FC872870

Overview
NameFC872870
Unique NameFC872870
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_BDEBA (Chaperone protein clpB OS=Bdellovibrio bacteriovorus GN=clpB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.830e-20
Identity = 49/102 (48.04%), Postives = 67/102 (65.69%), Query Frame = 3
Query:    6 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTI 311
            +A R  FRPEF+NR+DE ++F+ L   QIS IV++QLD V +R+  +K+ +     AI  L   GYDP YG RP+KRVIQ  + N L+K I+ G+ K  DTI
Sbjct:  743 EALRERFRPEFLNRIDEIVMFKSLGEAQISGIVKVQLDLVAQRLRAKKIGIDFNQEAIDFLAKKGYDPIYGARPLKRVIQTELLNPLSKEIISGKVKAGDTI 844          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_MYCPA (Chaperone protein clpB OS=Mycobacterium paratuberculosis GN=clpB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.023e-19
Identity = 44/104 (42.31%), Postives = 74/104 (71.15%), Query Frame = 3
Query:    9 AARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 320
            A RS F+PEF+NR+D+ I+F  L+  ++  IV +QL ++QKR+A R++ ++V+  A Q L   G+DP YG RP++R++QQ + ++LAK +L G+  D DT+ ++
Sbjct:  734 AVRSAFKPEFINRLDDVIIFHGLEPGELVQIVDIQLAQLQKRLAQRRLTLEVSLPAKQWLAHRGFDPVYGARPLRRLVQQAIGDQLAKQLLAGQVHDGDTVPVN 837          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_BACAN (Chaperone protein clpB OS=Bacillus anthracis GN=clpB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.023e-19
Identity = 45/104 (43.27%), Postives = 70/104 (67.31%), Query Frame = 3
Query:   15 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 326
            R  FRPEF+NRVDE I+F+PL  ++I  IV   +  +Q R+ADR + +++T+AA + +   G+DP YG RP+KR +Q+ VE +LA+ ++ G   D   +V+D E
Sbjct:  754 RGHFRPEFLNRVDEIILFKPLTTNEIKGIVDKIVKELQGRLADRHITVKLTEAAKEFVVEAGFDPMYGARPLKRYVQRQVETKLARELIAGTITDNSHVVVDVE 857          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_MYCLE (Chaperone protein clpB OS=Mycobacterium leprae GN=clpB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.336e-19
Identity = 42/104 (40.38%), Postives = 77/104 (74.04%), Query Frame = 3
Query:    9 AARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 320
            A RS+F+PEF+NR+D+ ++F  L+ +++  IV +QL+++ KR+A R+++++V+  A + L   G+DP YG RP++R++QQ + ++LAK +L GE  D DT+ ++
Sbjct:  734 AVRSVFKPEFINRLDDVLIFDGLNPEELVRIVDIQLEQLGKRLAQRRLQLEVSLPAKRWLAQHGFDPVYGARPLRRLVQQAIGDQLAKMLLAGEVHDGDTLPVN 837          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_HAEDU (Chaperone protein clpB OS=Haemophilus ducreyi GN=clpB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.336e-19
Identity = 43/99 (43.43%), Postives = 68/99 (68.69%), Query Frame = 3
Query:   24 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 320
            FRPEF+NR+DE +VF PLD+  I +I  +QL R+ +R+A+R  ++ ++D A+  +   G+D  +G RP+KR IQQ +EN LA+ IL G+    + ++ID
Sbjct:  748 FRPEFINRIDETVVFHPLDQQHIRAIANIQLQRLIRRLAERGYQVTISDTALDHISQAGFDSLFGARPLKRAIQQELENPLAQQILSGKLLPNNPVIID 846          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_BACC1 (Chaperone protein clpB OS=Bacillus cereus (strain ATCC 10987) GN=clpB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.336e-19
Identity = 45/104 (43.27%), Postives = 69/104 (66.35%), Query Frame = 3
Query:   15 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 326
            R  FRPEF+NRVDE I+F+PL  ++I  IV   +  +Q R+ADR + +++TDAA + +   G+DP YG RP+KR +Q+ VE +LA+ ++     D   +V+D E
Sbjct:  754 RGHFRPEFLNRVDEIILFKPLTTNEIKGIVDKIVKELQGRLADRHITVELTDAAKEFVVEAGFDPMYGARPLKRYVQRQVETKLARELIASTITDNSHVVVDVE 857          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_TREPA (Chaperone protein clpB OS=Treponema pallidum GN=clpB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.278e-19
Identity = 47/99 (47.47%), Postives = 64/99 (64.65%), Query Frame = 3
Query:   24 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 320
