FC872875
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 2.925e-18 Identity = 37/62 (59.68%), Postives = 50/62 (80.65%), Query Frame = 3 Query: 3 APKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCG 188 +PKPSCH+VII W+PSA + A RLPG+G+ TNIINGG+ECG+G + V++RIGF+ +CG Sbjct: 240 SPKPSCHDVIIGRWQPSAADRAANRLPGFGVITNIINGGLECGRGSDSRVQDRIGFYRRYCG 301
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 4.990e-18 Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 3 Query: 3 APKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 242 +PKPS H+VI W PS+ + AGR+PGYG+ TNII+GG+ECG+G V +RIG++ DNLDCYNQ+P+ Sbjct: 131 SPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECGKGQESHVADRIGYYK-----------DNLDCYNQKPF 199
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 3.234e-17 Identity = 37/77 (48.05%), Postives = 48/77 (62.34%), Query Frame = 3 Query: 12 PSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 242 PSCHEVI EW PS ++ AGR PG+G+ TNII G EC + G +NRI ++ +C + PGDNL C NQ + Sbjct: 228 PSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDMLQVDPGDNLYCDNQETF 304
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 4.670e-16 Identity = 36/86 (41.86%), Postives = 54/86 (62.79%), Query Frame = 3 Query: 9 KPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQS 266 +PS H V+ +W P+ + AGR PGYGLTTNI+ GG++C G A +R+ F+ +C G+ G NLDC+ Q P+ ++M+ S Sbjct: 254 QPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGDIMSAS 337
BLAST of FC872875 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 6.099e-16 Identity = 36/86 (41.86%), Postives = 53/86 (61.63%), Query Frame = 3 Query: 9 KPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQS 266 +PS H V+ +W P+ + AGR PGYGLTTNI+ GG++C G A +R+ F+ +C G+ G NLDC+ Q P+ +M+ S Sbjct: 254 QPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGGIMSAS 337 The following BLAST results are available for this feature:
BLAST of FC872875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 45
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Sequences
The
following sequences are available for this feature:
EST sequence >FC872875 ID=FC872875; Name=FC872875; organism=Citrus clementina; type=EST; length=467bpback to top |