FC872870

Overview
NameFC872870
Unique NameFC872870
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_VIBVU (Chaperone protein clpB OS=Vibrio vulnificus GN=clpB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.152e-21
Identity = 46/88 (52.27%), Postives = 64/88 (72.73%), Query Frame = 3
Query:   24 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRG 287
            FRPEF+NRVDE +VF PL +D I SI  +QL+R+  R+ +    ++V+D A++L+  +G+DP YG RP+KR IQQ +EN LAK IL G
Sbjct:  749 FRPEFLNRVDETVVFHPLGQDHIKSIAAIQLNRLANRMEEHGYPLEVSDKALELIAQVGFDPVYGARPLKRAIQQSIENPLAKSILAG 836          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_PHOLL (Chaperone protein clpB OS=Photorhabdus luminescens subsp. laumondii GN=clpB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.152e-21
Identity = 46/101 (45.54%), Postives = 68/101 (67.33%), Query Frame = 3
Query:   24 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 326
            FRPEF+NR+DE +VF PL R  +S+I  +QL R+ KR+ +R  ++ +T  A+++L   G+DP YG RP+KR IQQ +EN LA+ IL G+      + +D E
Sbjct:  749 FRPEFINRIDEAVVFHPLGRRHLSAIADIQLQRLYKRLEERGYQVTITQQALEILAEAGFDPVYGARPLKRAIQQEIENPLAQKILSGQLLPGKPVTLDVE 849          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB2_THEEB (Chaperone protein clpB 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.423e-21
Identity = 47/106 (44.34%), Postives = 76/106 (71.70%), Query Frame = 3
Query:    3 VDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 320
            + +A+  FRPEF+NR+D+ I+F  L R +++ I ++QL RV+K +AD+K+ +++T AA+  L ++G+DP YG RP+KR IQ+ +EN LA  +L   F   DTI++D
Sbjct:  757 LQSAQKYFRPEFLNRIDDVILFHGLGRTELAQIAQIQLRRVEKLLADQKIHLRLTPAALDHLVAVGFDPVYGARPLKRAIQRELENPLAVKLLEEVFTPGDTILVD 862          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNY3 (Chaperone protein clpB 1 OS=Synechocystis sp. (strain PCC 6803) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.423e-21
Identity = 47/106 (44.34%), Postives = 72/106 (67.92%), Query Frame = 3
Query:    3 VDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 320
            + + R  FRPEF+NR+D+ I+F  L RD++  IV LQ+ R++K + ++K+ + ++DAA+  + S GYDP YG RP+KR IQ+ +EN +A  IL   F   D I+ID
Sbjct:  758 LQSLRKHFRPEFLNRIDDLIIFHTLKRDELRRIVVLQIKRIEKLLDEQKITLSLSDAALDHIVSAGYDPTYGARPLKRAIQRQLENPIATKILENTFVAGDKILID 863          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_SHEON (Chaperone protein clpB OS=Shewanella oneidensis GN=clpB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.082e-21
Identity = 42/89 (47.19%), Postives = 66/89 (74.16%), Query Frame = 3
Query:   24 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGE 290
            FRPEF+NR+DE +VF PLD + I  I  +Q+  ++KR+A++   +++TD A+ L+  +G+DP YG RP+KR +QQ +EN LA+ +LRG+
Sbjct:  749 FRPEFLNRIDESVVFHPLDAENIKHIASIQIASLRKRLAEKDYTLEITDEALSLIAEIGFDPVYGARPLKRALQQEMENPLAQKLLRGD 837          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_NEIMB (Chaperone protein clpB OS=Neisseria meningitidis serogroup B GN=clpB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.082e-21
Identity = 43/101 (42.57%), Postives = 69/101 (68.32%), Query Frame = 3
Query:   24 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 326
            FRPE +NR+DE +VF  LD+D I +I ++QL  ++KR+  + +++ V+DAA+ ++   G+DP YG RP+KR IQ  +EN LAK +L G +  E  I ++ +
Sbjct:  752 FRPEMINRIDEVVVFHGLDQDNIRNIAKIQLKGLEKRLEKQNLRLAVSDAALDIIAKAGFDPIYGARPLKRAIQSEIENPLAKALLAGNYAPESEIRVEAD 852          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_CORDI (Chaperone protein clpB OS=Corynebacterium diphtheriae GN=clpB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.082e-21
Identity = 42/109 (38.53%), Postives = 78/109 (71.56%), Query Frame = 3
Query:    3 VDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEV 329
            +DA +  F+PEF+NR+D+ ++F PL ++Q++ IV +Q+ ++ +R+A R++ + V+D+A   L   GY+P YG RP++R+IQQ + ++LAK +L GE +D   + +D ++
