FC872875

Overview
NameFC872875
Unique NameFC872875
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.109e-25
Identity = 47/89 (52.81%), Postives = 65/89 (73.03%), Query Frame = 3
Query:    3 APKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 269
            +PKPSCH+VI   W+PS  +  A R+PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  ++
Sbjct:  230 SPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 318          
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.109e-25
Identity = 47/89 (52.81%), Postives = 65/89 (73.03%), Query Frame = 3
Query:    3 APKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 269
            +PKPSCH+VI   W+PS  +  A R+PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  ++
Sbjct:  228 SPKPSCHDVITGRWQPSGTDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 316          
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.448e-25
Identity = 51/89 (57.30%), Postives = 62/89 (69.66%), Query Frame = 3
Query:    3 APKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 269
            +PKPSCH+VII  W PS  +  AGR+PG+GL TNIINGG+ECGQG N  V +RIGF+  +C   G+  G+NLDCYNQR Y       SM
Sbjct:  233 SPKPSCHDVIIGAWSPSGSDQAAGRVPGFGLITNIINGGLECGQGWNAKVEDRIGFYKRYCDTLGVGYGNNLDCYNQRSYNNGPSVDSM 321          
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.892e-25
Identity = 48/89 (53.93%), Postives = 67/89 (75.28%), Query Frame = 3
Query:    3 APKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 269
            +PKPSCH+VII  W PS+ +  A RLPG+G+ TNIINGG+ECG+G ++ V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  ++
Sbjct:  240 SPKPSCHDVIIGRWNPSSADRAANRLPGFGVITNIINGGLECGRGTDNRVQDRIGFYRRYCSILGVTPGDNLDCVNQRWFGNALLVDTL 328          
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.471e-25
Identity = 49/79 (62.03%), Postives = 60/79 (75.95%), Query Frame = 3
Query:    9 KPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYG 245
            KPS H+VII  W PSA +  A R+PGYG+ TNIINGGIECG G NDAV +RIG++  +CG   + PG+NLDCYNQR +G
Sbjct:  173 KPSSHDVIIGRWTPSAADQAANRVPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNVAPGENLDCYNQRNFG 251          
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.471e-25
Identity = 47/89 (52.81%), Postives = 64/89 (71.91%), Query Frame = 3
Query:    3 APKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 269
            +PKPSCH+VI   W+PS  +  A R+PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PG+NLDC NQR +G  L+   M
Sbjct:  234 SPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGENLDCGNQRSFGNGLLVDIM 322          
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 3.227e-25
Identity = 48/79 (60.76%), Postives = 60/79 (75.95%), Query Frame = 3
Query:    6 PKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 242
            PKPSCH VI  +W+PS  +  AGRLPGYG+ TNIINGG+ECG+G +  V +RIGF+  +C  FG+ PG NLDCYNQR +
Sbjct:  248 PKPSCHAVIAGQWQPSDADRAAGRLPGYGVITNIINGGLECGRGQDGRVADRIGFYQRYCNIFGVNPGGNLDCYNQRSF 326          
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.214e-25
Identity = 47/89 (52.81%), Postives = 64/89 (71.91%), Query Frame = 3
Query:    3 APKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 269
            +PKPSCH+VI   W PSA +  A RLPGYG+ TNIINGG+ECG G +  V++RIGF+  +C   G+ PGDN+DC NQ+ +   L+ ++M
Sbjct:  246 SPKPSCHDVITGRWTPSAADRAANRLPGYGVITNIINGGLECGHGSDARVQDRIGFYRRYCSILGVSPGDNIDCGNQKSFNSGLLLETM 334          
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 5.504e-25
Identity = 48/78 (61.54%), Postives = 57/78 (73.08%), Query Frame = 3
Query:    9 KPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 242
            KPS H+VI   W PS  +  AGR PGYG+ TNI+NGG+ECG G +D V NRIGF+  +CG FGI  G NLDCYNQRP+
Sbjct:  252 KPSSHDVITGRWAPSPADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDCYNQRPF 329          
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 9.388e-25
Identity = 49/89 (55.06%), Postives = 62/89 (69.66%), Query Frame = 3
Query:    3 APKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 269
            +PKPSCH VII  W PS+ +  AGR  GYG+ TNIINGG+ECG+G N  V +RIGF+  +C   G+  G+NLDCYNQ P+G  +   SM
Sbjct:  214 SPKPSCHNVIIGAWSPSSSDRAAGRATGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFGNGVSVDSM 302          
The following BLAST results are available for this feature:
BLAST of FC872875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
CHI3_SOLTU1.109e-2552.81Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_SOLTU1.109e-2552.81Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHI1_THECC1.448e-2557.30Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHIT_SOLTU1.892e-2553.93Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHIQ_TOBAC2.471e-2562.03Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHIC_SOLLC2.471e-2552.81Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHIB_ARATH3.227e-2560.76Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI3_TOBAC4.214e-2552.81Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI2_ORYSJ5.504e-2561.54Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_GOSHI9.388e-2555.06Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2AD05ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2AD05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872875 ID=FC872875; Name=FC872875; organism=Citrus clementina; type=EST; length=467bp
GGGCACCAAAGCCATCGTGCCACGAAGTCATTATCGACGAATGGAAACCA
TCAGCAATTGAAGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCAC
AAATATAATCAACGGTGGAATTGAATGTGGCCAAGGTGGGAATGACGCTG
TACGCAACCGTATTGGGTTCTTTACCACTTTCTGTGGCAAGTTTGGGATT
CAGCCTGGTGACAATCTTGATTGCTACAACCAACGGCCTTATGGCCTTAA
TCTGATGGCACAATCTATGTGATCATCATGATCAAGGTTTTAGTAAAATA
AGCTTAATAAAAGCTACTTAATAAAAACTTTAGATGTCACAGTTGTAGGT
GGACAACTAAATTATTCGTTTGTTACGCTCTTATTGCAAGTAAATTAAAT
AAGACTGATCCAACATGGATCAATGAGTCTTCTCCAGCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA
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