FC872958

Overview
NameFC872958
Unique NameFC872958
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1062 contig Ccv1_Contig1062:60..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: BSAA_BACSU (Glutathione peroxidase homolog bsaA OS=Bacillus subtilis GN=bsaA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 6.488e-27
Identity = 57/115 (49.57%), Postives = 72/115 (62.61%), Query Frame = 2
Query:  284 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLLKSKCWG 628
            S+Y   V+ I GKD+ L  F GKVL+IVN AS+CG T S   +L  LY+ Y+ +G EIL FPCNQF  QEPG   +I+EF  T +   FP+F KVDVNG N  P++  L     G
Sbjct:    2 SIYHMKVRTITGKDMTLQPFAGKVLMIVNTASKCGFT-SQLKQLQELYDTYQQEGLEILGFPCNQFMNQEPGEEADIQEFCETNYGVTFPMFSKVDVNGKNAHPLFVYLTEHAKG 115          

HSP 2 Score: 23.8682 bits (50), Expect = 6.488e-27
Identity = 11/23 (47.83%), Postives = 15/23 (65.22%), Query Frame = 3
Query:  606 Y*SPSAGGILGD-LVKWNFEKFL 671
            Y +  A G+LG   +KWNF KF+
Sbjct:  108 YLTEHAKGMLGTKAIKWNFTKFI 130          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX42_RAT (Phospholipid hydroperoxide glutathione peroxidase, nuclear OS=Rattus norvegicus GN=Gpx4 PE=2 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 8.346e-27
Identity = 53/111 (47.75%), Postives = 75/111 (67.57%), Query Frame = 2
Query:  281 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLLK 613
            +S+++F  KDIDG  V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G  ILAFPCNQFG QEPGSN EIKEFA   +   F ++ K+ VNG +  P+++ +K
Sbjct:   95 RSMHEFAAKDIDGHMVCLDKYRGCVCIVTNVASQUGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSNQEIKEFA-AGYNVRFDMYSKICVNGDDAHPLWKWMK 204          

HSP 2 Score: 30.4166 bits (67), Expect = 8.346e-27
Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = 3
Query:  615 PSAGGILGDLVKWNFEKFL 671
            P   G+LG+ +KWNF KFL
Sbjct:  207 PKGRGMLGNAIKWNFTKFL 225          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX41_RAT (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Rattus norvegicus GN=Gpx4 PE=1 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 8.396e-27
Identity = 53/111 (47.75%), Postives = 75/111 (67.57%), Query Frame = 2
Query:  281 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLLK 613
            +S+++F  KDIDG  V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G  ILAFPCNQFG QEPGSN EIKEFA   +   F ++ K+ VNG +  P+++ +K
Sbjct:   39 RSMHEFAAKDIDGHMVCLDKYRGCVCIVTNVASQUGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSNQEIKEFA-AGYNVRFDMYSKICVNGDDAHPLWKWMK 148          

HSP 2 Score: 30.4166 bits (67), Expect = 8.396e-27
Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = 3
Query:  615 PSAGGILGDLVKWNFEKFL 671
            P   G+LG+ +KWNF KFL
Sbjct:  151 PKGRGMLGNAIKWNFTKFL 169          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: BSAA_STAES (Glutathione peroxidase homolog bsaA OS=Staphylococcus epidermidis (strain ATCC 12228) GN=bsaA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.427e-26
Identity = 55/116 (47.41%), Postives = 72/116 (62.07%), Query Frame = 2
Query:  281 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLLKSKCWG 628
            +S+YDF V+  +G+   L ++KG V+LIVN AS CG TP  +  L  LY++YK Q F IL FPCNQFGGQEPGS  E  +     +   FPI +KVDV G N  P++  L +   G
Sbjct:    2 ESIYDFVVQKNNGESYKLEQYKGDVMLIVNTASECGFTPQ-FEGLQKLYDEYKDQRFIILGFPCNQFGGQEPGSGEEAAQNCKINYGVTFPIHEKVDVKGDNQHPLFHFLTNAAKG 116          

