PL ++ I SI  +QL+R+ KR+ ++  +++V+D A+ L+  +G+DP YG RP+KR IQQ VEN LAK IL GE    K    IV + ++ A
Sbjct:  742 MDVVSKHFRPEFLNRVDEIVVFHPLGQEHIKSIASIQLERLAKRLEEKGYQLEVSDKALDLIAQVGFDPVYGARPLKRAIQQNVENPLAKSILAGEIVPDKKVQLIVTNDQILA 855          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_RHOBA (Chaperone protein clpB OS=Rhodopirellula baltica GN=clpB PE=3 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 5.794e-23
Identity = 50/111 (45.05%), Postives = 75/111 (67.57%), Query Frame = 3
Query:    6 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAF 338
            DA ++ F PEF+NR+D+ ++F PL + QI  IV+LQL+ ++ R+A   +  ++TDAAI  +  +GYDP YG RP+KRVIQ+ V+N LA  IL+  + +  TI ID +   F
Sbjct:  767 DALKARFLPEFLNRIDDTVIFHPLQQTQIRRIVQLQLEELRSRLAANGLSFEITDAAIDQIAEVGYDPAYGARPLKRVIQREVQNPLASAILKNSYAEGTTIKIDHDGDQF 877          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_PSEAE (Chaperone protein clpB OS=Pseudomonas aeruginosa GN=clpB PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.794e-23
Identity = 47/97 (48.45%), Postives = 76/97 (78.35%), Query Frame = 3
Query:    3 VDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEF 293
            +DA  + FRPEF+NR+DE +VF+PL R+QI+ I  +QL R++KR+A+R++ ++++  A+  L ++G+DP YG RP+KR IQ+++EN LA+ IL G+F
Sbjct:  740 MDAVNAHFRPEFINRIDEVVVFEPLAREQIAGIAEIQLGRLRKRLAERELSLELSQEALDKLIAVGFDPVYGARPLKRAIQRWIENPLAQLILAGKF 836          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_PROMM (Chaperone protein clpB OS=Prochlorococcus marinus (strain MIT 9313) GN=clpB PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.794e-23
Identity = 52/124 (41.94%), Postives = 81/124 (65.32%), Query Frame = 3
Query:    6 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFSNGQLPQQKLVFR 377
            DA  + FRPEF+NR+DE I+F  L R+++  IV LQ++R+++R+ DRK+ ++++D A   L + GYDP YG RP+KR IQ+ +E  +AK IL G + D   + +D +V         Q++L FR
Sbjct:  750 DALHAHFRPEFLNRLDETIIFHSLRREELRQIVALQVNRLRERLCDRKLGLEISDTAADWLANAGYDPVYGARPLKRAIQRELETPIAKSILAGLYGDSQIVHVDVDV--------DQERLSFR 865          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_BRAJA (Chaperone protein clpB OS=Bradyrhizobium japonicum GN=clpB PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.882e-23
Identity = 54/116 (46.55%), Postives = 77/116 (66.38%), Query Frame = 3
Query:   15 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFS-NGQLPQ 359
            R  FRPEF+NRVDE I+F  L R ++  IV +Q  R+QK + DRK+ + +  AA   L + G+DP YG RP+KRVIQ+Y+++ LA+ IL G+ KD D + I +E    + NG+ PQ
Sbjct:  747 RGHFRPEFLNRVDEIILFHRLQRSEMGRIVEIQFARLQKLLTDRKIVLTLDGAARDWLAAKGWDPAYGARPLKRVIQRYLQDPLAEMILAGDVKDGDNVAISSEGNVLTFNGKAPQ 862          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_RHIME (Chaperone protein clpB OS=Rhizobium meliloti GN=clpB PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.291e-22
Identity = 49/105 (46.67%), Postives = 75/105 (71.43%), Query Frame = 3
Query:    3 VDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVI 317
            ++  R+ FRPEF+NRVDE I+F  L R ++ +IV +QL+R++K ++DRK+ +++ D A   L   GYDP YG RP+KR IQ+YV++ LA+ +L+GEF D   I +
Sbjct:  744 MEVVRAAFRPEFLNRVDEIILFHRLRRSEMGAIVDIQLERLRKLLSDRKITLELEDDARVFLADRGYDPAYGARPLKRAIQKYVQDPLAEKVLQGEFPDGSVIKV 848          
The following BLAST results are available for this feature:
BLAST of FC872870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
CLPB1_STRAW1.991e-2343.48Chaperone protein clpB 1 OS=Streptomyces avermitil... [more]
CLPB_XYLFA2.601e-2344.44Chaperone protein clpB OS=Xylella fastidiosa GN=cl... [more]
CLPB_VIBCH3.396e-2347.22Chaperone protein clpB OS=Vibrio cholerae GN=clpB ... [more]
CLPB1_ANASP3.396e-2347.79Chaperone protein clpB 1 OS=Anabaena sp. (strain P... [more]
CLPB_VIBPA4.436e-2346.49Chaperone protein clpB OS=Vibrio parahaemolyticus ... [more]
CLPB_RHOBA5.794e-2345.05Chaperone protein clpB OS=Rhodopirellula baltica G... [more]
CLPB_PSEAE5.794e-2348.45Chaperone protein clpB OS=Pseudomonas aeruginosa G... [more]
CLPB_PROMM5.794e-2341.94Chaperone protein clpB OS=Prochlorococcus marinus ... [more]
CLPB_BRAJA9.882e-2346.55Chaperone protein clpB OS=Bradyrhizobium japonicum... [more]
CLPB_RHIME1.291e-2246.67Chaperone protein clpB OS=Rhizobium meliloti GN=cl... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DA11ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3DA11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872870 ID=FC872870; Name=FC872870; organism=Citrus clementina; type=EST; length=620bp
GGGTGGATGCTGCAAGATCAATATTCCGCCCCGAGTTCATGAACCGAGTA
GATGAGTATATAGTATTCCAACCACTGGACCGTGACCAGATAAGCAGTAT
TGTGAGGTTACAGTTGGATCGGGTGCAGAAGAGGATTGCAGACCGGAAGA
TGAAAATGCAAGTGACCGATGCAGCTATTCAGCTCCTTGGGAGTCTTGGG
TATGACCCCAACTATGGTGGAAGGCCGGTCAAGAGAGTGATTCAGCAGTA
CGTTGAAAATGAGCTTGCCAAGGGCATTCTGAGAGGGGAGTTCAAGGATG
AAGACACAATTGTAATAGACACTGAAGTTACAGCATTTTCCAATGGCCAG
CTTCCGCAGCAAAAGCTAGTCTTCAGGAGACTTGATACCAGTTCGGATGC
TTCTGCTGCAGATAACCAAGAAGCTTTCTCACAGACAGCATAAATGTCTG
TCCAATGTGTTTAATTTTACCAAATTATATTTGTGTTCAGCAAAATTATG
AGCGAATTTTCTTAACTGATAGGCTGTAACCTGCTTCTTGTATATGATGA
TGCTTTATACAAAATCATAAGCCTTGAAGAGTTTCTTTTTCAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
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