FC872870

Overview
NameFC872870
Unique NameFC872870
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_GEOSL (Chaperone protein clpB OS=Geobacter sulfurreducens GN=clpB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.208e-20
Identity = 42/103 (40.78%), Postives = 75/103 (72.82%), Query Frame = 3
Query:   24 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVT 332
            F+PEF+NR+DE +++  L  +QI  IV +Q++ +++R+ADR++ ++++D A + L   GYDP YG RP+KR IQ+ +++ LA  +L G+F++ DT+ +D  V+
Sbjct:  754 FKPEFLNRIDEIVIYHALPLEQIKKIVDIQVECLKQRLADRRIVLELSDKAREYLSREGYDPAYGARPLKRTIQRKIQDPLALALLEGKFQEGDTVRVDLSVS 856          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_TREDE (Chaperone protein clpB OS=Treponema denticola GN=clpB PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.578e-20
Identity = 45/102 (44.12%), Postives = 70/102 (68.63%), Query Frame = 3
Query:   15 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 320
            R  FRPEF+NR+DE + F  L+++ I  IV +QL  V +R+  R++ ++V+D A   L  +GYDP +G RP+KR IQ  +EN+LA+ +L G+F +  TI++D
Sbjct:  747 RDNFRPEFLNRIDEILTFNRLEKEHIRKIVDIQLRSVAERLQARRLGLKVSDKAKDFLADIGYDPMFGARPLKRAIQAELENKLAREVLEGKFPEGSTILVD 848          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_DICNO (Chaperone protein clpB OS=Dichelobacter nodosus GN=clpB PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.578e-20
Identity = 47/106 (44.34%), Postives = 72/106 (67.92%), Query Frame = 3
Query:   24 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFS 341
            FRPEF+NR+DE IVF  L +  +  I ++QL+R+++R+  R++ + V + AI  L  LGYDP +G RP+KR IQ Y+EN LA+ +L G++  + TI I  + T F+
Sbjct:  753 FRPEFINRIDEAIVFHGLAKTHMYRIAQIQLERLRQRLQTRELLLSVEEDAINQLVELGYDPLFGARPLKRAIQNYIENPLAQALLAGQYLPQSTITIGFDGTNFT 858          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_CORGL (Chaperone protein clpB OS=Corynebacterium glutamicum GN=clpB PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.578e-20
Identity = 43/106 (40.57%), Postives = 75/106 (70.75%), Query Frame = 3
Query:    3 VDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 320
            +DA +  F+PEF+NR+D+ ++F  L  +Q++SIV +Q+ ++  R+A R++ ++V+D+A   L   GYDP YG RP++R+IQQ + + LAK +L G  +D D +++D
Sbjct:  733 MDAVKMAFKPEFVNRLDDVVIFDRLSPEQLTSIVDIQIKQLTDRLAGRRLNLRVSDSAKAWLAERGYDPAYGARPLRRLIQQAIGDTLAKELLAGNVRDGDGVLVD 838          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_NEIMA (Chaperone protein clpB OS=Neisseria meningitidis serogroup A GN=clpB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.691e-20
Identity = 43/101 (42.57%), Postives = 68/101 (67.33%), Query Frame = 3
Query:   24 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 326
            FRPE +NR+DE +VF  LD+  I SI ++QL  ++KR+  + +++ V+DAA+ ++   G+DP YG RP+KR IQ  +EN LAK +L G +  E  I ++ +
Sbjct:  752 FRPEMINRIDEVVVFHGLDQANIRSIAKIQLKGLEKRLEKQNLRLAVSDAALDIIAKAGFDPIYGARPLKRAIQSEIENPLAKALLAGNYAPESEIRVEAD 852          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_BACCR (Chaperone protein clpB OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=clpB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.691e-20
Identity = 46/104 (44.23%), Postives = 70/104 (67.31%), Query Frame = 3
Query:   15 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 326
            R  FRPEF+NRVDE I+F+PL  ++I  IV   +  +Q R+ADR + +++TDAA + +   G+DP YG RP+KR +Q+ VE +LA+ ++ G   D   +V+D E
Sbjct:  754 RGHFRPEFLNRVDEIILFKPLTTNEIKGIVDKIVKELQGRLADRHITVELTDAAKEFVVEAGFDPMYGARPLKRYVQRQVETKLARELIAGTITDNSHVVVDVE 857          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_BRUSU (Chaperone protein clpB OS=Brucella suis GN=clpB PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.590e-20
Identity = 54/136 (39.71%), Postives = 87/136 (63.97%), Query Frame = 3
Query:   15 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFSNGQLPQQKLVFRRLDTSSDASAADNQE 422
            R+ FRPEF+NRVDE I+F  L R+ + +IV +Q+ R+Q  ++DRK+ +Q+ D A + L + GYDP YG RP+KRVIQ+ V++ LA+ IL G+  D   +    ++TA S+      +L FR +  +  A+  + ++
