FC872875

Overview
NameFC872875
Unique NameFC872875
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 5.151e-23
Identity = 46/80 (57.50%), Postives = 57/80 (71.25%), Query Frame = 3
Query:    3 APKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 242
            APKPS H VI  +W PS  +  AGR PG+G+ TNIINGG+ECG G +  V +RIGF+  +C   G+  GDNLDCYNQRP+
Sbjct:  186 APKPSSHAVITGKWSPSGADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVGYGDNLDCYNQRPF 265          
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 6.728e-23
Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 3
Query:    6 PKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYG 245
            PKPS H+VI   W PS  +   GR+PG+G+ TNIINGG+EC  G N  + NRIGF+  +C   G+ PG+NLDC NQRP+G
Sbjct:  167 PKPSAHDVITGRWSPSVADSAPGRVPGFGVITNIINGGMECNSGSNALMDNRIGFYRRYCQILGVDPGNNLDCANQRPFG 246          
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.958e-22
Identity = 45/78 (57.69%), Postives = 56/78 (71.79%), Query Frame = 3
Query:    9 KPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 242
            KPSCH+VI   W PSA + +A R+PGYG+ TNIINGGIECG+G N  V +RIG++        + PGDNLDCYNQR +
Sbjct:  174 KPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYYRRNVSIMNVAPGDNLDCYNQRNF 251          
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 104.375 bits (259), Expect = 2.557e-22
Identity = 44/80 (55.00%), Postives = 58/80 (72.50%), Query Frame = 3
Query:    3 APKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 242
            APKPS H VI  +W PS  +  AGR+PG+G+ TNI+NGGIECG G +  V +RIGF+  +C   G+  G+NLDCY+QRP+
Sbjct:  238 APKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 317          
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.361e-22
Identity = 43/78 (55.13%), Postives = 55/78 (70.51%), Query Frame = 3
Query:    9 KPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 242
            KPSCH VII +W PS  +  A R+PGYG+ TNIINGG+EC  G N AV +RIGF+  +CG   +  G+NLDC NQ+ +
Sbjct:  173 KPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.696e-22
Identity = 44/80 (55.00%), Postives = 57/80 (71.25%), Query Frame = 3
Query:    3 APKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 242
            APKPS H VI  +W PS  +  AGR+PG+G+ TNI+NGGIECG G +  V +RIGF+  +C    +  G+NLDCYNQRP+
Sbjct:  241 APKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILRVGYGNNLDCYNQRPF 320          
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.696e-22
Identity = 44/79 (55.70%), Postives = 57/79 (72.15%), Query Frame = 3
Query:    6 PKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 242
            PKPS H VI  +W PS  +  AGR+PG+G+ TNIINGGIECG G +  V +RIGF+  +C   G+  G+NLDCY+QRP+
Sbjct:  187 PKPSSHAVIAGQWSPSGADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 265          
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 9.715e-22
Identity = 42/82 (51.22%), Postives = 61/82 (74.39%), Query Frame = 3
Query:    3 APKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQG-GNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYG 245
            +PKPSCH+VI ++W PS  + ++GRLPGYG+ TNIINGG ECG+G   D  ++R+G++  +C  F +  GDN+ C +Q+PYG
Sbjct:  173 SPKPSCHDVITNQWTPSGDDRSSGRLPGYGMATNIINGGEECGKGYSTDNAKDRVGYYKRYCDMFRVGYGDNIACRDQKPYG 254          
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 6.297e-21
Identity = 42/78 (53.85%), Postives = 53/78 (67.95%), Query Frame = 3
Query:    9 KPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 242
            KPSCH VII +W PS  +  A R+PGYG+ TNIING  ECG G N A  +RIGF+  +CG   +  G+NLDC NQ+ +
Sbjct:  173 KPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.551e-19
Identity = 38/78 (48.72%), Postives = 55/78 (70.51%), Query Frame = 3
Query:    9 KPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 242
            KPSCH+V++ E++P   +V A R  G+GL TNI+NGG+EC + G+  V NRIGF+  +C   G+  G NLDC +Q+P+
Sbjct:  213 KPSCHQVMVGEYRPGPADVAANRTAGFGLVTNIVNGGLECNRAGDARVNNRIGFYRRYCQVLGVDVGPNLDCEHQQPF 290          
The following BLAST results are available for this feature:
BLAST of FC872875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
CHIC_SECCE5.151e-2357.50Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHID_SOLLC6.728e-2355.00Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHIT_PETHY1.958e-2257.69Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHI1_HORVU2.557e-2255.0026 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHIA_SOLCI4.361e-2255.13Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHIA_SECCE5.696e-2255.00Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI2_HORVU5.696e-2255.7026 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHI11_ORYSJ9.715e-2251.22Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIA_SOLLC6.297e-2153.85Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI10_ORYSJ1.551e-1948.72Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB2AD05ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2AD05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872875 ID=FC872875; Name=FC872875; organism=Citrus clementina; type=EST; length=467bp
GGGCACCAAAGCCATCGTGCCACGAAGTCATTATCGACGAATGGAAACCA
TCAGCAATTGAAGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCAC
AAATATAATCAACGGTGGAATTGAATGTGGCCAAGGTGGGAATGACGCTG
TACGCAACCGTATTGGGTTCTTTACCACTTTCTGTGGCAAGTTTGGGATT
CAGCCTGGTGACAATCTTGATTGCTACAACCAACGGCCTTATGGCCTTAA
TCTGATGGCACAATCTATGTGATCATCATGATCAAGGTTTTAGTAAAATA
AGCTTAATAAAAGCTACTTAATAAAAACTTTAGATGTCACAGTTGTAGGT
GGACAACTAAATTATTCGTTTGTTACGCTCTTATTGCAAGTAAATTAAAT
AAGACTGATCCAACATGGATCAATGAGTCTTCTCCAGCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA
back to top