FC872871

Overview
NameFC872871
Unique NameFC872871
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length899
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872871 vs. ExPASy Swiss-Prot
Match: FAD5C_DICDI (Probable Delta(5) fatty acid desaturase C OS=Dictyostelium discoideum GN=DDB_G0294553 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.967e-13
Identity = 63/229 (27.51%), Postives = 104/229 (45.41%), Query Frame = 3
Query:  216 KKYITAEELRTHNKAED-LWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAFIAYHPGTAWQYLDKLFTGYFVQDFEVSEISKDYRRLYIEFAK---------QGMFEKKQHVASCALTCVALMFVVVVYGVLCCESVWAHLG------SGMLLGFLW-----IQSAYVGHDSGHYQVMTSPKFNKIAQLISGNCLTGISIAWWKWTH-NAHHIACNSLDYDPDL 836
            KK  + +E+  HN  E+ +WISI G VYD+T++ K HPGG+  L+  AG+DVT+ F +YHP T             ++ +E+ ++S      Y+E +K         +  F+K       A   +A +  + VY  L      +H           LL  ++     + S ++ HD+ H  +  +PK  K     + +   G S  +W   H   HH+  N  + DPD+
Sbjct:    9 KKLYSWKEISKHNTIENGIWISIDGLVYDITKFIKHHPGGEQVLILAAGRDVTNLFESYHPMTD-------LPSKMLKQYEIGQVSTMEFPKYVEKSKFYSTLKERVREHFKKSNKDPKFAFGIIARL--IFVYWFLITSYYVSHYAFIENFYLNCLLAIVYSLSNSLFSLHMMHDACHSAISHNPKVWKWLG-ATYDLFIGASFFYWCNQHVIGHHVYTNIRNADPDI 227          
BLAST of FC872871 vs. ExPASy Swiss-Prot
Match: CYB51_ARATH (Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN=At5g53560 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 5.164e-12
Identity = 39/98 (39.80%), Postives = 54/98 (55.10%), Query Frame = 3
Query:  204 MEAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAF-IAYHPGTAWQYLDKLFTGYFVQDFEVSEISKDYRRLYI 494
            M +++K ++ EE+  HNK +D W+ I GKVYDVT +   HPGGD  LL+  G+D T+ F    H  TA   +DK F G      E+   S    R Y+
Sbjct:    1 MSSDRKVLSFEEVSKHNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFEDVGHSDTARDMMDKYFIG------EIDSSSVPATRTYV 92          
BLAST of FC872871 vs. ExPASy Swiss-Prot
Match: CYB5_BRAOB (Cytochrome b5 OS=Brassica oleracea var. botrytis GN=CYB5 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.563e-11
Identity = 35/78 (44.87%), Postives = 47/78 (60.26%), Query Frame = 3
Query:  204 MEAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAF-IAYHPGTAWQYLDKLFTG 434
            M +EKK +  EE+  HNK +D W+ I GKVYDVT +   HPGGD  LL+  G+D T+ F    H  TA   ++K + G
Sbjct:    1 MASEKKVLGFEEVSQHNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFEDVGHSDTARDMMEKYYIG 78          
BLAST of FC872871 vs. ExPASy Swiss-Prot
Match: CYB5_TOBAC (Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.371e-11
Identity = 35/78 (44.87%), Postives = 45/78 (57.69%), Query Frame = 3
Query:  204 MEAEKKYITAEELRTHNKAEDLWISIQGKVYDVTEWAKQHPGGDVPLLNLAGQDVTDAF-IAYHPGTAWQYLDKLFTG 434
            M  E K  T  E+  HN A+D W+ I GKVYDVT++   HPGGD  LL+  G+D TD F    H  +A   LD+ + G
Sbjct:    1 MGGETKVFTLAEVSQHNNAKDCWLVISGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSARAMLDEYYVG 78          
The following BLAST results are available for this feature:
BLAST of FC872871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
FAD5C_DICDI7.967e-1327.51Probable Delta(5) fatty acid desaturase C OS=Dicty... [more]
CYB51_ARATH5.164e-1239.80Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN... [more]
CYB5_BRAOB2.563e-1144.87Cytochrome b5 OS=Brassica oleracea var. botrytis G... [more]
CYB5_TOBAC4.371e-1144.87Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2AD01ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2AD01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872871 ID=FC872871; Name=FC872871; organism=Citrus clementina; type=EST; length=899bp
CGCGCCGGGGGCTCCGAAGAGACACAGAGAGGGAAAAAATAAAAATAGAG
ATCTCAAAAACCGAAAGCAAACCAAATCATCACATCCCTTGCTATTTCAC
TTTGAGCAAAACTTGCGGGATTTTCTTGATTTGATTTTGCTTCCCAGGTG
GCATAACCTATCTTCCCCCACAACACTTTCCAATTTTTCAATCTGCTGCC
TTAATGGAGGCCGAGAAAAAATACATAACGGCTGAAGAGCTTAGAACCCA
CAACAAGGCAGAAGATTTGTGGATCTCTATACAGGGGAAAGTTTACGACG
TTACAGAATGGGCAAAACAACATCCTGGCGGCGACGTTCCGCTCTTGAAT
TTGGCTGGCCAAGATGTAACCGATGCGTTTATAGCGTATCATCCAGGAAC
CGCTTGGCAATATCTTGATAAACTTTTTACAGGCTATTTTGTTCAAGATT
TCGAAGTATCTGAAATCTCAAAAGATTACAGGAGACTGTACATTGAGTTT
GCCAAACAGGGTATGTTTGAAAAGAAACAACACGTGGCATCCTGTGCCCT
TACATGTGTAGCATTGATGTTTGTTGTTGTGGTTTATGGCGTTTTGTGCT
GTGAGAGCGTCTGGGCTCATTTGGGTTCAGGCATGTTGTTGGGGTTTCTT
TGGATTCAAAGTGCTTATGTTGGTCACGATTCCGGGCATTATCAGGTTAT
GACAAGTCCTAAGTTTAACAAAATTGCTCAGCTTATTTCAGGAAATTGTT
TAACAGGAATCAGCATTGCTTGGTGGAAGTGGACTCACAATGCCCACCAC
ATTGCTTGCAACAGCCTTGATTACGATCCAGATCTTCAACACATCCCAGT
TTTTGCGGTATCTACGCGTTTATTTAATTCAATTACATCTGTCTTCTAT
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