Sbjct:  731 MDAVKRAFKPEFVNRLDDVVIFDPLSQEQLTHIVEIQIAQLAQRLAARRLTLAVSDSAKLWLAERGYEPAYGARPLRRLIQQAIGDQLAKKLLSGEVRDGSEVHVDADL 839          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_BACTN (Chaperone protein clpB OS=Bacteroides thetaiotaomicron GN=clpB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.082e-21
Identity = 46/99 (46.46%), Postives = 69/99 (69.70%), Query Frame = 3
Query:   27 RPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDT 323
            RPEF+NR+DE I+F PL   +I  IV LQ+  VQK +A+  +++++TDAA+  L  +GYDP +G RPVKR IQ+Y+ N+L+K +L  E      I++D+
Sbjct:  755 RPEFLNRIDETIMFLPLTETEIRQIVLLQIKGVQKMLAENGVELEMTDAALNFLSQVGYDPEFGARPVKRAIQRYLLNDLSKKLLSQEVDRSKAIIVDS 853          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_DEIRA (Chaperone protein clpB OS=Deinococcus radiodurans GN=clpB PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 9.250e-21
Identity = 47/106 (44.34%), Postives = 70/106 (66.04%), Query Frame = 3
Query:    3 VDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 320
            +D  R  FRPEF+NRVD+ IVF  L    + SIV +QL  +++R+A+R++ + +T+ A   L  LGYDP YG RP++R I QY+E  LA+ IL G+ +D   + +D
Sbjct:  733 MDELRGEFRPEFLNRVDDIIVFDALTAKDLQSIVDIQLGGLRRRLAERRITLHLTEDAKDKLAELGYDPAYGARPLRRTISQYIETPLAREILGGQIQDGSVLNVD 838          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_PASMU (Chaperone protein clpB OS=Pasteurella multocida GN=clpB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.208e-20
Identity = 46/99 (46.46%), Postives = 64/99 (64.65%), Query Frame = 3
Query:   24 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 320
            FRPEF+NR+DE +VF PL ++ I  I  +QL R+ KR+     ++  TDA +  +G +GYDP YG RP+KR IQQ +EN LA+ IL G+      + ID
Sbjct:  747 FRPEFINRIDETVVFHPLGKENIREIATIQLARLIKRMESHGYQLHFTDACLDFIGEVGYDPVYGARPLKRAIQQEIENPLAQQILSGKLLPNQLVTID 845          
The following BLAST results are available for this feature:
BLAST of FC872870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
CLPB_VIBVU4.152e-2152.27Chaperone protein clpB OS=Vibrio vulnificus GN=clp... [more]
CLPB_PHOLL4.152e-2145.54Chaperone protein clpB OS=Photorhabdus luminescens... [more]
CLPB2_THEEB5.423e-2144.34Chaperone protein clpB 2 OS=Thermosynechococcus el... [more]
CLPB1_SYNY35.423e-2144.34Chaperone protein clpB 1 OS=Synechocystis sp. (str... [more]
CLPB_SHEON7.082e-2147.19Chaperone protein clpB OS=Shewanella oneidensis GN... [more]
CLPB_NEIMB7.082e-2142.57Chaperone protein clpB OS=Neisseria meningitidis s... [more]
CLPB_CORDI7.082e-2138.53Chaperone protein clpB OS=Corynebacterium diphther... [more]
CLPB_BACTN7.082e-2146.46Chaperone protein clpB OS=Bacteroides thetaiotaomi... [more]
CLPB_DEIRA9.250e-2144.34Chaperone protein clpB OS=Deinococcus radiodurans ... [more]
CLPB_PASMU1.208e-2046.46Chaperone protein clpB OS=Pasteurella multocida GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DA11ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3DA11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872870 ID=FC872870; Name=FC872870; organism=Citrus clementina; type=EST; length=620bp
GGGTGGATGCTGCAAGATCAATATTCCGCCCCGAGTTCATGAACCGAGTA
GATGAGTATATAGTATTCCAACCACTGGACCGTGACCAGATAAGCAGTAT
TGTGAGGTTACAGTTGGATCGGGTGCAGAAGAGGATTGCAGACCGGAAGA
TGAAAATGCAAGTGACCGATGCAGCTATTCAGCTCCTTGGGAGTCTTGGG
TATGACCCCAACTATGGTGGAAGGCCGGTCAAGAGAGTGATTCAGCAGTA
CGTTGAAAATGAGCTTGCCAAGGGCATTCTGAGAGGGGAGTTCAAGGATG
AAGACACAATTGTAATAGACACTGAAGTTACAGCATTTTCCAATGGCCAG
CTTCCGCAGCAAAAGCTAGTCTTCAGGAGACTTGATACCAGTTCGGATGC
TTCTGCTGCAGATAACCAAGAAGCTTTCTCACAGACAGCATAAATGTCTG
TCCAATGTGTTTAATTTTACCAAATTATATTTGTGTTCAGCAAAATTATG
AGCGAATTTTCTTAACTGATAGGCTGTAACCTGCTTCTTGTATATGATGA
TGCTTTATACAAAATCATAAGCCTTGAAGAGTTTCTTTTTCAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
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