FC872958
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: BSAA_BACSU (Glutathione peroxidase homolog bsaA OS=Bacillus subtilis GN=bsaA PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 6.488e-27 Identity = 57/115 (49.57%), Postives = 72/115 (62.61%), Query Frame = 2 Query: 284 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLLKSKCWG 628 S+Y V+ I GKD+ L F GKVL+IVN AS+CG T S +L LY+ Y+ +G EIL FPCNQF QEPG +I+EF T + FP+F KVDVNG N P++ L G Sbjct: 2 SIYHMKVRTITGKDMTLQPFAGKVLMIVNTASKCGFT-SQLKQLQELYDTYQQEGLEILGFPCNQFMNQEPGEEADIQEFCETNYGVTFPMFSKVDVNGKNAHPLFVYLTEHAKG 115 HSP 2 Score: 23.8682 bits (50), Expect = 6.488e-27 Identity = 11/23 (47.83%), Postives = 15/23 (65.22%), Query Frame = 3 Query: 606 Y*SPSAGGILGD-LVKWNFEKFL 671 Y + A G+LG +KWNF KF+ Sbjct: 108 YLTEHAKGMLGTKAIKWNFTKFI 130
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX42_RAT (Phospholipid hydroperoxide glutathione peroxidase, nuclear OS=Rattus norvegicus GN=Gpx4 PE=2 SV=3) HSP 1 Score: 109.383 bits (272), Expect = 8.346e-27 Identity = 53/111 (47.75%), Postives = 75/111 (67.57%), Query Frame = 2 Query: 281 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLLK 613 +S+++F KDIDG V L K++G V ++ NVAS+ G T NY++L L+ +Y G ILAFPCNQFG QEPGSN EIKEFA + F ++ K+ VNG + P+++ +K Sbjct: 95 RSMHEFAAKDIDGHMVCLDKYRGCVCIVTNVASQUGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSNQEIKEFA-AGYNVRFDMYSKICVNGDDAHPLWKWMK 204 HSP 2 Score: 30.4166 bits (67), Expect = 8.346e-27 Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = 3 Query: 615 PSAGGILGDLVKWNFEKFL 671 P G+LG+ +KWNF KFL Sbjct: 207 PKGRGMLGNAIKWNFTKFL 225
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX41_RAT (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Rattus norvegicus GN=Gpx4 PE=1 SV=3) HSP 1 Score: 109.383 bits (272), Expect = 8.396e-27 Identity = 53/111 (47.75%), Postives = 75/111 (67.57%), Query Frame = 2 Query: 281 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLLK 613 +S+++F KDIDG V L K++G V ++ NVAS+ G T NY++L L+ +Y G ILAFPCNQFG QEPGSN EIKEFA + F ++ K+ VNG + P+++ +K Sbjct: 39 RSMHEFAAKDIDGHMVCLDKYRGCVCIVTNVASQUGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQEPGSNQEIKEFA-AGYNVRFDMYSKICVNGDDAHPLWKWMK 148 HSP 2 Score: 30.4166 bits (67), Expect = 8.396e-27 Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = 3 Query: 615 PSAGGILGDLVKWNFEKFL 671 P G+LG+ +KWNF KFL Sbjct: 151 PKGRGMLGNAIKWNFTKFL 169
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: BSAA_STAES (Glutathione peroxidase homolog bsaA OS=Staphylococcus epidermidis (strain ATCC 12228) GN=bsaA PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 2.427e-26 Identity = 55/116 (47.41%), Postives = 72/116 (62.07%), Query Frame = 2 Query: 281 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLLKSKCWG 628 +S+YDF V+ +G+ L ++KG V+LIVN AS CG TP + L LY++YK Q F IL FPCNQFGGQEPGS E + + FPI +KVDV G N P++ L + G Sbjct: 2 ESIYDFVVQKNNGESYKLEQYKGDVMLIVNTASECGFTPQ-FEGLQKLYDEYKDQRFIILGFPCNQFGGQEPGSGEEAAQNCKINYGVTFPIHEKVDVKGDNQHPLFHFLTNAAKG 116 HSP 2 Score: 26.5646 bits (57), Expect = 2.427e-26 Identity = 9/18 (50.00%), Postives = 14/18 (77.78%), Query Frame = 3 Query: 618 SAGGILGDLVKWNFEKFL 671 +A G++ + +KWNF KFL Sbjct: 113 AAKGMINEKIKWNFTKFL 130
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX4_HYLLA (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Hylobates lar GN=GPX4 PE=2 SV=2) HSP 1 Score: 105.916 bits (263), Expect = 4.085e-26 Identity = 51/110 (46.36%), Postives = 74/110 (67.27%), Query Frame = 2 Query: 284 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLLK 613 S+++F+ K +DG V L K++G V ++ NVAS+ G T NY++L L+ +Y G LAFPCNQFG QEPGSN EIKEFA + +F +F K+ VNG + P+++ +K Sbjct: 40 SMHEFSAKVLDGHTVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRFLAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMK 148 HSP 2 Score: 31.5722 bits (70), Expect = 4.085e-26 Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 3 Query: 615 PSAGGILGDLVKWNFEKFL 671 P GILG+ +KWNF KFL Sbjct: 151 PKGKGILGNAIKWNFTKFL 169
