FC872870

Overview
NameFC872870
Unique NameFC872870
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_LACLA (Chaperone protein clpB OS=Lactococcus lactis subsp. lactis GN=clpB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.065e-12
Identity = 30/101 (29.70%), Postives = 63/101 (62.38%), Query Frame = 3
Query:   15 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVI 317
            R+ F+PEF+NR+D+ I+F+PL  + I +I+     ++  R+ +  +++++++     +    Y+P YG RP+KR + + +EN LAK I+ G+   +  +++
Sbjct:  751 RAHFKPEFLNRIDDTILFKPLALEDIKNIIVKMTSQLSHRLEEMDVQLELSEEVKVWIAENAYEPAYGARPLKRYLTKVIENPLAKLIIGGKIPPKSKVIV 851          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_STRMU (Chaperone protein clpB OS=Streptococcus mutans GN=clpB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.697e-12
Identity = 33/105 (31.43%), Postives = 65/105 (61.90%), Query Frame = 3
Query:    3 VDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGE-FKDEDTIV 314
            +D     FRPEF+NR+DE ++F  L    ++ +V++ +  +Q R+ ++ + + +T++   LL   G+D  +G RP++R I Q +EN LA  +++ +  K+++T V
Sbjct:  742 LDELNHSFRPEFLNRIDETVLFNALSEKDMTGVVKVMVSDLQARLLEQDIHLTLTESVYILLAKEGFDAAFGARPMQRTIMQKLENPLALYLIQNQKNKEKETFV 846          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPL_LACLA (ATP-dependent Clp protease ATP-binding subunit clpL OS=Lactococcus lactis subsp. lactis GN=clpL PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.601e-12
Identity = 39/103 (37.86%), Postives = 60/103 (58.25%), Query Frame = 3
Query:   24 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGIL-RGEFKDEDTIVIDTEV 329
            FRPEF NR+D  + F  L +  +S IV L L  VQK +A + +K++VT AA   L   GYD   G RP++RVI+Q + +++    L   + K+    ++D E+
Sbjct:  656 FRPEFRNRLDNIVEFSHLTKQDLSQIVDLMLADVQKTLAKKSIKLEVTKAAKDWLMEQGYDEAMGARPLRRVIEQQIRDKVTDFYLDHLDVKNLKADLVDAEI 758          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPA_RHOBL (ClpA homolog protein OS=Rhodopseudomonas blastica PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.339e-11
Identity = 35/94 (37.23%), Postives = 56/94 (59.57%), Query Frame = 3
Query:    9 AARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGE 290
            A    F PEF NR+D  I F PL R+ I  +V   + +++ ++ DR + +++T  A   LG  GYD   G RP+ RVIQ++++  LA+ +L G+
Sbjct:  661 AVERTFTPEFRNRLDAVISFAPLGREIILQVVEKFVLQLEAQLIDRNVHIELTPEAAAWLGEKGYDDKMGARPLGRVIQEHIKKPLAEELLFGK 754          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: ADPR_RHOER (ATP-dependent protease ATP-binding subunit-like protein OS=Rhodococcus erythropolis PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.644e-11
Identity = 30/91 (32.97%), Postives = 52/91 (57.14%), Query Frame = 3
Query:    9 AARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGIL 281
            A    F PEF NR+DE ++    D      + RL+++ +  R+A R + ++V D+A+ LL   G+DP YG R ++R I+  + + +A  +L
Sbjct:  234 ALEKFFDPEFFNRIDETVILDEFDDQTAEQVTRLEIELITTRLARRGIDVEVDDSAVALLQRRGFDPVYGARGLRRTIRNVLADPVAGAVL 324          
The following BLAST results are available for this feature:
BLAST of FC872870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
CLPB_LACLA2.065e-1229.70Chaperone protein clpB OS=Lactococcus lactis subsp... [more]
CLPB_STRMU2.697e-1231.43Chaperone protein clpB OS=Streptococcus mutans GN=... [more]
CLPL_LACLA4.601e-1237.86ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPA_RHOBL1.339e-1137.23ClpA homolog protein OS=Rhodopseudomonas blastica ... [more]
ADPR_RHOER6.644e-1132.97ATP-dependent protease ATP-binding subunit-like pr... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DA11ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3DA11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872870 ID=FC872870; Name=FC872870; organism=Citrus clementina; type=EST; length=620bp
GGGTGGATGCTGCAAGATCAATATTCCGCCCCGAGTTCATGAACCGAGTA
GATGAGTATATAGTATTCCAACCACTGGACCGTGACCAGATAAGCAGTAT
TGTGAGGTTACAGTTGGATCGGGTGCAGAAGAGGATTGCAGACCGGAAGA
TGAAAATGCAAGTGACCGATGCAGCTATTCAGCTCCTTGGGAGTCTTGGG
TATGACCCCAACTATGGTGGAAGGCCGGTCAAGAGAGTGATTCAGCAGTA
CGTTGAAAATGAGCTTGCCAAGGGCATTCTGAGAGGGGAGTTCAAGGATG
AAGACACAATTGTAATAGACACTGAAGTTACAGCATTTTCCAATGGCCAG
CTTCCGCAGCAAAAGCTAGTCTTCAGGAGACTTGATACCAGTTCGGATGC
TTCTGCTGCAGATAACCAAGAAGCTTTCTCACAGACAGCATAAATGTCTG
TCCAATGTGTTTAATTTTACCAAATTATATTTGTGTTCAGCAAAATTATG
AGCGAATTTTCTTAACTGATAGGCTGTAACCTGCTTCTTGTATATGATGA
TGCTTTATACAAAATCATAAGCCTTGAAGAGTTTCTTTTTCAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
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