FC872942

Overview
NameFC872942
Unique NameFC872942
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length938
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872942 vs. ExPASy Swiss-Prot
Match: PERN_IPOBA (Neutral peroxidase OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.212e-35
Identity = 98/261 (37.55%), Postives = 131/261 (50.19%), Query Frame = 3
Query:    6 FVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVEKACRRV-VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 785
            FVDGCD  ILL+ T     E+ A  N+NS RGF VID  K   +  C    VSCAD+L IAA  +       ++ + LGR+D+RTAN   AN  LP P ++L    + F + G N + ++V L+GAHT G ++C                   +++     L+  CP   N   L   D  +P  FD KYF  L   +GLL SDQEL  +    TA  V  +     AF  +F  +M++M NL P  G Q EIR  C RVN
Sbjct:  103 FVDGCDGGILLNDTANFTGEQGAPANSNSVRGFSVIDQAKRNAQTKCADTPVSCADVLAIAARDAFRKFTNQTYNITLGRQDARTANLTGANTQLPAPFDNLSIQTAKFADKGFNQR-EMVVLAGAHTVGFSRCAVLC-----------TSTNLNQNRSATLQCTCPASANDTGLVGLD-PSPGTFDKKYFEELVKGQGLLFSDQELMQSNATVTA--VRRYRDATGAFLTDFAAAMVKMSNLPPSAGVQLEIRNVCSRVN 348          
BLAST of FC872942 vs. ExPASy Swiss-Prot
Match: PERA_IPOBA (Anionic peroxidase OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.212e-35
Identity = 103/264 (39.02%), Postives = 136/264 (51.52%), Query Frame = 3
Query:    6 FVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVEKACRRV-VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGNN 794
            FVDGCDA +LL+ T T   E+ AA NNNS RGF VI+  K  V+     + VSCADIL+IAA  S     G ++ V LGR+D+RTAN   AN  L GP+ +L    + F   G N   ++VAL G+HT G A+C       +           ++   +  L   C    N   L   D  TP  +D +YFS++   +GLL SD EL    G  T A V  +     AF  +F  +M++M NL P  G   EIR  C RVN N+
Sbjct:  102 FVDGCDAGLLLNDTATFTGEQTAAGNNNSVRGFAVIEQAKQNVKTQMPDMSVSCADILSIAARDSFEKFSGSTYTVTLGRKDARTANFTGANTQLVGPNENLTSQLTKFAAKGFNGT-EMVALLGSHTIGFARCPLLCISTF-----------INPARVSTLNCNCSGTVNATGLVGLD-PTPTTWDQRYFSDVVNDQGLLFSDNELLK--GNTTNAAVRRYRDAMGAFLTDFAAAMVKMSNLPPSPGVALEIRDVCSRVNANS 350          
BLAST of FC872942 vs. ExPASy Swiss-Prot
Match: PER6_ARATH (Peroxidase 6 OS=Arabidopsis thaliana GN=PER6 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.583e-35
Identity = 98/262 (37.40%), Postives = 144/262 (54.96%), Query Frame = 3
Query:    9 VDGCDASILLDSTNTIDSEKFAAPNNN-SARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPT-VDRTLLKQLRELCPQGGNGAVLANF-DVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 785
            VDGCDASIL+ ST    SE+ A  N +     F+VI  +K AVE  C  +VSC+DIL  A    +++ GGP   V  GR+DS  ++       L  P+ ++D + S F + GL  + ++VAL GAHT G + CK F+ R+  FNK+ +  P  ++     +LR+LC    N   ++ F DV TP  FDN Y+ NL+   GLLQSD  +       T ++V+ +  ++TAFF  F  +M ++      TG  GE+R  C + N
