FC872951

Overview
NameFC872951
Unique NameFC872951
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872951 vs. ExPASy Swiss-Prot
Match: PAP_CITUN (Plastid-lipid-associated protein, chloroplastic OS=Citrus unshiu GN=PAP PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.141e-33
Identity = 71/159 (44.65%), Postives = 98/159 (61.64%), Query Frame = 3
Query:    3 PLLAAGAIPLLKVEKICQKIDTSSLTIENXXXXXXXXXXXXXXXXXXXEVRSPSRIQVQFKEGTLQPPDIKSTVDLPGNLNIFGQNINLSPVQQTLSPLQEAVGSISRAVSGQPPLKVPIPGERTQSWLLITYLDEDFRISRGD-GGLFVLVKEGSPLL 476
            PLL+ G +PL +VE+I Q ID+ + T++N                   EVRSP R+Q++F+EG +  P +  ++ LP N+   GQ I+LSP +  LS +Q+   S+++ +S QPPLK  I     QSWLL TYLDED RISR D G +FV +KEGSPLL
Sbjct:  163 PLLSRGTLPLARVEEISQTIDSENFTVQNSIQFAGPLATTSISTNAKFEVRSPKRVQIKFEEGVIGTPQVTDSLVLPENVEFLGQKIDLSPFKGILSSVQDTASSVAKTISSQPPLKFSISNSNAQSWLLTTYLDEDLRISRADAGSVFVFIKEGSPLL 321          
BLAST of FC872951 vs. ExPASy Swiss-Prot
Match: LIPC_SOLDE (Light-induced protein, chloroplastic OS=Solanum demissum PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.541e-33
Identity = 68/159 (42.77%), Postives = 101/159 (63.52%), Query Frame = 3
Query:    3 PLLAAGAIPLLKVEKICQKIDTSSLTIENXXXXXXXXXXXXXXXXXXXEVRSPSRIQVQFKEGTLQPPDIKSTVDLPGNLNIFGQNINLSPVQQTLSPLQEAVGSISRAVSGQPPLKVPIPGERTQSWLLITYLDEDFRISRGD-GGLFVLVKEGSPLL 476
            PLL+ G +PL++VE+I Q ID+ S T++N                   EVRSP R+Q++F+EG +  P +  ++ LP N+   GQ I++SP +  ++ +Q+   S+ +++S QPP+K PI     QSWLL TYLD++ RI RGD G +FVL+KEGSPLL
Sbjct:  166 PLLSRGNLPLVRVEEISQTIDSESFTVQNSVVFAGPLATTSISTNAKFEVRSPKRVQIKFEEGIIGTPQLTDSIVLPENVEFLGQKIDVSPFKGLITSVQDTASSVVKSISSQPPIKFPITNNNAQSWLLTTYLDDELRIPRGDAGSVFVLIKEGSPLL 324          
BLAST of FC872951 vs. ExPASy Swiss-Prot
Match: CHRC_CUCSA (Chromoplast-specific carotenoid-associated protein, chromoplast OS=Cucumis sativus GN=CHRC PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.919e-31
Identity = 67/159 (42.14%), Postives = 99/159 (62.26%), Query Frame = 3
Query:    3 PLLAAGAIPLLKVEKICQKIDTSSLTIENXXXXXXXXXXXXXXXXXXXEVRSPSRIQVQFKEGTLQPPDIKSTVDLPGNLNIFGQNINLSPVQQTLSPLQEAVGSISRAVSGQPPLKVPIPGERTQSWLLITYLDEDFRISRGDGG-LFVLVKEGSPLL 476
            PLL+   +PL+KVE+I Q ID+ +LT++N                   EVRSP R+ ++F+EG +  P +  ++ +P N++  GQ I+ +P    +S LQ+   ++++ +S QPP+K  I   R +SWLL TYLDED RISRGDGG +FVL+KEGS  L
Sbjct:  163 PLLSRN-LPLVKVEEISQTIDSENLTVQNSVQFSGPLATTSITTNAKFEVRSPLRVHIKFEEGVIGTPQLTDSIVIPDNVDFLGQKIDFTPFNGIISSLQDTASNVAKTISSQPPIKFSISNTRVESWLLTTYLDEDLRISRGDGGSVFVLLKEGSSFL 320          
The following BLAST results are available for this feature:
BLAST of FC872951 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PAP_CITUN1.141e-3344.65Plastid-lipid-associated protein, chloroplastic OS... [more]
LIPC_SOLDE2.541e-3342.77Light-induced protein, chloroplastic OS=Solanum de... [more]
CHRC_CUCSA6.919e-3142.14Chromoplast-specific carotenoid-associated protein... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DG02FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DG02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872951 ID=FC872951; Name=FC872951; organism=Citrus clementina; type=EST; length=682bp
TGCCGCTGTTGGCTGCTGGTGCAATACCTCTTTTGAAAGTGGAAAAGATA
TGCCAAAAGATTGACACCAGTAGCCTCACTATTGAGAACTCGACTACATT
GTCCAGTCCCTTTGCTTCTTTCTCTTTCAGTGCAACTGCCTCCTTTGAAG
TTCGAAGCCCTTCTAGAATACAGGTTCAATTTAAGGAAGGTACCCTGCAA
CCTCCAGATATAAAGTCAACTGTTGATCTCCCAGGAAATTTAAATATTTT
TGGGCAGAATATCAATCTGTCACCAGTGCAACAAACTCTCTCCCCACTAC
AGGAGGCAGTGGGAAGTATTTCAAGAGCCGTTTCTGGTCAGCCGCCACTT
AAGGTGCCAATTCCAGGTGAACGGACCCAGTCTTGGCTTCTTATTACATA
CCTTGATGAGGATTTTCGTATCTCAAGGGGGGACGGCGGTCTTTTTGTGC
TTGTTAAAGAAGGGAGTCCTCTTCTAGATCAGTAGCCAGCAGACTCATTG
AAGAAGGAACAATTTGAAAATTGAAACCATTTTGATGGGATACAGTTGTA
AGAATCTCATTTTTCTTTCTTCATTCAAGTGGAGCAGAATGTGAAAAAAT
TGGAATGGAATTTTACAAAGGTTAATCATTTCTGTTGATTTTTTCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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