FC872870

Overview
NameFC872870
Unique NameFC872870
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_PHOPR (Chaperone protein clpB OS=Photobacterium profundum GN=clpB PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 2.975e-19
Identity = 41/98 (41.84%), Postives = 66/98 (67.35%), Query Frame = 3
Query:    3 VDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFK 296
            ++     FRPEF+NRVDE +VF PL ++ I  I  +Q++R+  R+ ++  ++ V ++A+  +   G+DP YG RP+KR IQQY+EN LA+ IL G+ +
Sbjct:  742 LEVVSQYFRPEFINRVDETVVFHPLGQENIKHIASIQIERLVNRLKEKDYELTVQESALDFVAKAGFDPVYGARPLKRAIQQYIENPLAQEILSGKLE 839          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_DESVH (Chaperone protein clpB OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=clpB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.975e-19
Identity = 46/113 (40.71%), Postives = 72/113 (63.72%), Query Frame = 3
Query:    3 VDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFS 341
            ++  R  FRPEF+NRVDE ++F+PL   QI+ IV L L R++ R+A+RK+ +++ D A   +    YDP YG RP++R +Q  +E  LA+ ++ GE +D  T+ +D    A S
Sbjct:  749 MEELRRHFRPEFLNRVDETVLFKPLLPAQIARIVELLLGRLRGRLAERKIDIRLGDVARDFIAKAAYDPVYGARPLRRYLQHNIETPLARKLIAGELRDGTTVEVDVVDDALS 861          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: HS101_ARATH (Heat shock protein 101 OS=Arabidopsis thaliana GN=HSP101 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 3.886e-19
Identity = 44/102 (43.14%), Postives = 67/102 (65.69%), Query Frame = 3
Query:   15 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 320
            R  FRPE +NR+DE +VF PL  DQ+  + RLQ+  V  R+A+R + + VTDAA+  + +  YDP YG RP++R +++ V  EL+K ++R E  +  T+ ID
Sbjct:  748 RKHFRPELLNRLDEIVVFDPLSHDQLRKVARLQMKDVAVRLAERGVALAVTDAALDYILAESYDPVYGARPIRRWMEKKVVTELSKMVVREEIDENSTVYID 849          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_RHOPA (Chaperone protein clpB OS=Rhodopseudomonas palustris GN=clpB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.886e-19
Identity = 53/116 (45.69%), Postives = 73/116 (62.93%), Query Frame = 3
Query:   15 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE--VTAFSNGQLP 356
            R+ FRPEF+NRVDE I+F  L + ++  IV +Q  R+ K + DRK+ + +  AA   L   G+DP YG RP+KRVIQ+ V++ LA+ IL G  KD D + I  E  V  F NG+ P
Sbjct:  747 RAHFRPEFLNRVDEIILFHRLQKSEMGRIVDIQFARLTKLLEDRKIVLDLDAAARDWLAEKGWDPAYGARPLKRVIQRSVQDPLAEMILEGSVKDGDHVAISAEGGVLTF-NGKPP 861          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: HS101_ORYSJ (Heat shock protein 101 OS=Oryza sativa subsp. japonica GN=HSP101 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.075e-19
Identity = 43/102 (42.16%), Postives = 69/102 (67.65%), Query Frame = 3
Query:   15 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 320
            R  FRPE +NR+DE ++F PL  +Q+  + RLQ+  V  R+A+R + + VTDAA+ ++ SL YDP YG RP++R I++ V  +L+K +++ E  +  T+ ID
Sbjct:  749 RRHFRPELLNRLDEIVIFDPLSHEQLRKVARLQMKDVAVRLAERGVALAVTDAALDVILSLSYDPVYGARPIRRWIEKRVVTQLSKMLIQEEIDENCTVYID 850          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_RICCN (Chaperone protein clpB OS=Rickettsia conorii GN=clpB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.075e-19
Identity = 41/108 (37.96%), Postives = 76/108 (70.37%), Query Frame = 3
Query:    3 VDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 326
            ++  +++F+PEF+NR+DE I+F  L+R+ I  IV++QL+ ++K +  + + ++  ++A+  L   GYDP++G RP+KR+IQ+ ++N LAK IL GE     T+ I+++
Sbjct:  741 MEYVKAVFKPEFLNRLDEIILFHRLNRNNIHDIVKIQLESLKKILLAQNIILEFDESALNYLAEKGYDPSFGARPLKRLIQREIQNNLAKMILAGEISSGKTVKINSK 848          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_MYCTU (Chaperone protein clpB OS=Mycobacterium tuberculosis GN=clpB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.075e-19
Identity = 43/111 (38.74%), Postives = 78/111 (70.27%), Query Frame = 3
Query:    9 AARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFS 341