HSP 2 Score: 26.5646 bits (57), Expect = 2.427e-26
Identity = 9/18 (50.00%), Postives = 14/18 (77.78%), Query Frame = 3
Query:  618 SAGGILGDLVKWNFEKFL 671
            +A G++ + +KWNF KFL
Sbjct:  113 AAKGMINEKIKWNFTKFL 130          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX4_HYLLA (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Hylobates lar GN=GPX4 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 4.085e-26
Identity = 51/110 (46.36%), Postives = 74/110 (67.27%), Query Frame = 2
Query:  284 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLLK 613
            S+++F+ K +DG  V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G   LAFPCNQFG QEPGSN EIKEFA   +  +F +F K+ VNG +  P+++ +K
Sbjct:   40 SMHEFSAKVLDGHTVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRFLAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMK 148          

HSP 2 Score: 31.5722 bits (70), Expect = 4.085e-26
Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 3
Query:  615 PSAGGILGDLVKWNFEKFL 671
            P   GILG+ +KWNF KFL
Sbjct:  151 PKGKGILGNAIKWNFTKFL 169          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: BTUE_ECOLI (Vitamin B12 transport periplasmic protein btuE OS=Escherichia coli (strain K12) GN=btuE PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.092e-26
Identity = 56/111 (50.45%), Postives = 74/111 (66.67%), Query Frame = 2
Query:  278 EKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLL 610
            + S+    VKDIDG+   L KF G VLLIVNVAS+CGLTP  Y +L ++ + +  +GF +L FPCNQF  QEPGS+ EIK +  T +   FP+F K++VNG    P+YQ L
Sbjct:    2 QDSILTTVVKDIDGEVTTLEKFAGNVLLIVNVASKCGLTPQ-YEQLENIQKAWVDRGFMVLGFPCNQFLEQEPGSDEEIKTYCTTTWGVTFPMFSKIEVNGEGRHPLYQKL 111          

