FC872870
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_RICTY (Chaperone protein clpB OS=Rickettsia typhi GN=clpB PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 8.657e-19 Identity = 42/104 (40.38%), Postives = 72/104 (69.23%), Query Frame = 3 Query: 15 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 326 R++F+PEF+NR+DE I+F L+R+ I IV++QL ++K + + + ++ ++A+ L GYDP++G RP+KR+IQ+ ++N LAK IL G+ +T+ I E Sbjct: 745 RAVFKPEFLNRLDEIILFHRLNRNNIYDIVKIQLGSLKKILLQQNIILEFNESALNYLAEKGYDPSFGARPLKRLIQREIQNNLAKMILAGKISSGNTVKIARE 848
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_RHILO (Chaperone protein clpB OS=Rhizobium loti GN=clpB PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 8.657e-19 Identity = 45/101 (44.55%), Postives = 67/101 (66.34%), Query Frame = 3 Query: 15 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVI 317 R+ FRPEF+NRVDE I+F L R + IV +Q R++ + DRK+ + + AI+ L + GYDP YG RP+KRV+Q+ +++ LA+ IL GE D T+ + Sbjct: 746 RASFRPEFLNRVDEVILFHRLRRKDMDRIVEIQFKRLESLLVDRKITLSLDHEAIEWLAAKGYDPAYGARPLKRVMQKELQDPLAEKILLGEILDGSTVKV 846
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: HSP98_NEUCR (Heat shock protein hsp98 OS=Neurospora crassa GN=hsp98 PE=1 SV=2) HSP 1 Score: 92.4337 bits (228), Expect = 1.929e-18 Identity = 48/119 (40.34%), Postives = 76/119 (63.87%), Query Frame = 3 Query: 3 VDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIAD--RKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDED---TIVIDTEVTAFSN 344 ++A R+ F PEF+NR+ ++F L R +I IV L++ +QKR+ D R +K++V++ A LG+LGY P YG RP++RV+++ V N LA ILRG +D + +V D ++T N Sbjct: 774 MNALRNYFLPEFLNRISSIVIFNRLTRREIRKIVELRIAEIQKRLQDNDRNVKIEVSEEAKDKLGALGYSPAYGARPLQRVLEKEVLNRLAVLILRGSIRDGEVARVVVQDGKITVLPN 892
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB1_CHLTE (Probable chaperone protein clpB 1 OS=Chlorobium tepidum GN=clpB1 PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.929e-18 Identity = 39/100 (39.00%), Postives = 69/100 (69.00%), Query Frame = 3 Query: 27 RPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 326 RPEF+NR+DE I+F PL R+ + IV +Q +R+++ +++ ++++D A+ L G+DP +G RP+KRV+Q+ + N L++ IL G+ ++DT+ I E Sbjct: 330 RPEFLNRIDEVILFTPLTRENLREIVTIQFNRIKETARRQRITLEISDEALMWLAKTGFDPAFGARPLKRVMQRQITNRLSEMILAGQVGEDDTVEIGLE 429
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_PROMA (Chaperone protein clpB OS=Prochlorococcus marinus GN=clpB PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 3.290e-18 Identity = 38/102 (37.25%), Postives = 71/102 (69.61%), Query Frame = 3 Query: 15 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 320 ++ F+PEF+NR+DE I+F+ L ++ + IV+LQ+D+V+ R+ D+ +++++ + I + GY+P YG RP+KR+IQ +E +LAK IL+ + ++ +D Sbjct: 754 KNYFKPEFLNRLDEQIIFKSLKKEDLKKIVKLQIDKVKARLKDKGLEIELNEKVIDWIADKGYNPIYGARPIKRIIQTKLETKLAKMILKSKSEERSHYQLD 855
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_TROWT (Chaperone protein clpB OS=Tropheryma whipplei (strain Twist) GN=clpB PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 4.297e-18 Identity = 44/105 (41.90%), Postives = 66/105 (62.86%), Query Frame = 3 Query: 6 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 320 D R FRPEF+NR+DE ++F+PL + I IV L ++ + KRI DR++ + V++ + L GYD YG RP++R+IQ+ +E+ LAK I+ G D T D Sbjct: 589 DEVRRTFRPEFLNRLDEIVIFEPLSQSDICQIVDLNIESLNKRIKDRRIVVTVSEDLRRWLSKSGYDVIYGARPLRRLIQREIEDRLAKLIIEGLIHDGQTASFD 693
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPB_TROW8 (Chaperone protein clpB OS=Tropheryma whipplei (strain TW08/27) GN=clpB PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 4.297e-18 Identity = 44/105 (41.90%), Postives = 66/105 (62.86%), Query Frame = 3 Query: 6 DAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVID 320 D R FRPEF+NR+DE ++F+PL + I IV L ++ + KRI DR++ + V++ + L GYD YG RP++R+IQ+ +E+ LAK I+ G D T D Sbjct: 583 DEVRRTFRPEFLNRLDEIVIFEPLSQSDICQIVDLNIESLNKRIKDRRIVVTVSEDLRRWLSKSGYDVIYGARPLRRLIQREIEDRLAKLIIEGLIHDGQTASFD 687
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPC_BACSU (Negative regulator of genetic competence clpC/mecB OS=Bacillus subtilis GN=clpC PE=1 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 9.572e-18 Identity = 42/101 (41.58%), Postives = 67/101 (66.34%), Query Frame = 3 Query: 24 FRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 326 FRPEF+NR+DE IVF L++ ++ IV L D++ KR+ ++ + +++TDAA + G D YG RP++R IQ++VE+ L++ +LRG IV+D E Sbjct: 697 FRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIHKGQHIVLDVE 797
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: HS104_SCHPO (Heat shock protein 104 OS=Schizosaccharomyces pombe GN=hsp104 PE=2 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.250e-17 Identity = 46/104 (44.23%), Postives = 67/104 (64.42%), Query Frame = 3 Query: 3 VDAARSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIAD--RKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDT 308 +++ R FRPEF+NR+ ++F L R I +IV ++ VQKR+ R +K++V+D A LLGS GY P YG RP+ RVIQ V N +A IL G+ +D++T Sbjct: 761 MNSIRGFFRPEFLNRISSIVIFNRLRRVDIRNIVENRILEVQKRLQSNHRSIKIEVSDEAKDLLGSAGYSPAYGARPLNRVIQNQVLNPMAVLILNGQLRDKET 864
BLAST of FC872870 vs. ExPASy Swiss-Prot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.633e-17 Identity = 40/104 (38.46%), Postives = 68/104 (65.38%), Query Frame = 3 Query: 15 RSIFRPEFMNRVDEYIVFQPLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGGRPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 326 + FRPEF+NRVDE IVF+ L +D++ I + L + +R+ + + +QVT+ LL GY+P+YG RP++R + + +E+ LA+ +L G+ K+ D +ID + Sbjct: 731 KQYFRPEFLNRVDEIIVFRQLTKDEVRDIAHIMLREIFERVKQQGISLQVTERFKNLLIEEGYNPSYGARPLRRALVRLLEDSLAEEVLSGKIKEGDNAMIDVD 834 The following BLAST results are available for this feature:
BLAST of FC872870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 175
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Sequences
The
following sequences are available for this feature:
EST sequence >FC872870 ID=FC872870; Name=FC872870; organism=Citrus clementina; type=EST; length=620bpback to top |