FC872882
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC872882 vs. ExPASy Swiss-Prot
Match: GRRA_EMENI (SCF E3 ubiquitin ligase complex F-box protein grrA OS=Emericella nidulans GN=grrA PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.459e-12 Identity = 61/247 (24.70%), Postives = 123/247 (49.80%), Query Frame = 1 Query: 61 LSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDK-VVSTMAELHGWTLEMLNLDGCRKISDASLMAVADNCPL--LCDLDVSKCA-VTDFGIASLAHGNYLNLQILSLSGCSMVSNKSLGALRKLGQTLLGLNPPHCNAISTNS 789 +SD ++ F++ +E L L C ++T +G L+ L+AL + + D L + C L+ L+I C D SL + + C L+ + L+G+ VTD L ++C + + +++L C +T++ V + M L L L L C +I D++ + + + + L LD++ C + D + + + L+ L L+ C ++++++ A+ KLG+ L ++ HC+ I+ ++ Sbjct: 150 VSDGTVVPFSQCN-RIERLTLTNCRKLTDIGV-SDLVVGSRHLQALDVSELRSLTDHTL-FKVAENCNRLQGLNITGCVKVTDDSLIAVSQNCRLLKRLKLNGVSQVTDKAILSFAQNCPS-ILEIDLQECKLVTNQSVTALMTTLQ--NLRELRLAHCTEIDDSAFLDLPRHIQMTSLRILDLTACENIRDEAVERIV-SSAPRLRNLVLAKCKFITDRAVWAICKLGKNLHYVHLGHCSNINDSA 389
BLAST of FC872882 vs. ExPASy Swiss-Prot
Match: FBL12_ARATH (F-box/LRR-repeat protein 12 OS=Arabidopsis thaliana GN=FBL12 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12 Identity = 67/256 (26.17%), Postives = 113/256 (44.14%), Query Frame = 1 Query: 28 LKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPCK-SLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFL---PVL-----ESCE------------AGLAKVNLSG--CVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAVADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMVSNKSLGALR 726 L+ L C L+D+ L S L +L L+ C I+ G C LS+VS ++G+ +++ SL+ +++ CP D + L + C QL++V +S + +T GF P L +SC+ G+ +N+SG C D +V + + L +LNL CR + D S+ A+A CPLL + +++ C NL+ L ++ C + ++ L ALR Sbjct: 93 LEHLSLSGCTVLNDSSLDSLRYPGARLHTLYLDCCFGISDDGISTIASFCPN----LSVVSLYRCNISDIGLETLARASLSLKCVNLSYCPLVSDFGIKALSQACLQLESVKISNCKSITGVGFSGCSPTLGYVDADSCQLEPKGITGIISGGGIEFLNISGVSCYIRKDGLVPIGSGIAS-KLRILNLRMCRTVGDESIEAIAKGCPLLQEWNLALCHEVKISGWEAVGKWCRNLKKLHVNRCRNLCDQGLLALR 343
BLAST of FC872882 vs. ExPASy Swiss-Prot
Match: FBXL4_BOVIN (F-box/LRR-repeat protein 4 OS=Bos taurus GN=FBXL4 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.594e-11 Identity = 65/217 (29.95%), Postives = 102/217 (47.00%), Query Frame = 1 Query: 7 VGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSV-SPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLES---CEAGLA-------KVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAVADNCPLLCDLDVSKCAVTD 624 + + CPNL+ L C L AK L+ L L ++ Q S+LN L+ LSL SC+ I+D ++ + + CK LR+L + C ++ +A L CP L+ +DL G+ P L+S C A LA K+ L+ ++ D + +A + L L++ G R +S ASL + ++C L LDVS C+ D Sbjct: 396 ISEMCPNLQDLNLSSCDKLPPQAFSHIAKLC-GLKRLVLYRT-KVEQTALL-SILNFCSDLQHLSLGSCVMIEDYDVTASMIGAKCKKLRTLDLWRCKNITESGIAELASGCPLLEELDL---------GWCPTLQSSTGCFARLARQLPNLQKLFLTANRSVCDTDIEELAS-NCTRLRQLDILGTRMVSPASLRKLLESCKDLSLLDVSFCSQID 599
BLAST of FC872882 vs. ExPASy Swiss-Prot
Match: FB37_ARATH (F-box protein At1g47056 OS=Arabidopsis thaliana GN=At1g47056 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.594e-11 Identity = 66/243 (27.16%), Postives = 108/243 (44.44%), Query Frame = 1 Query: 4 AVGKGCPNLKQFCLRKCAFLSDNG--LISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKD-----------------------QNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQG--VTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAVADNCPLLCDLDVSKCAVTDFGIASLAHG 651 AV C NL++ +++ +D +I AA SL+S+ L+E + FG ++ + LK+L L C G D ++ + ++S C SL SL + P + LA + + C +L+ + + G + + D G + V + C L ++ L G VN T + +A LE L L GC D L +A CP L L + C ++D GI +LA+G Sbjct: 175 AVLDHCSNLEELSIKRLRGFTDIAPEMIGPGVAASSLKSICLKELYNGQ---CFGPVIVGAKNLKSLKLFRCSGDWDLLLQEMSGKDHGVVEIHLERMQVSDVALSAISYCSSLESLHLVKTPECTNFGLAAIAEKCKRLRKLHIDGWKANLIGDEGLVAVAKFCSQ-LQELVLIG-VNPTTLSLGMLAA-KCLNLERLALCGCDTFGDPELSCIAAKCPALRKLCIKNCPISDVGIENLANG 411