Sbjct:   66 VDGCDASILVASTPRKTSERDADINRSLPGDAFDVITRIKTAVELKCPNIVSCSDILVGATRSLISMVGGPRVNVKFGRKDSLVSDMNRVEGKLARPNMTMDHIISIFESSGLTVQ-EMVALVGAHTIGFSHCKEFASRI--FNKSDQNGPVEMNPKYAAELRKLCANYTNDEQMSAFNDVFTPGKFDNMYYKNLKHGYGLLQSDHAI--AFDNRTRSLVDLYAEDETAFFDAFAKAMEKVSEKNVKTGKLGEVRRRCDQYN 322          
BLAST of FC872942 vs. ExPASy Swiss-Prot
Match: PER18_ARATH (Peroxidase 18 OS=Arabidopsis thaliana GN=PER18 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.135e-33
Identity = 94/264 (35.61%), Postives = 134/264 (50.76%), Query Frame = 3
Query:    6 FVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGK---PDPTVDRTLLKQLRELCPQG-GNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 785
            FV GCD S+L+    T  S+    P N S  GF VI+++K  +E  C   VSCADIL +AA  +V   GGP   +P GRRD R +  A    N+     ++D++ + F + GL+   DLV LSGAHT G A C  F+ R +  +  G     D ++D +  + L   C         + + D +T   FDN+Y+ NL   KGL Q+D  L       T  IVE    +Q +FF  +  S ++M  +    G +GEIR +C  VN
Sbjct:   74 FVQGCDGSVLIRGNGTERSD----PGNASLGGFAVIESVKNILEIFCPGTVSCADILVLAARDAVEALGGPVVPIPTGRRDGRVSMAANVRPNIIDTDFTVDKMINIFSSKGLS-VHDLVVLSGAHTIGAAHCNTFNSR-FKLDPKGNLELIDASLDNSYAQTLVNKCSSSLDPTTTVVDNDPETSSTFDNQYYKNLLAHKGLFQTDSALMEDD--RTRKIVEILANDQESFFDRWTESFLKMSLMGVRVGEEGEIRRSCSAVN 329          
BLAST of FC872942 vs. ExPASy Swiss-Prot
Match: PER21_ARATH (Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.794e-32
Identity = 91/263 (34.60%), Postives = 135/263 (51.33%), Query Frame = 3
Query:    9 VDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPS-WAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQ---GGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 785
            V  CDAS+LL++   ++SE+  +  +   R F+ +  +K A+EK C   VSCADI+ ++A   + +  GP    +  GRRDSR +        +P  ++SL  + S+F ++G+ D    VAL GAH+ GR  C     RLY        DPT+D +    L++ CP      N  + +  D +TP   DN Y+ N+   KGLL  D EL + P   TA  V     +   F + F   +  +    PLTG+QGEIR +CR VN
Sbjct:   74 VKSCDASLLLETARGVESEQ-KSKRSFGMRNFKYVKIIKDALEKECPSTVSCADIVALSARDGIVMLKGPKIEMIKTGRRDSRGSYLGDVETLIPNHNDSLSSVISTFNSIGI-DVEATVALLGAHSVGRVHCVNLVHRLYP-----TIDPTLDPSYALYLKKRCPSPTPDPNAVLYSRNDRETPMVVDNMYYKNIMAHKGLLVIDDELATDP--RTAPFVAKMAADNNYFHEQFSRGVRLLSETNPLTGDQGEIRKDCRYVN 327          
BLAST of FC872942 vs. ExPASy Swiss-Prot
Match: PER42_ARATH (Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 6.883e-31
Identity = 88/265 (33.21%), Postives = 129/265 (48.68%), Query Frame = 3
Query:    9 VDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQG---GNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGNN 794
            V+ CDAS+LLDST     EK     +   R F  I+ +K A+E+ C  VVSC+DIL ++A   +   GGP   +  GRRD   +   +    LP  + S+  +   F+++G+ D   LVAL G+H+ GR  C     RLY      + DP+++   +  +   CP              D  TP   DN Y+ N+   KGLL  D +L       T  IV+   ++Q  FFK F  ++  +    PLTG++GEIR  C   N N+
