FC872875

Overview
NameFC872875
Unique NameFC872875
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.925e-18
Identity = 37/62 (59.68%), Postives = 50/62 (80.65%), Query Frame = 3
Query:    3 APKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCG 188
            +PKPSCH+VII  W+PSA +  A RLPG+G+ TNIINGG+ECG+G +  V++RIGF+  +CG
Sbjct:  240 SPKPSCHDVIIGRWQPSAADRAANRLPGFGVITNIINGGLECGRGSDSRVQDRIGFYRRYCG 301          
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.990e-18
Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 3
Query:    3 APKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 242
            +PKPS H+VI   W PS+ +  AGR+PGYG+ TNII+GG+ECG+G    V +RIG++            DNLDCYNQ+P+
Sbjct:  131 SPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECGKGQESHVADRIGYYK-----------DNLDCYNQKPF 199          
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.234e-17
Identity = 37/77 (48.05%), Postives = 48/77 (62.34%), Query Frame = 3
Query:   12 PSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 242
            PSCHEVI  EW PS  ++ AGR PG+G+ TNII  G EC + G    +NRI ++  +C    + PGDNL C NQ  +
Sbjct:  228 PSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDMLQVDPGDNLYCDNQETF 304          
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.670e-16
Identity = 36/86 (41.86%), Postives = 54/86 (62.79%), Query Frame = 3
Query:    9 KPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQS 266
            +PS H V+  +W P+  +  AGR PGYGLTTNI+ GG++C  G   A  +R+ F+  +C   G+  G NLDC+ Q P+  ++M+ S
Sbjct:  254 QPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGDIMSAS 337          
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.099e-16
Identity = 36/86 (41.86%), Postives = 53/86 (61.63%), Query Frame = 3
Query:    9 KPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQS 266
            +PS H V+  +W P+  +  AGR PGYGLTTNI+ GG++C  G   A  +R+ F+  +C   G+  G NLDC+ Q P+   +M+ S
Sbjct:  254 QPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGGIMSAS 337          
The following BLAST results are available for this feature:
BLAST of FC872875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
CHI4_SOLTU2.925e-1859.68Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHIT_AVESA4.990e-1850.00Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHI8_POPTR3.234e-1748.05Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHI7_ORYSJ4.670e-1641.86Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI6.099e-1641.86Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB2AD05ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2AD05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872875 ID=FC872875; Name=FC872875; organism=Citrus clementina; type=EST; length=467bp
GGGCACCAAAGCCATCGTGCCACGAAGTCATTATCGACGAATGGAAACCA
TCAGCAATTGAAGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCAC
AAATATAATCAACGGTGGAATTGAATGTGGCCAAGGTGGGAATGACGCTG
TACGCAACCGTATTGGGTTCTTTACCACTTTCTGTGGCAAGTTTGGGATT
CAGCCTGGTGACAATCTTGATTGCTACAACCAACGGCCTTATGGCCTTAA
TCTGATGGCACAATCTATGTGATCATCATGATCAAGGTTTTAGTAAAATA
AGCTTAATAAAAGCTACTTAATAAAAACTTTAGATGTCACAGTTGTAGGT
GGACAACTAAATTATTCGTTTGTTACGCTCTTATTGCAAGTAAATTAAAT
AAGACTGATCCAACATGGATCAATGAGTCTTCTCCAGCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA
back to top