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: BTUE_ECOLI (Vitamin B12 transport periplasmic protein btuE OS=Escherichia coli (strain K12) GN=btuE PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 4.092e-26 Identity = 56/111 (50.45%), Postives = 74/111 (66.67%), Query Frame = 2 Query: 278 EKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLL 610 + S+ VKDIDG+ L KF G VLLIVNVAS+CGLTP Y +L ++ + + +GF +L FPCNQF QEPGS+ EIK + T + FP+F K++VNG P+YQ L Sbjct: 2 QDSILTTVVKDIDGEVTTLEKFAGNVLLIVNVASKCGLTPQ-YEQLENIQKAWVDRGFMVLGFPCNQFLEQEPGSDEEIKTYCTTTWGVTFPMFSKIEVNGEGRHPLYQKL 111 HSP 2 Score: 23.8682 bits (50), Expect = 4.092e-26 Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 3 Query: 639 DLVKWNFEKFLSG 677 D + WNFEKFL G Sbjct: 141 DDILWNFEKFLVG 153
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: BSAA_BACHD (Glutathione peroxidase homolog bsaA OS=Bacillus halodurans GN=bsaA PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.933e-25 Identity = 62/131 (47.33%), Postives = 81/131 (61.83%), Query Frame = 2 Query: 284 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLLKSKCWGNFRRPCQVEL*EVLKW 676 S+++F+ + I+G++ LS +K +VLLIVN AS+CGLTP Y EL LYE YK QGF +L FP NQF QEPG + EI F + FPIF+KV VNG P++Q L S+ G F E +KW Sbjct: 2 SIHEFSARLINGEEKALSDYKDQVLLIVNTASKCGLTPQ-YEELQILYETYKDQGFTVLGFPSNQFMNQEPGDHNEIAAFCERNYGVSFPIFEKVKVNGKEAHPLFQYLTSQQGGLFT--------EKIKW 123
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX1_CHLRE (Glutathione peroxidase 1, mitochondrial OS=Chlamydomonas reinhardtii GN=GPX PE=1 SV=2) HSP 1 Score: 110.923 bits (276), Expect = 6.217e-24 Identity = 59/122 (48.36%), Postives = 76/122 (62.30%), Query Frame = 2 Query: 254 GAHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTR--FKAEFPIFDKVDVNGPNTAPVYQLLK 613 G+ T++T + + + DID K+V +V+L+VNVAS+ GLT +NY E + L KY I+AFPCNQFGGQEPG+N EIK FA R A + DKVDVNG N +PVY LK Sbjct: 33 GSKPTSSTS-NFHQLSALDIDKKNVDFKSLNNRVVLVVNVASKUGLTAANYKEFATLLGKYPATDLTIVAFPCNQFGGQEPGTNAEIKAFASARGFSGAGALLMDKVDVNGANASPVYNFLK 153
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: BSAA_STAAW (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain MW2) GN=bsaA PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.385e-23 Identity = 58/132 (43.94%), Postives = 75/132 (56.82%), Query Frame = 2 Query: 281 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLLKSKCWGNFRRPCQVEL*EVLKW 676 +++YDF V+ G L +KG V+LIVN AS CG T S + L LYEKYK QGF IL FPCNQFGGQEPGS E + + FP+ K+DV G + P+++ L + G F E +KW Sbjct: 2 ETIYDFVVETNKGVTYKLDAYKGDVMLIVNTASECGFT-SQFEGLQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFN--------EKIKW 124
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: BSAA_STAAS (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain MSSA476) GN=bsaA PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.385e-23 Identity = 58/132 (43.94%), Postives = 75/132 (56.82%), Query Frame = 2 Query: 281 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLLKSKCWGNFRRPCQVEL*EVLKW 676 +++YDF V+ G L +KG V+LIVN AS CG T S + L LYEKYK QGF IL FPCNQFGGQEPGS E + + FP+ K+DV G + P+++ L + G F E +KW Sbjct: 2 ETIYDFVVETNKGVTYKLDAYKGDVMLIVNTASECGFT-SQFEGLQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFN--------EKIKW 124 The following BLAST results are available for this feature:
BLAST of FC872958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 110
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Sequences
The
following sequences are available for this feature:
EST sequence >FC872958 ID=FC872958; Name=FC872958; organism=Citrus clementina; type=EST; length=678bpback to top |