FC872870

Overview
NameFC872870
Unique NameFC872870
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.959e-16
Identity = 36/104 (34.62%), Postives = 69/104 (66.35%), Query Frame = 3
Query:   15 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 326
            +  FRPEF+NR+DE IVF+ L + ++  I  + L  V +R+  +++++QVT+     +   GY+P+YG RP++R I + +E+ +A+ +L  E K+ D++++D +
Sbjct:  795 KQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFQRLKTKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVD 898          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.959e-16
Identity = 36/104 (34.62%), Postives = 69/104 (66.35%), Query Frame = 3
Query:   15 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 326
            +  FRPEF+NR+DE IVF+ L + ++  I  + L  V +R+  +++++QVT+     +   GY+P+YG RP++R I + +E+ +A+ +L  E K+ D++++D +
Sbjct:  795 KQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKVKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLANEIKEGDSVIVDVD 898          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_LISMO (Chaperone protein clpB OS=Listeria monocytogenes GN=clpB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.170e-15
Identity = 40/102 (39.22%), Postives = 65/102 (63.73%), Query Frame = 3
Query:   15 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 320
            +S F+PEF+NRVD+ I+F+PL    I  IV   ++ +Q R+AD+++ + ++D A   +    YDP YG RP+KR I ++VE  LA+ I+ G+     ++ ID
Sbjct:  753 QSEFKPEFLNRVDDIILFKPLTLADIKGIVEKLVEELQIRLADQEITITISDDAKAFIAEEAYDPVYGARPLKRYIVRHVETPLAREIVSGKIMPHSSVEID 854          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_LISMF (Chaperone protein clpB OS=Listeria monocytogenes serotype 4b (strain F2365) GN=clpB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.170e-15
Identity = 40/102 (39.22%), Postives = 65/102 (63.73%), Query Frame = 3
Query:   15 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 320
            +S F+PEF+NRVD+ I+F+PL    I  IV   ++ +Q R+AD+++ + ++D A   +    YDP YG RP+KR I ++VE  LA+ I+ G+     ++ ID
Sbjct:  753 QSEFKPEFLNRVDDIILFKPLTLADIKGIVEKLVEELQIRLADQEITITISDNAKAFIAEEAYDPVYGARPLKRYIVRHVETPLAREIVSGKIMPHSSVEID 854          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_CAMJE (Chaperone protein clpB OS=Campylobacter jejuni GN=clpB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.170e-15
Identity = 36/104 (34.62%), Postives = 67/104 (64.42%), Query Frame = 3
Query:   15 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 326
            ++ F+PEF+NR+D+ I F PL +D+   IV+L    +Q  + ++ +K  +++ A  L+   G+DP++G RP++R I   +E++L+  IL  E  + D+I+ID +
Sbjct:  745 KNFFKPEFLNRLDDIITFNPLGKDEAYEIVKLLFKDLQMSLENKGIKASLSENAALLIAKDGFDPDFGARPLRRAIYDLIEDKLSDMILADELHENDSIIIDAK 848          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPE_BACSU (ATP-dependent Clp protease ATP-binding subunit clpE OS=Bacillus subtilis GN=clpE PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.528e-15
Identity = 39/110 (35.45%), Postives = 69/110 (62.73%), Query Frame = 3
Query:    3 VDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGIL-RGEFKDEDTIVIDTEV 329
            +D+    F+PEF+NR D  I F+ L+++ +  IV L L  +++ +A+R + + VTD A + +  LGY P++G RP++R IQ++VE+E+   +L  GE      I+ D ++
Sbjct:  585 IDSLSMFFKPEFLNRFDSIIEFRSLEKEHLVKIVSLLLGELEETLAERGISLNVTDEAKEKIAELGYHPSFGARPLRRTIQEWVEDEMTDLLLDNGEITSFHVILEDDKI 694          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPC_STAAW (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MW2) GN=clpC PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.528e-15
Identity = 38/108 (35.19%), Postives = 68/108 (62.96%), Query Frame = 3
Query:   15 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAF 338
            ++ FRPEF+NRVD+ IVF  L ++++  IV + ++++  R++++ + + VTD A   +   GYDP YG RP+ R IQ+ +E+ L++ IL G   +   + +D +   F