BLAST of FC872882 vs. ExPASy Swiss-Prot
Match: AMN1_RAT (Protein AMN1 homolog OS=Rattus norvegicus GN=Amn1 PE=2 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 2.081e-11 Identity = 60/183 (32.79%), Postives = 91/183 (49.73%), Query Frame = 1 Query: 22 PNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEEC--HR--ITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLES-CEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDAS 555 P +++ LR C +SD L K L++L L+ C HR IT G +C + L +SL C + D+ + +++ C+ L+ + + C D SL LGK CP LQ VD S Q V+D G + ++ C L ++N+ C+NLTDK V A + +L GC I+D S Sbjct: 61 PEVQRLDLRSCN-ISDVALQHLCKCR-KLKALNLKSCREHRNSITSEGIKAVASSCSD-LHEISLKGCCSVTDEGVLALALN-CQLLKIIDLGGCLSITDESLHALGKNCPFLQCVDFSTTQ-VSDNGVVALVSGPCAKQLEEINMGYCINLTDKAVEA-ALTACPQICILLFHGCPLITDHS 237
BLAST of FC872882 vs. ExPASy Swiss-Prot
Match: AMN1_PONAB (Protein AMN1 homolog OS=Pongo abelii GN=AMN1 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.081e-11 Identity = 48/132 (36.36%), Postives = 74/132 (56.06%), Query Frame = 1 Query: 268 LRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQG----VTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAVADNCPLLCDLDVSKCAVTDFGIASLAHG 651 +++L +R+C DA+L L C +L+ ++L+ +G VT G V SC L + +L C NLTD+ V +A L+ L+++NL GC I+D SL A+ NCP L +D S V+D G+ +L G Sbjct: 63 VQTLDLRSCD-ISDAALLHLSN-CRKLKKLNLNASKGNRVSVTSEGIKVVASSCSY-LHEASLKRCCNLTDEGVVALA-LNCQLLKIINLGGCLSITDVSLHALGKNCPFLQCVDFSATQVSDSGVIALVSG 190
BLAST of FC872882 vs. ExPASy Swiss-Prot
Match: FBXL4_HUMAN (F-box/LRR-repeat protein 4 OS=Homo sapiens GN=FBXL4 PE=2 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 4.637e-11 Identity = 63/217 (29.03%), Postives = 101/217 (46.54%), Query Frame = 1 Query: 7 VGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSV-SPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEA----------GLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAVADNCPLLCDLDVSKCAVTD 624 + + CPNL+ L C L AK SL+ L L ++ Q S+LN +L+ LSL SC+ I+D ++ + + CK LR+L + C + +A L CP L+ +DL G+ P L+S L K+ L+ ++ D + +A + L+ L++ G R +S ASL + ++C L LDVS C+ D Sbjct: 396 ISEMCPNLQALNLSSCDKLPPQAFNHIAKLC-SLKRLVLYRT-KVEQTALL-SILNFCSELQHLSLGSCVMIEDYDVIASMIGAKCKKLRTLDLWRCKNITENGIAELASGCPLLEELDL---------GWCPTLQSSTGCFTRLAHQLPNLQKLFLTANRSVCDTDIDELA-CNCTRLQQLDILGTRMVSPASLRKLLESCKDLSLLDVSFCSQID 599
BLAST of FC872882 vs. ExPASy Swiss-Prot
Match: AMN1_HUMAN (Protein AMN1 homolog OS=Homo sapiens GN=AMN1 PE=2 SV=4) HSP 1 Score: 68.1662 bits (165), Expect = 6.056e-11 Identity = 47/132 (35.61%), Postives = 74/132 (56.06%), Query Frame = 1 Query: 268 LRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQG----VTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAVADNCPLLCDLDVSKCAVTDFGIASLAHG 651 +++L +R+C DA+L L C +L+ ++L+ +G VT G V SC L + +L C NLTD+ V +A L+ L++++L GC I+D SL A+ NCP L +D S V+D G+ +L G Sbjct: 63 VQTLDLRSCD-ISDAALLHLSN-CRKLKKLNLNASKGNRVSVTSEGIKAVASSCSY-LHEASLKRCCNLTDEGVVALA-LNCQLLKIIDLGGCLSITDVSLHALGKNCPFLQCVDFSATQVSDSGVIALVSG 190 The following BLAST results are available for this feature:
BLAST of FC872882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 28
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC872882 ID=FC872882; Name=FC872882; organism=Citrus clementina; type=EST; length=791bpback to top |