FC872875

Overview
NameFC872875
Unique NameFC872875
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.226e-24
Identity = 46/80 (57.50%), Postives = 61/80 (76.25%), Query Frame = 3
Query:    3 APKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 242
            +PKPSCH VI+ +W+PS  +  AGR+PGYG+ TNIINGG+ECG+G +  V +RIGF+  +C   G+ PG NLDCYNQR +
Sbjct:  232 SPKPSCHAVIVGQWQPSDADRAAGRVPGYGVITNIINGGLECGRGQDARVADRIGFYQRYCNILGVNPGGNLDCYNQRSF 311          
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.567e-24
Identity = 48/92 (52.17%), Postives = 66/92 (71.74%), Query Frame = 3
Query:    3 APKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM*SS 278
            +PKPS H+VI   W PS+ +V A RLPGYG  TNIINGG+ECG+G +  V++RIGFF  +C   G+  G+NLDCY+Q P+G +L+   + +S
Sbjct:  236 SPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLLLSDLVTS 327          
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 6.085e-24
Identity = 48/92 (52.17%), Postives = 65/92 (70.65%), Query Frame = 3
Query:    3 APKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM*SS 278
            +PKPS H+VI   W PS+ +V A RLPGYG  TNIINGG+ECG+G +  V++RIGFF  +C   G+  G+NLDCY+Q P+G +L    + +S
Sbjct:  235 SPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLFLSDLVTS 326          
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 7.948e-24
Identity = 46/78 (58.97%), Postives = 58/78 (74.36%), Query Frame = 3
Query:    9 KPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 242
            KPSCH+VI  +W PSA + +A R PGYG+ TNIINGGIECG+G N  V +RIGF+  +C    + PGDNLDCY+QR +
Sbjct:  167 KPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLDCYDQRNF 244          
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.038e-23
Identity = 44/80 (55.00%), Postives = 58/80 (72.50%), Query Frame = 3
Query:    3 APKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 242
            +PKPSCH V+  +W P+  +  AGR+PGYG+ TNIINGG+ECG G +  V +RIGF+  +C   G+  G NLDCYNQRP+
Sbjct:  242 SPKPSCHAVMTGQWTPNGNDQAAGRVPGYGVVTNIINGGVECGHGADSRVADRIGFYKRYCDMLGVSYGANLDCYNQRPF 321          
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.356e-23
Identity = 46/81 (56.79%), Postives = 59/81 (72.84%), Query Frame = 3
Query:    3 APKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYG 245
            +PKPSCH V   +W PSA +  AGR+PGYG+ TNIINGG+ECG G +D V +RIGF+  +C   G+    NLDCY+QRP+G
Sbjct:  245 SPKPSCHAVATGQWTPSADDQAAGRVPGYGVITNIINGGLECGHGEDDRVADRIGFYKRYCDILGVSYDANLDCYSQRPFG 325          
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.312e-23
Identity = 47/78 (60.26%), Postives = 57/78 (73.08%), Query Frame = 3
Query:    9 KPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 242
            KPS H+VII  W PSA + +A R PG G+ TNIINGGIECG G N AV +RIG++  +CG   + PGDNLDCYNQR +
Sbjct:  173 KPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNVAPGDNLDCYNQRNF 250          
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.312e-23
Identity = 47/78 (60.26%), Postives = 57/78 (73.08%), Query Frame = 3
Query:    9 KPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 242
            KPSCH+VI+  W PSA +  AGR+PGYG+ TNIINGGIECG G NDA  +RIG++  +C   G   G NLDCYNQR +
Sbjct:  182 KPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQNDANVDRIGYYKRYCDMLGAGYGSNLDCYNQRNF 259          
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 3.944e-23
Identity = 46/89 (51.69%), Postives = 63/89 (70.79%), Query Frame = 3
Query:    3 APKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 269
            +PKPSCH VI   W PS  + +AGRLPG+G+ TNIINGG+ECG+G    V++RIGF+  +C    +  G+NLDC NQRP+G  L+  ++
Sbjct:  226 SPKPSCHNVITGGWTPSGADRSAGRLPGFGVITNIINGGVECGKGVVPQVQDRIGFYKRYCDILRVSYGNNLDCNNQRPFGSGLLLDTI 314          
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 5.151e-23
Identity = 46/80 (57.50%), Postives = 59/80 (73.75%), Query Frame = 3
Query:    3 APKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 242
            A KPS H+VI   W PSA + +AGR+PGYG+ TNIINGGIECG G ++ V +R+GF+  +C  FG+ PG NLDC NQR +
Sbjct:  240 ANKPSSHDVITGRWTPSAADSSAGRVPGYGVITNIINGGIECGHGQDNRVDDRVGFYKRYCQIFGVDPGGNLDCNNQRSF 319          
The following BLAST results are available for this feature:
BLAST of FC872875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
CHI2_BRANA1.226e-2457.50Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHIT_PHAVU3.567e-2452.17Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI5_PHAVU6.085e-2452.17Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHIB_SOLLC7.948e-2458.97Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI1_ORYSJ1.038e-2355.00Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI12_ORYSJ1.356e-2356.79Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIP_TOBAC2.312e-2360.26Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHI8_ORYSJ2.312e-2360.26Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_VITVI3.944e-2351.69Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHIX_PEA5.151e-2357.50Endochitinase OS=Pisum sativum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2AD05ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2AD05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872875 ID=FC872875; Name=FC872875; organism=Citrus clementina; type=EST; length=467bp
GGGCACCAAAGCCATCGTGCCACGAAGTCATTATCGACGAATGGAAACCA
TCAGCAATTGAAGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCAC
AAATATAATCAACGGTGGAATTGAATGTGGCCAAGGTGGGAATGACGCTG
TACGCAACCGTATTGGGTTCTTTACCACTTTCTGTGGCAAGTTTGGGATT
CAGCCTGGTGACAATCTTGATTGCTACAACCAACGGCCTTATGGCCTTAA
TCTGATGGCACAATCTATGTGATCATCATGATCAAGGTTTTAGTAAAATA
AGCTTAATAAAAGCTACTTAATAAAAACTTTAGATGTCACAGTTGTAGGT
GGACAACTAAATTATTCGTTTGTTACGCTCTTATTGCAAGTAAATTAAAT
AAGACTGATCCAACATGGATCAATGAGTCTTCTCCAGCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA
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