HSP 2 Score: 23.8682 bits (50), Expect = 4.092e-26
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 3
Query:  639 DLVKWNFEKFLSG 677
            D + WNFEKFL G
Sbjct:  141 DDILWNFEKFLVG 153          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: BSAA_BACHD (Glutathione peroxidase homolog bsaA OS=Bacillus halodurans GN=bsaA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.933e-25
Identity = 62/131 (47.33%), Postives = 81/131 (61.83%), Query Frame = 2
Query:  284 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLLKSKCWGNFRRPCQVEL*EVLKW 676
            S+++F+ + I+G++  LS +K +VLLIVN AS+CGLTP  Y EL  LYE YK QGF +L FP NQF  QEPG + EI  F    +   FPIF+KV VNG    P++Q L S+  G F         E +KW
Sbjct:    2 SIHEFSARLINGEEKALSDYKDQVLLIVNTASKCGLTPQ-YEELQILYETYKDQGFTVLGFPSNQFMNQEPGDHNEIAAFCERNYGVSFPIFEKVKVNGKEAHPLFQYLTSQQGGLFT--------EKIKW 123          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX1_CHLRE (Glutathione peroxidase 1, mitochondrial OS=Chlamydomonas reinhardtii GN=GPX PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.217e-24
Identity = 59/122 (48.36%), Postives = 76/122 (62.30%), Query Frame = 2
Query:  254 GAHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTR--FKAEFPIFDKVDVNGPNTAPVYQLLK 613
            G+  T++T  + +  +  DID K+V       +V+L+VNVAS+ GLT +NY E + L  KY      I+AFPCNQFGGQEPG+N EIK FA  R    A   + DKVDVNG N +PVY  LK
Sbjct:   33 GSKPTSSTS-NFHQLSALDIDKKNVDFKSLNNRVVLVVNVASKUGLTAANYKEFATLLGKYPATDLTIVAFPCNQFGGQEPGTNAEIKAFASARGFSGAGALLMDKVDVNGANASPVYNFLK 153          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: BSAA_STAAW (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain MW2) GN=bsaA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.385e-23
Identity = 58/132 (43.94%), Postives = 75/132 (56.82%), Query Frame = 2
Query:  281 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLLKSKCWGNFRRPCQVEL*EVLKW 676
            +++YDF V+   G    L  +KG V+LIVN AS CG T S +  L  LYEKYK QGF IL FPCNQFGGQEPGS  E  +     +   FP+  K+DV G +  P+++ L +   G F         E +KW
Sbjct:    2 ETIYDFVVETNKGVTYKLDAYKGDVMLIVNTASECGFT-SQFEGLQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFN--------EKIKW 124          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: BSAA_STAAS (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain MSSA476) GN=bsaA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.385e-23
Identity = 58/132 (43.94%), Postives = 75/132 (56.82%), Query Frame = 2
Query:  281 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLLKSKCWGNFRRPCQVEL*EVLKW 676
            +++YDF V+   G    L  +KG V+LIVN AS CG T S +  L  LYEKYK QGF IL FPCNQFGGQEPGS  E  +     +   FP+  K+DV G +  P+++ L +   G F         E +KW
Sbjct:    2 ETIYDFVVETNKGVTYKLDAYKGDVMLIVNTASECGFT-SQFEGLQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFN--------EKIKW 124          
The following BLAST results are available for this feature:
BLAST of FC872958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
BSAA_BACSU6.488e-2749.57Glutathione peroxidase homolog bsaA OS=Bacillus su... [more]
GPX42_RAT8.346e-2747.75Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX41_RAT8.396e-2747.75Phospholipid hydroperoxide glutathione peroxidase,... [more]
BSAA_STAES2.427e-2647.41Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
GPX4_HYLLA4.085e-2646.36Phospholipid hydroperoxide glutathione peroxidase,... [more]
BTUE_ECOLI4.092e-2650.45Vitamin B12 transport periplasmic protein btuE OS=... [more]
BSAA_BACHD1.933e-2547.33Glutathione peroxidase homolog bsaA OS=Bacillus ha... [more]
GPX1_CHLRE6.217e-2448.36Glutathione peroxidase 1, mitochondrial OS=Chlamyd... [more]
BSAA_STAAW1.385e-2343.94Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
BSAA_STAAS1.385e-2343.94Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DG11FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872958 ID=FC872958; Name=FC872958; organism=Citrus clementina; type=EST; length=678bp
ATTGCAACGCCCTTAAACCCCCGAACTGGTGTCGGACTCTATGTCGTTCG
AAGGATATCTGGCCTCACATAAACCGGATTTCACACCTAACAAAACATGC
CCTGCTGCATGGGCTACATCAATGGCGGCTTCATGGACTCCTACTAATTC
AATCAAAGCATCGATTGGGTCCGCTAAACCAGGCTTGCTTCAACATGGGC
TGTTTTCCCAATCTTCAAATTTGCCTGGGTTTTTCGTGAAACGTCGTTCC
TTTGGTGCTCACGCTACAGCTGCTACTGAGAAGTCTTTATATGACTTCAC
CGTCAAGGATATTGATGGTAAAGATGTTCCTCTTAGCAAGTTTAAGGGCA
AAGTTCTGTTGATTGTGAATGTCGCTTCAAGATGTGGCTTGACACCATCT
AATTACTCGGAGCTCTCTCACTTATATGAGAAGTACAAGACTCAAGGATT
TGAGATTCTAGCTTTCCCTTGCAATCAATTTGGTGGGCAAGAGCCTGGAT
CAAACCCTGAGATCAAGGAATTCGCTTGTACTAGGTTTAAGGCAGAATTT
CCCATATTTGACAAGGTTGATGTAAATGGACCAAACACAGCTCCAGTTTA
CCAGTTATTGAAGTCCAAGTGCTGGGGGAATTTTAGGCGACCTTGTCAAG
TGGAACTTTGAGAAGTTCTTAAGTGGAC
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