Sbjct:  694 KNSFRPEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPLIRAIQKTIEDNLSELILDGNQIEGKKVTVDHDGKEF 801          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPC_STAAS (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MSSA476) GN=clpC PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.528e-15
Identity = 38/108 (35.19%), Postives = 68/108 (62.96%), Query Frame = 3
Query:   15 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAF 338
            ++ FRPEF+NRVD+ IVF  L ++++  IV + ++++  R++++ + + VTD A   +   GYDP YG RP+ R IQ+ +E+ L++ IL G   +   + +D +   F
Sbjct:  694 KNSFRPEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPLIRAIQKTIEDNLSELILDGNQIEGKKVTVDHDGKEF 801          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPC_STAAR (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MRSA252) GN=clpC PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.528e-15
Identity = 38/108 (35.19%), Postives = 68/108 (62.96%), Query Frame = 3
Query:   15 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAF 338
            ++ FRPEF+NRVD+ IVF  L ++++  IV + ++++  R++++ + + VTD A   +   GYDP YG RP+ R IQ+ +E+ L++ IL G   +   + +D +   F
Sbjct:  694 KNSFRPEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPLIRAIQKTIEDNLSELILDGNQIEGKKVTVDHDGKEF 801          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPC_STAAN (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain N315) GN=clpC PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.528e-15
Identity = 38/108 (35.19%), Postives = 68/108 (62.96%), Query Frame = 3
Query:   15 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAF 338
            ++ FRPEF+NRVD+ IVF  L ++++  IV + ++++  R++++ + + VTD A   +   GYDP YG RP+ R IQ+ +E+ L++ IL G   +   + +D +   F
Sbjct:  694 KNSFRPEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPLIRAIQKTIEDNLSELILDGNQIEGKKVTVDHDGKEF 801          
The following BLAST results are available for this feature:
BLAST of FC872870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
CLPC_PEA8.959e-1634.62ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPAB_SOLLC8.959e-1634.62ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_LISMO1.170e-1539.22Chaperone protein clpB OS=Listeria monocytogenes G... [more]
CLPB_LISMF1.170e-1539.22Chaperone protein clpB OS=Listeria monocytogenes s... [more]
CLPB_CAMJE1.170e-1534.62Chaperone protein clpB OS=Campylobacter jejuni GN=... [more]
CLPE_BACSU1.528e-1535.45ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAW1.528e-1535.19ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAS1.528e-1535.19ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAR1.528e-1535.19ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAN1.528e-1535.19ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DA11ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3DA11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872870 ID=FC872870; Name=FC872870; organism=Citrus clementina; type=EST; length=620bp
GGGTGGATGCTGCAAGATCAATATTCCGCCCCGAGTTCATGAACCGAGTA
GATGAGTATATAGTATTCCAACCACTGGACCGTGACCAGATAAGCAGTAT
TGTGAGGTTACAGTTGGATCGGGTGCAGAAGAGGATTGCAGACCGGAAGA
TGAAAATGCAAGTGACCGATGCAGCTATTCAGCTCCTTGGGAGTCTTGGG
TATGACCCCAACTATGGTGGAAGGCCGGTCAAGAGAGTGATTCAGCAGTA
CGTTGAAAATGAGCTTGCCAAGGGCATTCTGAGAGGGGAGTTCAAGGATG
AAGACACAATTGTAATAGACACTGAAGTTACAGCATTTTCCAATGGCCAG
CTTCCGCAGCAAAAGCTAGTCTTCAGGAGACTTGATACCAGTTCGGATGC
TTCTGCTGCAGATAACCAAGAAGCTTTCTCACAGACAGCATAAATGTCTG
TCCAATGTGTTTAATTTTACCAAATTATATTTGTGTTCAGCAAAATTATG
AGCGAATTTTCTTAACTGATAGGCTGTAACCTGCTTCTTGTATATGATGA
TGCTTTATACAAAATCATAAGCCTTGAAGAGTTTCTTTTTCAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
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