FC872882

Overview
NameFC872882
Unique NameFC872882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length791
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872882 vs. ExPASy Swiss-Prot
Match: GRRA_EMENI (SCF E3 ubiquitin ligase complex F-box protein grrA OS=Emericella nidulans GN=grrA PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.459e-12
Identity = 61/247 (24.70%), Postives = 123/247 (49.80%), Query Frame = 1
Query:   61 LSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDK-VVSTMAELHGWTLEMLNLDGCRKISDASLMAVADNCPL--LCDLDVSKCA-VTDFGIASLAHGNYLNLQILSLSGCSMVSNKSLGALRKLGQTLLGLNPPHCNAISTNS 789
            +SD  ++ F++    +E L L  C ++T +G    L+     L+AL +     + D  L  +    C  L+ L+I  C    D SL  + + C  L+ + L+G+  VTD   L   ++C + + +++L  C  +T++ V + M  L    L  L L  C +I D++ + +  +  +  L  LD++ C  + D  +  +   +   L+ L L+ C  ++++++ A+ KLG+ L  ++  HC+ I+ ++
Sbjct:  150 VSDGTVVPFSQCN-RIERLTLTNCRKLTDIGV-SDLVVGSRHLQALDVSELRSLTDHTL-FKVAENCNRLQGLNITGCVKVTDDSLIAVSQNCRLLKRLKLNGVSQVTDKAILSFAQNCPS-ILEIDLQECKLVTNQSVTALMTTLQ--NLRELRLAHCTEIDDSAFLDLPRHIQMTSLRILDLTACENIRDEAVERIV-SSAPRLRNLVLAKCKFITDRAVWAICKLGKNLHYVHLGHCSNINDSA 389          
BLAST of FC872882 vs. ExPASy Swiss-Prot
Match: FBL12_ARATH (F-box/LRR-repeat protein 12 OS=Arabidopsis thaliana GN=FBL12 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 67/256 (26.17%), Postives = 113/256 (44.14%), Query Frame = 1
Query:   28 LKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPCK-SLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFL---PVL-----ESCE------------AGLAKVNLSG--CVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAVADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMVSNKSLGALR 726
            L+   L  C  L+D+ L S       L +L L+ C  I+  G       C      LS+VS       ++G+ +++    SL+ +++  CP   D  +  L + C QL++V +S  + +T  GF    P L     +SC+             G+  +N+SG  C    D +V   + +    L +LNL  CR + D S+ A+A  CPLL + +++ C                NL+ L ++ C  + ++ L ALR
Sbjct:   93 LEHLSLSGCTVLNDSSLDSLRYPGARLHTLYLDCCFGISDDGISTIASFCPN----LSVVSLYRCNISDIGLETLARASLSLKCVNLSYCPLVSDFGIKALSQACLQLESVKISNCKSITGVGFSGCSPTLGYVDADSCQLEPKGITGIISGGGIEFLNISGVSCYIRKDGLVPIGSGIAS-KLRILNLRMCRTVGDESIEAIAKGCPLLQEWNLALCHEVKISGWEAVGKWCRNLKKLHVNRCRNLCDQGLLALR 343          
BLAST of FC872882 vs. ExPASy Swiss-Prot
Match: FBXL4_BOVIN (F-box/LRR-repeat protein 4 OS=Bos taurus GN=FBXL4 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.594e-11
Identity = 65/217 (29.95%), Postives = 102/217 (47.00%), Query Frame = 1
Query:    7 VGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSV-SPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLES---CEAGLA-------KVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAVADNCPLLCDLDVSKCAVTD 624
            + + CPNL+   L  C  L        AK    L+ L L    ++ Q     S+LN    L+ LSL SC+ I+D ++    + + CK LR+L +  C    ++ +A L   CP L+ +DL         G+ P L+S   C A LA       K+ L+   ++ D  +  +A  +   L  L++ G R +S ASL  + ++C  L  LDVS C+  D
Sbjct:  396 ISEMCPNLQDLNLSSCDKLPPQAFSHIAKLC-GLKRLVLYRT-KVEQTALL-SILNFCSDLQHLSLGSCVMIEDYDVTASMIGAKCKKLRTLDLWRCKNITESGIAELASGCPLLEELDL---------GWCPTLQSSTGCFARLARQLPNLQKLFLTANRSVCDTDIEELAS-NCTRLRQLDILGTRMVSPASLRKLLESCKDLSLLDVSFCSQID 599          