Sbjct:  746 RASFRPEFLNRVDEIILFHRLRREDMGAIVDIQMQRLQYLLSDRKITLQLEDDAREWLANKGYDPAYGARPLKRVIQKEVQDPLAERILLGDILDGSLV----KITAGSD------RLNFRPISGAFSAAEPERED 871          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_BRUME (Chaperone protein clpB OS=Brucella melitensis GN=clpB PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 4.590e-20
Identity = 54/136 (39.71%), Postives = 87/136 (63.97%), Query Frame = 3
Query:   15 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFSNGQLPQQKLVFRRLDTSSDASAADNQE 422
            R+ FRPEF+NRVDE I+F  L R+ + +IV +Q+ R+Q  ++DRK+ +Q+ D A + L + GYDP YG RP+KRVIQ+ V++ LA+ IL G+  D   +    ++TA S+      +L FR +  +  A+  + ++
Sbjct:  746 RASFRPEFLNRVDEIILFHRLRREDMGAIVDIQMQRLQYLLSDRKITLQLEDDAREWLANKGYDPAYGARPLKRVIQKEVQDPLAERILLGDILDGSLV----KITAGSD------RLNFRPISGAFSAAEPERED 871          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_AGRT5 (Chaperone protein clpB OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=clpB PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 4.590e-20
Identity = 47/105 (44.76%), Postives = 72/105 (68.57%), Query Frame = 3
Query:    3 VDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVI 317
            ++  RS FRPEF+NR+D+ I+F  L RD++ +IV +QL R+   +ADRK+ +++ + A   L + GYDP YG RP+KRVIQ+ V++ LA+ IL GE  D   + +
Sbjct:  744 MERVRSHFRPEFLNRIDDIILFHRLRRDEMGAIVEIQLKRLVSLLADRKITLELDEDARSWLANKGYDPAYGARPLKRVIQKSVQDRLAEMILGGEIPDGSRVKV 848          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: HSP78_SCHPO (Heat shock protein 78, mitochondrial OS=Schizosaccharomyces pombe GN=hsp78 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.995e-20
Identity = 44/106 (41.51%), Postives = 70/106 (66.04%), Query Frame = 3
Query:    3 VDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 320
            +D  +  + PEF+NR+D+ IVF  L    +  IV ++LD VQ+R+ DR++ + VT+AA + L   GY P YG RP+ R+IQ+ + N +A  I++GE K ++ +VID
Sbjct:  676 MDVVQKYYPPEFLNRIDDQIVFNKLSEKNLEDIVNVRLDEVQQRLNDRRIILTVTEAARKWLAEKGYSPAYGARPLNRLIQKRILNTMAMKIIQGEIKSDENVVID 781          
The following BLAST results are available for this feature:
BLAST of FC872870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
CLPB_GEOSL1.208e-2040.78Chaperone protein clpB OS=Geobacter sulfurreducens... [more]
CLPB_TREDE1.578e-2044.12Chaperone protein clpB OS=Treponema denticola GN=c... [more]
CLPB_DICNO1.578e-2044.34Chaperone protein clpB OS=Dichelobacter nodosus GN... [more]
CLPB_CORGL1.578e-2040.57Chaperone protein clpB OS=Corynebacterium glutamic... [more]
CLPB_NEIMA2.691e-2042.57Chaperone protein clpB OS=Neisseria meningitidis s... [more]
CLPB_BACCR2.691e-2044.23Chaperone protein clpB OS=Bacillus cereus (strain ... [more]
CLPB_BRUSU4.590e-2039.71Chaperone protein clpB OS=Brucella suis GN=clpB PE... [more]
CLPB_BRUME4.590e-2039.71Chaperone protein clpB OS=Brucella melitensis GN=c... [more]
CLPB_AGRT54.590e-2044.76Chaperone protein clpB OS=Agrobacterium tumefacien... [more]
HSP78_SCHPO5.995e-2041.51Heat shock protein 78, mitochondrial OS=Schizosacc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB3DA11ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3DA11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872870 ID=FC872870; Name=FC872870; organism=Citrus clementina; type=EST; length=620bp
GGGTGGATGCTGCAAGATCAATATTCCGCCCCGAGTTCATGAACCGAGTA
GATGAGTATATAGTATTCCAACCACTGGACCGTGACCAGATAAGCAGTAT
TGTGAGGTTACAGTTGGATCGGGTGCAGAAGAGGATTGCAGACCGGAAGA
TGAAAATGCAAGTGACCGATGCAGCTATTCAGCTCCTTGGGAGTCTTGGG
TATGACCCCAACTATGGTGGAAGGCCGGTCAAGAGAGTGATTCAGCAGTA
CGTTGAAAATGAGCTTGCCAAGGGCATTCTGAGAGGGGAGTTCAAGGATG
AAGACACAATTGTAATAGACACTGAAGTTACAGCATTTTCCAATGGCCAG
CTTCCGCAGCAAAAGCTAGTCTTCAGGAGACTTGATACCAGTTCGGATGC
TTCTGCTGCAGATAACCAAGAAGCTTTCTCACAGACAGCATAAATGTCTG
TCCAATGTGTTTAATTTTACCAAATTATATTTGTGTTCAGCAAAATTATG
AGCGAATTTTCTTAACTGATAGGCTGTAACCTGCTTCTTGTATATGATGA
TGCTTTATACAAAATCATAAGCCTTGAAGAGTTTCTTTTTCAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
back to top