Sbjct:   75 VESCDASLLLDSTRRELGEK-EHDRSFGLRNFRYIEEIKEALERECPGVVSCSDILVLSAREGIEAVGGPYIPLKTGRRDGLKSRTDMLESYLPDHNESISVVLEKFKSIGI-DTPGLVALLGSHSVGRTHCVKLVHRLYP-----EVDPSLNPDHVPHMLHKCPDSIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLLLVDHQL--AHDKRTRPIVKKMAKDQAYFFKEFTRAIQILSENNPLTGSKGEIRKQCNLANKNH 330          
BLAST of FC872942 vs. ExPASy Swiss-Prot
Match: PER29_ARATH (Peroxidase 29 OS=Arabidopsis thaliana GN=PER29 PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 9.939e-30
Identity = 88/264 (33.33%), Postives = 139/264 (52.65%), Query Frame = 3
Query:    9 VDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVPLGRRDS-RTANRALANQNLPGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGG--NGAVLANF--DVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 785
            V GCDASILL+        +  +  N   R  +++ ++K ++E  C + VSC+D++ +AA  +VAL+GGP  +VPLGR+DS  T ++ +A+  LP  +  +D   S F N G+  + + VA+ GAHT G   C     R  + N T +    +D      LR  CP+    + A  A F  + +T   FD  Y+ +    +G L+ D E+ + P   T   VE F  +Q  FF  F  + +++ + K LTGN+G IR  C +V+
Sbjct:   82 VQGCDASILLEPIRDQQFTELDSAKNFGIRKRDLVGSIKTSLELECPKQVSCSDVIILAARDAVALTGGPLISVPLGRKDSLSTPSKHVADSELPPSTADVDTTLSLFANKGMTIE-ESVAIMGAHTIGVTHCNNVLSRFDNANATSE---NMDPRFQTFLRVACPEFSPTSQAAEATFVPNDQTSVIFDTAYYDDAIAGRGNLRIDSEIGADP--RTRPFVEAFAADQDRFFNAFSSAFVKLSSYKVLTGNEGVIRSVCDKVD 339          
BLAST of FC872942 vs. ExPASy Swiss-Prot
Match: PERX_LUPPO (Peroxidase (Fragment) OS=Lupinus polyphyllus PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 1.137e-25
Identity = 65/167 (38.92%), Postives = 89/167 (53.29%), Query Frame = 3
Query:  288 PGPSNSLDELKSSFRNVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCPQGGNGAV-LANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVN 785
            PGPS+ L  L + F   GL    DL  LSG HT G+++C+FF  R+Y+       D  +D       +  CP    G   LA  D  TP+ FDN Y+ +L   +GLL SDQ LF+    DT  +V  +  N   FF +F  ++++M  + PLTG  GEIR NCR +N
Sbjct:    2 PGPSSDLTTLTTKFAAKGLTPS-DLTVLSGGHTIGQSECQFFKTRIYN-------DTNIDTNFATSRQANCPFSAGGETNLAPLDSLTPNRFDNNYYKDLVSNRGLLHSDQVLFNGGSQDT--LVRTYSTNNVKFFSDFAAAIVKMSKISPLTGIAGEIRKNCRVIN 158          
BLAST of FC872942 vs. ExPASy Swiss-Prot
Match: PER2_HORVU (Peroxidase 2 (Fragment) OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.321e-25
Identity = 73/173 (42.20%), Postives = 92/173 (53.18%), Query Frame = 3
Query:  315 LKSSFRNVGLNDKFDLVALSGAHTFGRAQCKFFSDRLYDFNKTGKPDPTVDRTLLKQLRELCP-QGGNGAVLANFDVKTPDAFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQTAFFKNFVISMIRMGNLKPLTGNQGEIRLNCRRVNGNNNIATRSSSSEGD 830
            L SSF N  L D  DLV+LSGAHTFG A C  F DR    +   + +P +D      LR  C     +G +    DV+TPD FDNKY+ +L  R+GL +SDQ L   P   T  +   F  NQ AFF+ F  SM +M N+  LTG +GEIR NC   N     +   S + GD
Sbjct:    3 LISSFANRSL-DVADLVSLSGAHTFGVAHCPAFEDR----SSRVRHNPAIDGKFATALRNKCSGDNPSGTLTQKLDVRTPDVFDNKYYFDLIARQGLFKSDQGLIDHP--TTKRMATRFSLNQGAFFEQFARSMTKMSNMDILTGTKGEIRNNCAVPNRRVRTSRPPSPARGD 168          