BLAST of FC872882 vs. ExPASy Swiss-Prot
Match: FB37_ARATH (F-box protein At1g47056 OS=Arabidopsis thaliana GN=At1g47056 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.594e-11
Identity = 66/243 (27.16%), Postives = 108/243 (44.44%), Query Frame = 1
Query:    4 AVGKGCPNLKQFCLRKCAFLSDNG--LISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKD-----------------------QNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQG--VTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAVADNCPLLCDLDVSKCAVTDFGIASLAHG 651
            AV   C NL++  +++    +D    +I    AA SL+S+ L+E +       FG ++   + LK+L L  C G  D                        ++ + ++S C SL SL +   P   +  LA + + C +L+ + + G +   + D G + V + C   L ++ L G VN T   +  +A      LE L L GC    D  L  +A  CP L  L +  C ++D GI +LA+G
Sbjct:  175 AVLDHCSNLEELSIKRLRGFTDIAPEMIGPGVAASSLKSICLKELYNGQ---CFGPVIVGAKNLKSLKLFRCSGDWDLLLQEMSGKDHGVVEIHLERMQVSDVALSAISYCSSLESLHLVKTPECTNFGLAAIAEKCKRLRKLHIDGWKANLIGDEGLVAVAKFCSQ-LQELVLIG-VNPTTLSLGMLAA-KCLNLERLALCGCDTFGDPELSCIAAKCPALRKLCIKNCPISDVGIENLANG 411          
BLAST of FC872882 vs. ExPASy Swiss-Prot
Match: AMN1_RAT (Protein AMN1 homolog OS=Rattus norvegicus GN=Amn1 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.081e-11
Identity = 60/183 (32.79%), Postives = 91/183 (49.73%), Query Frame = 1
Query:   22 PNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEEC--HR--ITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLES-CEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDAS 555
            P +++  LR C  +SD  L    K    L++L L+ C  HR  IT  G      +C + L  +SL  C  + D+ +   +++ C+ L+ + +  C    D SL  LGK CP LQ VD S  Q V+D G + ++   C   L ++N+  C+NLTDK V   A      + +L   GC  I+D S
Sbjct:   61 PEVQRLDLRSCN-ISDVALQHLCKCR-KLKALNLKSCREHRNSITSEGIKAVASSCSD-LHEISLKGCCSVTDEGVLALALN-CQLLKIIDLGGCLSITDESLHALGKNCPFLQCVDFSTTQ-VSDNGVVALVSGPCAKQLEEINMGYCINLTDKAVEA-ALTACPQICILLFHGCPLITDHS 237          
BLAST of FC872882 vs. ExPASy Swiss-Prot
Match: AMN1_PONAB (Protein AMN1 homolog OS=Pongo abelii GN=AMN1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.081e-11
Identity = 48/132 (36.36%), Postives = 74/132 (56.06%), Query Frame = 1
Query:  268 LRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQG----VTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAVADNCPLLCDLDVSKCAVTDFGIASLAHG 651
            +++L +R+C    DA+L  L   C +L+ ++L+  +G    VT  G   V  SC   L + +L  C NLTD+ V  +A L+   L+++NL GC  I+D SL A+  NCP L  +D S   V+D G+ +L  G
Sbjct:   63 VQTLDLRSCD-ISDAALLHLSN-CRKLKKLNLNASKGNRVSVTSEGIKVVASSCSY-LHEASLKRCCNLTDEGVVALA-LNCQLLKIINLGGCLSITDVSLHALGKNCPFLQCVDFSATQVSDSGVIALVSG 190          
BLAST of FC872882 vs. ExPASy Swiss-Prot
Match: FBXL4_HUMAN (F-box/LRR-repeat protein 4 OS=Homo sapiens GN=FBXL4 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.637e-11
Identity = 63/217 (29.03%), Postives = 101/217 (46.54%), Query Frame = 1
Query:    7 VGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSV-SPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEA----------GLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAVADNCPLLCDLDVSKCAVTD 624