            FRPEF+NR+DE ++F+ L R  I  I  +QL  V +R+  R +K++V DAA   L   GYD  +G RP+KR IQ  +EN LA+ IL G F+   TIV+D
Sbjct:  767 FRPEFLNRIDEVLIFKRLTRKHIRLITDIQLQMVVERLESRHIKLRVRDAAKAYLAERGYDDTFGARPLKRAIQTELENALAREILSGRFRGGSTIVVD 865          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_PORGI (Chaperone protein clpB OS=Porphyromonas gingivalis GN=clpB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.278e-19
Identity = 45/98 (45.92%), Postives = 64/98 (65.31%), Query Frame = 3
Query:   27 RPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 320
            RPEF+NR+DE IVF PL   +I  IVRLQLD + +++AD  + +  T+A +      GYDP +G RPVKRV+Q++V NEL+K +L         ++ID
Sbjct:  755 RPEFLNRIDETIVFTPLTEKEIYEIVRLQLDGIVRQLADNDVVLHYTEAVVTFAAREGYDPQFGARPVKRVLQRFVLNELSKALLADTVDSTRPVLID 852          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_RICPR (Chaperone protein clpB OS=Rickettsia prowazekii GN=clpB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.975e-19
Identity = 43/104 (41.35%), Postives = 72/104 (69.23%), Query Frame = 3
Query:   15 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 326
            R++F+PEF+NR+DE I+F  L+R+ I  IV++QL  ++K +  + + ++  ++A+  L   GYDP++G RP+KR+IQ+ ++N LAK IL GE    +T+ I  E
Sbjct:  745 RAVFKPEFLNRLDEIILFHRLNRNNIHDIVKIQLGSLKKILLQQNIILEFDESALNYLAEKGYDPSFGARPLKRLIQREIQNNLAKMILAGEISSGNTVKIRRE 848          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_RICFE (Chaperone protein clpB OS=Rickettsia felis GN=clpB PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 2.975e-19
Identity = 42/108 (38.89%), Postives = 75/108 (69.44%), Query Frame = 3
Query:    3 VDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 326
            ++  +++F+PEF+NR+DE I+F  L+R+ I  IV++QL+ ++K +  + + ++  ++A+  L   GYDP++G RP+KR+IQ+ ++N LAK IL GE    +T+ I  E
Sbjct:  741 MEYVKAVFKPEFLNRLDEIILFHRLNRNNIHDIVKIQLESLKKILLAQNILLEFDESALNYLAEKGYDPSFGARPLKRLIQREIQNNLAKMILAGEISSGNTVKIARE 848          
The following BLAST results are available for this feature:
BLAST of FC872870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
CLPB_BDEBA7.830e-2048.04Chaperone protein clpB OS=Bdellovibrio bacteriovor... [more]
CLPB_MYCPA1.023e-1942.31Chaperone protein clpB OS=Mycobacterium paratuberc... [more]
CLPB_BACAN1.023e-1943.27Chaperone protein clpB OS=Bacillus anthracis GN=cl... [more]
CLPB_MYCLE1.336e-1940.38Chaperone protein clpB OS=Mycobacterium leprae GN=... [more]
CLPB_HAEDU1.336e-1943.43Chaperone protein clpB OS=Haemophilus ducreyi GN=c... [more]
CLPB_BACC11.336e-1943.27Chaperone protein clpB OS=Bacillus cereus (strain ... [more]
CLPB_TREPA2.278e-1947.47Chaperone protein clpB OS=Treponema pallidum GN=cl... [more]
CLPB_PORGI2.278e-1945.92Chaperone protein clpB OS=Porphyromonas gingivalis... [more]
CLPB_RICPR2.975e-1941.35Chaperone protein clpB OS=Rickettsia prowazekii GN... [more]
CLPB_RICFE2.975e-1938.89Chaperone protein clpB OS=Rickettsia felis GN=clpB... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DA11ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3DA11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872870 ID=FC872870; Name=FC872870; organism=Citrus clementina; type=EST; length=620bp
GGGTGGATGCTGCAAGATCAATATTCCGCCCCGAGTTCATGAACCGAGTA
GATGAGTATATAGTATTCCAACCACTGGACCGTGACCAGATAAGCAGTAT
TGTGAGGTTACAGTTGGATCGGGTGCAGAAGAGGATTGCAGACCGGAAGA
TGAAAATGCAAGTGACCGATGCAGCTATTCAGCTCCTTGGGAGTCTTGGG
TATGACCCCAACTATGGTGGAAGGCCGGTCAAGAGAGTGATTCAGCAGTA
CGTTGAAAATGAGCTTGCCAAGGGCATTCTGAGAGGGGAGTTCAAGGATG
AAGACACAATTGTAATAGACACTGAAGTTACAGCATTTTCCAATGGCCAG
CTTCCGCAGCAAAAGCTAGTCTTCAGGAGACTTGATACCAGTTCGGATGC
TTCTGCTGCAGATAACCAAGAAGCTTTCTCACAGACAGCATAAATGTCTG
TCCAATGTGTTTAATTTTACCAAATTATATTTGTGTTCAGCAAAATTATG
AGCGAATTTTCTTAACTGATAGGCTGTAACCTGCTTCTTGTATATGATGA
TGCTTTATACAAAATCATAAGCCTTGAAGAGTTTCTTTTTCAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
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