BLAST of FC872942 vs. ExPASy Swiss-Prot
Match: PERX_WHEAT (Peroxidase (Fragment) OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.031e-18
Identity = 46/78 (58.97%), Postives = 57/78 (73.08%), Query Frame = 3
Query:   96 RGFEVIDNMKAAVEKACRRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPSNSLDELKSSF 329
            RGF VID++K  +E  C + VSCADILT+AA  SV   GGPSW VPLGRRDS  AN A AN +LPG ++S  EL+++F
Sbjct:    3 RGFGVIDSIKTQIEAICNQTVSCADILTVAARDSVVALGGPSWTVPLGRRDSIDANEAEANSDLPGFNSSRSELEAAF 80          
The following BLAST results are available for this feature:
BLAST of FC872942 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
PERN_IPOBA1.212e-3537.55Neutral peroxidase OS=Ipomoea batatas PE=1 SV=1[more]
PERA_IPOBA1.212e-3539.02Anionic peroxidase OS=Ipomoea batatas PE=1 SV=1[more]
PER6_ARATH1.583e-3537.40Peroxidase 6 OS=Arabidopsis thaliana GN=PER6 PE=2 ... [more]
PER18_ARATH1.135e-3335.61Peroxidase 18 OS=Arabidopsis thaliana GN=PER18 PE=... [more]
PER21_ARATH2.794e-3234.60Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=... [more]
PER42_ARATH6.883e-3133.21Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=... [more]
PER29_ARATH9.939e-3033.33Peroxidase 29 OS=Arabidopsis thaliana GN=PER29 PE=... [more]
PERX_LUPPO1.137e-2538.92Peroxidase (Fragment) OS=Lupinus polyphyllus PE=2 ... [more]
PER2_HORVU4.321e-2542.20Peroxidase 2 (Fragment) OS=Hordeum vulgare PE=2 SV... [more]
PERX_WHEAT1.031e-1858.97Peroxidase (Fragment) OS=Triticum aestivum PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2AG10ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2AG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872942 ID=FC872942; Name=FC872942; organism=Citrus clementina; type=EST; length=938bp
GGGGTTTTGTTGATGGGTGTGATGCTTCGATTTTGCTGGACAGCACTAAC
ACCATAGACAGCGAGAAATTTGCTGCGCCAAATAATAATTCGGCGAGGGG
TTTTGAAGTTATTGATAACATGAAAGCTGCCGTTGAAAAGGCATGTCGAA
GGGTTGTTTCCTGCGCTGATATTCTTACTATTGCGGCTGAACGATCCGTT
GCTTTGTCAGGGGGTCCGTCATGGGCAGTTCCATTGGGAAGAAGAGACAG
CAGAACGGCAAACAGAGCTCTTGCAAATCAGAATCTTCCAGGACCATCTA
ATTCTCTTGATGAGCTCAAATCTAGTTTTAGAAATGTTGGCCTCAATGAC
AAGTTTGATCTTGTTGCACTCTCCGGAGCTCACACGTTTGGAAGGGCTCA
GTGCAAATTTTTCAGTGACAGATTATACGATTTCAACAAAACTGGCAAGC
CAGACCCAACAGTGGACAGAACCCTCTTAAAGCAACTGAGGGAACTATGC
CCACAGGGTGGAAACGGCGCCGTTCTTGCTAATTTTGATGTCAAAACACC
TGATGCTTTCGACAACAAATACTTCTCCAATCTTAGACTCCGCAAAGGCC
TTCTGCAGAGTGATCAAGAGTTGTTTTCGACTCCTGGTGCCGATACCGCT
GCCATTGTCGAGGACTTTGGGAGGAACCAGACTGCTTTCTTTAAAAACTT
TGTGATCTCAATGATAAGAATGGGCAATTTGAAACCACTGACAGGAAATC
AAGGGGAGATTAGATTGAACTGCAGGAGGGTCAATGGAAACAATAATATT
GCAACAAGATCATCATCATCGGAGGGTGATTTGGTCAGCTCTTTCTAATA
AGCTAGCTTGCGGCATATGCGAGAGAGTTTTTGTGCTTAACAAACTCGAT
TTAATCTTATCGTTTGGCCTGAAACATGTTATGTGTTT
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