            A R+ F+PEF+NR+D+ ++F+ L+ +++  IV +QL ++ KR+A R++++QV+  A + L   G+DP YG RP++R++QQ + ++LAK +L G+  D DT+ ++    A S
Sbjct:  734 AVRATFKPEFINRLDDVLIFEGLNPEELVRIVDIQLAQLGKRLAQRRLQLQVSLPAKRWLAQRGFDPVYGARPLRRLVQQAIGDQLAKMLLAGQVHDGDTVPVNVSPDADS 844          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_MYCBO (Chaperone protein clpB OS=Mycobacterium bovis GN=clpB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.075e-19
Identity = 43/111 (38.74%), Postives = 78/111 (70.27%), Query Frame = 3
Query:    9 AARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFS 341
            A R+ F+PEF+NR+D+ ++F+ L+ +++  IV +QL ++ KR+A R++++QV+  A + L   G+DP YG RP++R++QQ + ++LAK +L G+  D DT+ ++    A S
Sbjct:  734 AVRATFKPEFINRLDDVLIFEGLNPEELVRIVDIQLAQLGKRLAQRRLQLQVSLPAKRWLAQRGFDPVYGARPLRRLVQQAIGDQLAKMLLAGQVHDGDTVPVNVSPDADS 844          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_OCEIH (Chaperone protein clpB OS=Oceanobacillus iheyensis GN=clpB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.629e-19
Identity = 40/105 (38.10%), Postives = 72/105 (68.57%), Query Frame = 3
Query:    3 VDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVI 317
            ++  +  FRPEF+NR+DE IVF  L+++ +  IV L + ++QKR+ ++ + + +TD AI+ + + G+DP YG RP++R IQ+ +E+ L++ +LRG  + E  + I
Sbjct:  693 IEELKKAFRPEFLNRIDETIVFHSLEKEHMKDIVTLMVQQLQKRLKEQDLHLSLTDKAIEKIANEGFDPEYGARPLRRSIQKNIEDLLSEELLRGAIEKEQQVKI 797          
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_CLOPE (Chaperone protein clpB OS=Clostridium perfringens GN=clpB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.629e-19
Identity = 44/99 (44.44%), Postives = 65/99 (65.66%), Query Frame = 3
Query:   24 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 320
            F+PEF+NRVD+ I+F+PL  + I  I+ + L  V+ R+ +R + ++VTD A ++L   GYDP YG RP+KR I   +E E+AK I+ GE  D    +ID
Sbjct:  757 FKPEFLNRVDDIIMFRPLSSEGIKKIIDIFLRDVENRLRERNITLEVTDRAKEILAEEGYDPVYGARPLKRYISNVLETEIAKKIIAGEIYDGSVALID 855          
The following BLAST results are available for this feature:
BLAST of FC872870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
CLPB_PHOPR2.975e-1941.84Chaperone protein clpB OS=Photobacterium profundum... [more]
CLPB_DESVH2.975e-1940.71Chaperone protein clpB OS=Desulfovibrio vulgaris (... [more]
HS101_ARATH3.886e-1943.14Heat shock protein 101 OS=Arabidopsis thaliana GN=... [more]
CLPB_RHOPA3.886e-1945.69Chaperone protein clpB OS=Rhodopseudomonas palustr... [more]
HS101_ORYSJ5.075e-1942.16Heat shock protein 101 OS=Oryza sativa subsp. japo... [more]
CLPB_RICCN5.075e-1937.96Chaperone protein clpB OS=Rickettsia conorii GN=cl... [more]
CLPB_MYCTU5.075e-1938.74Chaperone protein clpB OS=Mycobacterium tuberculos... [more]
CLPB_MYCBO5.075e-1938.74Chaperone protein clpB OS=Mycobacterium bovis GN=c... [more]
CLPB_OCEIH6.629e-1938.10Chaperone protein clpB OS=Oceanobacillus iheyensis... [more]
CLPB_CLOPE6.629e-1944.44Chaperone protein clpB OS=Clostridium perfringens ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3DA11ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3DA11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872870 ID=FC872870; Name=FC872870; organism=Citrus clementina; type=EST; length=620bp
GGGTGGATGCTGCAAGATCAATATTCCGCCCCGAGTTCATGAACCGAGTA
GATGAGTATATAGTATTCCAACCACTGGACCGTGACCAGATAAGCAGTAT
TGTGAGGTTACAGTTGGATCGGGTGCAGAAGAGGATTGCAGACCGGAAGA
TGAAAATGCAAGTGACCGATGCAGCTATTCAGCTCCTTGGGAGTCTTGGG
TATGACCCCAACTATGGTGGAAGGCCGGTCAAGAGAGTGATTCAGCAGTA
CGTTGAAAATGAGCTTGCCAAGGGCATTCTGAGAGGGGAGTTCAAGGATG
AAGACACAATTGTAATAGACACTGAAGTTACAGCATTTTCCAATGGCCAG
CTTCCGCAGCAAAAGCTAGTCTTCAGGAGACTTGATACCAGTTCGGATGC
TTCTGCTGCAGATAACCAAGAAGCTTTCTCACAGACAGCATAAATGTCTG
TCCAATGTGTTTAATTTTACCAAATTATATTTGTGTTCAGCAAAATTATG
AGCGAATTTTCTTAACTGATAGGCTGTAACCTGCTTCTTGTATATGATGA
TGCTTTATACAAAATCATAAGCCTTGAAGAGTTTCTTTTTCAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
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