            + + CPNL+   L  C  L        AK   SL+ L L    ++ Q     S+LN   +L+ LSL SC+ I+D ++    + + CK LR+L +  C    +  +A L   CP L+ +DL         G+ P L+S              L K+ L+   ++ D  +  +A  +   L+ L++ G R +S ASL  + ++C  L  LDVS C+  D
Sbjct:  396 ISEMCPNLQALNLSSCDKLPPQAFNHIAKLC-SLKRLVLYRT-KVEQTALL-SILNFCSELQHLSLGSCVMIEDYDVIASMIGAKCKKLRTLDLWRCKNITENGIAELASGCPLLEELDL---------GWCPTLQSSTGCFTRLAHQLPNLQKLFLTANRSVCDTDIDELA-CNCTRLQQLDILGTRMVSPASLRKLLESCKDLSLLDVSFCSQID 599          
BLAST of FC872882 vs. ExPASy Swiss-Prot
Match: AMN1_HUMAN (Protein AMN1 homolog OS=Homo sapiens GN=AMN1 PE=2 SV=4)

HSP 1 Score: 68.1662 bits (165), Expect = 6.056e-11
Identity = 47/132 (35.61%), Postives = 74/132 (56.06%), Query Frame = 1
Query:  268 LRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLSGLQG----VTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAVADNCPLLCDLDVSKCAVTDFGIASLAHG 651
            +++L +R+C    DA+L  L   C +L+ ++L+  +G    VT  G   V  SC   L + +L  C NLTD+ V  +A L+   L++++L GC  I+D SL A+  NCP L  +D S   V+D G+ +L  G
Sbjct:   63 VQTLDLRSCD-ISDAALLHLSN-CRKLKKLNLNASKGNRVSVTSEGIKAVASSCSY-LHEASLKRCCNLTDEGVVALA-LNCQLLKIIDLGGCLSITDVSLHALGKNCPFLQCVDFSATQVSDSGVIALVSG 190          
The following BLAST results are available for this feature:
BLAST of FC872882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
GRRA_EMENI2.459e-1224.70SCF E3 ubiquitin ligase complex F-box protein grrA... [more]
FBL12_ARATH9.343e-1226.17F-box/LRR-repeat protein 12 OS=Arabidopsis thalian... [more]
FBXL4_BOVIN1.594e-1129.95F-box/LRR-repeat protein 4 OS=Bos taurus GN=FBXL4 ... [more]
FB37_ARATH1.594e-1127.16F-box protein At1g47056 OS=Arabidopsis thaliana GN... [more]
AMN1_RAT2.081e-1132.79Protein AMN1 homolog OS=Rattus norvegicus GN=Amn1 ... [more]
AMN1_PONAB2.081e-1136.36Protein AMN1 homolog OS=Pongo abelii GN=AMN1 PE=2 ... [more]
FBXL4_HUMAN4.637e-1129.03F-box/LRR-repeat protein 4 OS=Homo sapiens GN=FBXL... [more]
AMN1_HUMAN6.056e-1135.61Protein AMN1 homolog OS=Homo sapiens GN=AMN1 PE=2 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB3DB01ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3DB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872882 ID=FC872882; Name=FC872882; organism=Citrus clementina; type=EST; length=791bp
GGGGCTGTGGGCAAGGGGTGCCCAAATTTGAAGCAGTTCTGCCTCCGAAA
ATGTGCCTTTTTATCTGACAATGGACTGATCTCTTTTGCTAAAGCTGCTT
TCTCACTTGAAAGCCTTCAGTTGGAAGAGTGCCACAGGATCACCCAACTT
GGGTTTTTTGGTTCCCTTTTAAACTGTGGTGAAAAGTTGAAGGCTTTATC
ATTGGTGAGCTGCTTGGGGATTAAGGATCAAAATCTGGGTGTCCGTTCAG
TGTCTCCCTGCAAATCCTTGCGATCATTGTCCATCCGTAACTGTCCTGGA
TTTGGTGACGCAAGCCTGGCTGTGTTGGGGAAATTGTGCCCTCAGTTGCA
GAATGTTGATTTGAGTGGGCTTCAGGGTGTAACAGATGCTGGGTTTTTAC
CAGTGCTTGAGAGTTGTGAGGCTGGTCTTGCAAAGGTTAATCTTAGTGGT
TGTGTGAATTTGACTGACAAAGTTGTTTCAACGATGGCTGAATTGCATGG
TTGGACTCTAGAAATGTTGAATCTCGATGGTTGTAGGAAGATCAGTGATG
CAAGCTTGATGGCAGTTGCAGACAACTGCCCTTTGCTGTGTGATCTCGAT
GTCTCTAAGTGTGCTGTCACTGATTTTGGTATTGCATCCCTAGCTCATGG
AAACTATCTCAATCTGCAAATTCTTTCGCTGTCAGGTTGCTCAATGGTTT
CAAACAAGAGTTTGGGTGCCCTAAGAAAGTTGGGTCAGACCCTTCTGGGT
TTGAACCCCCCGCACTGCAATGCAATCAGCACCAACTCTGT
back to top