FC872870
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 8.959e-16 Identity = 36/104 (34.62%), Postives = 69/104 (66.35%), Query Frame = 3 Query: 15 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 326 + FRPEF+NR+DE IVF+ L + ++ I + L V +R+ +++++QVT+ + GY+P+YG RP++R I + +E+ +A+ +L E K+ D++++D + Sbjct: 795 KQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFQRLKTKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVD 898
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 8.959e-16 Identity = 36/104 (34.62%), Postives = 69/104 (66.35%), Query Frame = 3 Query: 15 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 326 + FRPEF+NR+DE IVF+ L + ++ I + L V +R+ +++++QVT+ + GY+P+YG RP++R I + +E+ +A+ +L E K+ D++++D + Sbjct: 795 KQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKVKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLANEIKEGDSVIVDVD 898
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_LISMO (Chaperone protein clpB OS=Listeria monocytogenes GN=clpB PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.170e-15 Identity = 40/102 (39.22%), Postives = 65/102 (63.73%), Query Frame = 3 Query: 15 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 320 +S F+PEF+NRVD+ I+F+PL I IV ++ +Q R+AD+++ + ++D A + YDP YG RP+KR I ++VE LA+ I+ G+ ++ ID Sbjct: 753 QSEFKPEFLNRVDDIILFKPLTLADIKGIVEKLVEELQIRLADQEITITISDDAKAFIAEEAYDPVYGARPLKRYIVRHVETPLAREIVSGKIMPHSSVEID 854
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_LISMF (Chaperone protein clpB OS=Listeria monocytogenes serotype 4b (strain F2365) GN=clpB PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.170e-15 Identity = 40/102 (39.22%), Postives = 65/102 (63.73%), Query Frame = 3 Query: 15 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 320 +S F+PEF+NRVD+ I+F+PL I IV ++ +Q R+AD+++ + ++D A + YDP YG RP+KR I ++VE LA+ I+ G+ ++ ID Sbjct: 753 QSEFKPEFLNRVDDIILFKPLTLADIKGIVEKLVEELQIRLADQEITITISDNAKAFIAEEAYDPVYGARPLKRYIVRHVETPLAREIVSGKIMPHSSVEID 854
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_CAMJE (Chaperone protein clpB OS=Campylobacter jejuni GN=clpB PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.170e-15 Identity = 36/104 (34.62%), Postives = 67/104 (64.42%), Query Frame = 3 Query: 15 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 326 ++ F+PEF+NR+D+ I F PL +D+ IV+L +Q + ++ +K +++ A L+ G+DP++G RP++R I +E++L+ IL E + D+I+ID + Sbjct: 745 KNFFKPEFLNRLDDIITFNPLGKDEAYEIVKLLFKDLQMSLENKGIKASLSENAALLIAKDGFDPDFGARPLRRAIYDLIEDKLSDMILADELHENDSIIIDAK 848
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPE_BACSU (ATP-dependent Clp protease ATP-binding subunit clpE OS=Bacillus subtilis GN=clpE PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.528e-15 Identity = 39/110 (35.45%), Postives = 69/110 (62.73%), Query Frame = 3 Query: 3 VDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGIL-RGEFKDEDTIVIDTEV 329 +D+ F+PEF+NR D I F+ L+++ + IV L L +++ +A+R + + VTD A + + LGY P++G RP++R IQ++VE+E+ +L GE I+ D ++ Sbjct: 585 IDSLSMFFKPEFLNRFDSIIEFRSLEKEHLVKIVSLLLGELEETLAERGISLNVTDEAKEKIAELGYHPSFGARPLRRTIQEWVEDEMTDLLLDNGEITSFHVILEDDKI 694
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPC_STAAW (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MW2) GN=clpC PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.528e-15 Identity = 38/108 (35.19%), Postives = 68/108 (62.96%), Query Frame = 3 Query: 15 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAF 338 ++ FRPEF+NRVD+ IVF L ++++ IV + ++++ R++++ + + VTD A + GYDP YG RP+ R IQ+ +E+ L++ IL G + + +D + F Sbjct: 694 KNSFRPEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPLIRAIQKTIEDNLSELILDGNQIEGKKVTVDHDGKEF 801
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPC_STAAS (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MSSA476) GN=clpC PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.528e-15 Identity = 38/108 (35.19%), Postives = 68/108 (62.96%), Query Frame = 3 Query: 15 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAF 338 ++ FRPEF+NRVD+ IVF L ++++ IV + ++++ R++++ + + VTD A + GYDP YG RP+ R IQ+ +E+ L++ IL G + + +D + F Sbjct: 694 KNSFRPEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPLIRAIQKTIEDNLSELILDGNQIEGKKVTVDHDGKEF 801
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPC_STAAR (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MRSA252) GN=clpC PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.528e-15 Identity = 38/108 (35.19%), Postives = 68/108 (62.96%), Query Frame = 3 Query: 15 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAF 338 ++ FRPEF+NRVD+ IVF L ++++ IV + ++++ R++++ + + VTD A + GYDP YG RP+ R IQ+ +E+ L++ IL G + + +D + F Sbjct: 694 KNSFRPEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPLIRAIQKTIEDNLSELILDGNQIEGKKVTVDHDGKEF 801
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPC_STAAN (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain N315) GN=clpC PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.528e-15 Identity = 38/108 (35.19%), Postives = 68/108 (62.96%), Query Frame = 3 Query: 15 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAF 338 ++ FRPEF+NRVD+ IVF L ++++ IV + ++++ R++++ + + VTD A + GYDP YG RP+ R IQ+ +E+ L++ IL G + + +D + F Sbjct: 694 KNSFRPEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPLIRAIQKTIEDNLSELILDGNQIEGKKVTVDHDGKEF 801 The following BLAST results are available for this feature:
BLAST of FC872870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 175
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Sequences
The
following sequences are available for this feature:
EST sequence >FC872870 ID=FC872870; Name=FC872870; organism=Citrus clementina; type=EST; length=620bpback to top |